Wall clock time and date at job start Mon Mar 30 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.91652 * 2 1 4 4 C 1.54913 * 111.00119 * 236.10185 * 2 1 3 5 5 N 1.47431 * 104.83095 * 204.91468 * 4 2 1 6 6 C 1.36934 * 125.64769 * 204.09544 * 5 4 2 7 7 H 1.07999 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99833 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99909 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47188 * 89.99873 * 10 8 6 12 12 H 1.48502 * 109.46758 * 209.99823 * 10 8 6 13 13 H 1.48500 * 109.47043 * 329.99817 * 10 8 6 14 14 C 1.47025 * 108.69996 * 24.12839 * 5 4 2 15 15 C 1.54317 * 107.27583 * 358.93931 * 14 5 4 16 16 H 1.09001 * 110.72006 * 96.34603 * 15 14 5 17 17 N 1.46492 * 110.72399 * 219.44283 * 15 14 5 18 18 C 1.34777 * 120.00328 * 273.54936 * 17 15 14 19 19 O 1.21610 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47422 * 120.00406 * 180.02562 * 18 17 15 21 21 C 1.36084 * 126.45255 * 179.97438 * 20 18 17 22 22 O 1.34252 * 106.95334 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22471 * 359.97438 * 22 21 20 24 24 N 1.29936 * 109.24429 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47201 * 296.09522 * 1 2 3 26 26 H 1.09002 * 109.47646 * 56.09379 * 1 2 3 27 27 H 1.09000 * 109.47454 * 176.09947 * 1 2 3 28 28 H 1.08998 * 110.36662 * 86.07916 * 4 2 1 29 29 H 1.08994 * 110.46090 * 323.79908 * 4 2 1 30 30 H 0.96994 * 119.99677 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.88251 * 239.52065 * 14 5 4 32 32 H 1.08997 * 110.01057 * 118.43278 * 14 5 4 33 33 H 0.97010 * 120.00181 * 93.54741 * 17 15 14 34 34 H 1.08000 * 126.52429 * 359.97438 * 21 20 18 35 35 H 1.08001 * 125.37615 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7735 6 6 4.4639 -1.5666 -1.6074 7 1 4.3333 -1.5115 -2.6780 8 6 5.6830 -1.9653 -1.0766 9 7 5.8424 -2.0320 0.2282 10 14 7.0972 -2.4074 -2.2142 11 1 7.9010 -1.1920 -2.5000 12 1 7.9570 -3.4273 -1.5617 13 1 6.5578 -2.9543 -3.4851 14 6 3.4674 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4479 -1.6633 1.4238 17 7 2.2287 0.0494 2.3814 18 6 2.3023 -0.5007 3.6097 19 8 2.2500 -1.7087 3.7389 20 6 2.4451 0.3621 4.7965 21 6 2.5308 -0.0504 6.0904 22 8 2.6509 1.0529 6.8459 23 6 2.6400 2.1199 6.0345 24 7 2.5171 1.7209 4.8040 25 1 -0.3634 0.4521 0.9230 26 1 -0.3634 0.5733 -0.8529 27 1 -0.3634 -1.0253 -0.0699 28 1 2.1559 -0.1719 -2.0837 29 1 1.4524 -1.6703 -1.4044 30 1 6.6944 -2.3103 0.5991 31 1 4.2426 -0.5998 1.0598 32 1 3.6662 -2.2884 1.0422 33 1 2.2701 1.0131 2.2784 34 1 2.5067 -1.0711 6.4426 35 1 2.7207 3.1486 6.3532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079487719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:34 Heat of formation + Delta-G solvation = -13.330573 kcal Electronic energy + Delta-G solvation = -20045.200233 eV Core-core repulsion = 16851.689631 eV Total energy + Delta-G solvation = -3193.510602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.36519 -40.91059 -39.12094 -35.92562 -35.58141 -34.22662 -32.18983 -31.43286 -29.60567 -27.42467 -25.94021 -24.61581 -23.59784 -22.32246 -21.55997 -21.18799 -19.35980 -18.90219 -17.70536 -17.56919 -17.34863 -16.91060 -16.08570 -15.83327 -15.51053 -15.35264 -14.84483 -14.69130 -14.29558 -14.09473 -13.76745 -13.35119 -13.05856 -12.89308 -12.60282 -12.41872 -12.21673 -12.08979 -11.88140 -11.85255 -11.68041 -11.49118 -11.27447 -10.76200 -10.28289 -9.98975 -8.94525 -7.85710 -5.24153 0.11828 1.10282 1.43598 1.46809 1.55624 1.72867 2.10861 2.28084 2.48770 3.11144 3.32621 3.55584 3.71928 3.87497 3.91720 4.02689 4.08133 4.44501 4.53654 4.58648 4.66976 4.70049 4.87068 5.04252 5.06481 5.15462 5.21525 5.26887 5.43192 5.47729 5.57874 5.74484 6.14894 6.32906 6.62717 7.03815 7.12652 7.73962 8.38180 9.23792 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.005369 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.885321 B = 5213.732384 C = 6098.595524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.087 