Wall clock time and date at job start Mon Mar 30 2020 00:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 O 1.42907 * 109.46865 * 120.00330 * 2 1 3 5 5 C 1.35427 * 117.00043 * 90.00255 * 4 2 1 6 6 N 1.32606 * 120.15019 * 359.97438 * 5 4 2 7 7 C 1.32097 * 120.01194 * 179.97438 * 6 5 4 8 8 C 1.38752 * 120.31763 * 0.02871 * 7 6 5 9 9 N 1.31751 * 120.30117 * 359.97438 * 8 7 6 10 10 C 1.33093 * 119.97708 * 359.97438 * 9 8 7 11 11 C 1.47668 * 120.15760 * 180.02562 * 10 9 8 12 12 O 1.21600 * 120.00452 * 175.22913 * 11 10 9 13 13 N 1.34780 * 119.99780 * 355.22224 * 11 10 9 14 14 C 1.46501 * 120.00035 * 185.85417 * 13 11 10 15 15 C 1.36797 * 120.00367 * 5.85606 * 13 11 10 16 16 H 1.08004 * 119.99674 * 35.37582 * 15 13 11 17 17 C 1.39091 * 120.00349 * 215.38229 * 15 13 11 