0.913 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.091 0.909 8 C -0.072 4.072 9 N -0.955 5.955 10 Si 0.983 3.017 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.264 1.264 14 C 0.190 3.810 15 C 0.134 3.866 16 H 0.080 0.920 17 N -0.687 5.687 18 C 0.592 3.408 19 O -0.576 6.576 20 C -0.102 4.102 21 C 0.029 3.971 22 O -0.195 6.195 23 C 0.201 3.799 24 N -0.500 5.500 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.244 0.756 31 H 0.012 0.988 32 H -0.006 1.006 33 H 0.414 0.586 34 H 0.249 0.751 35 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 10.769 10.842 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.106 0.894 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.604 5.604 10 Si 0.811 3.189 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.189 1.189 14 C 0.063 3.937 15 C 0.029 3.971 16 H 0.098 0.902 17 N -0.336 5.336 18 C 0.379 3.621 19 O -0.456 6.456 20 C -0.221 4.221 21 C -0.045 4.045 22 O -0.080 6.080 23 C -0.028 4.028 24 N -0.229 5.229 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.012 0.988 33 H 0.251 0.749 34 H 0.265 0.735 35 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges -10.692 10.248 10.372 18.081 hybrid contribution 1.343 -0.631 0.029 1.484 sum -9.349 9.617 10.401 16.973 Atomic orbital electron populations 1.21650 0.91448 1.02506 1.02961 1.22544 0.97515 0.98751 0.92597 0.89435 1.21865 0.85211 0.95865 0.96229 1.44736 1.09615 1.79255 1.01874 1.19549 0.90143 1.37569 0.89886 0.89170 1.25774 1.00805 1.02363 0.97469 1.70255 1.24145 1.54711 1.11265 0.85009 0.78710 0.77262 0.77940 1.21005 1.22463 1.18871 1.21080 0.92385 0.96584 0.83641 1.22172 0.96803 0.93573 0.84592 0.90234 1.45600 1.72221 1.10979 1.04823 1.17236 0.75726 0.86297 0.82811 1.90800 1.52855 1.15231 1.86698 1.21567 1.14709 0.91003 0.94777 1.25628 0.97746 0.92655 0.88497 1.84486 1.68482 1.15332 1.39747 1.29285 0.96643 0.95049 0.81790 1.70711 1.18696 1.09128 1.24400 0.91697 0.90137 0.92595 0.92515 0.95218 0.94681 0.96938 0.98793 0.74932 0.73549 0.67857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.31 71.98 0.67 -2.48 16 2 C -0.09 -3.15 3.25 -9.40 -0.03 -3.19 16 3 H 0.09 2.80 8.00 -2.39 -0.02 2.78 16 4 C 0.13 5.43 6.70 86.86 0.58 6.01 16 5 N -0.63 -33.79 3.39 -691.98 -2.35 -36.14 16 6 C -0.24 -14.08 10.28 84.03 0.86 -13.21 16 7 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 8 C -0.07 -4.27 5.49 84.86 0.47 -3.80 16 9 N -0.95 -61.32 10.31 21.65 0.22 -61.10 16 10 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.19 10.27 5.12 86.73 0.44 10.72 16 15 C 0.13 5.50 2.70 46.18 0.12 5.62 16 16 H 0.08 3.41 7.59 -2.39 -0.02 3.39 16 17 N -0.69 -25.04 5.13 -440.19 -2.26 -27.30 16 18 C 0.59 22.39 7.81 86.66 0.68 23.07 16 19 O -0.58 -25.73 16.61 -4.06 -0.07 -25.80 16 20 C -0.10 -3.02 6.99 40.41 0.28 -2.73 16 21 C 0.03 0.66 11.94 67.32 0.80 1.46 16 22 O -0.20 -3.38 10.73 0.39 0.00 -3.38 16 23 C 0.20 3.00 13.19 130.52 1.72 4.73 16 24 N -0.50 -12.36 11.06 -305.14 -3.37 -15.73 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16 30 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.01 0.76 7.27 -2.38 -0.02 0.74 16 32 H -0.01 -0.40 7.50 -2.39 -0.02 -0.41 16 33 H 0.41 13.31 8.25 -92.70 -0.76 12.55 16 34 H 0.25 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.31 0.61 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -81.53 302.26 1.16 -80.37 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.35 Total: 13.40 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.61 Total: 26.19 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -7.76 Total: -140.27 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.06 Total: -29.18 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -81.53 1.16 -80.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079487719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.044 kcal (2) G-P(sol) polarization free energy of solvation -81.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds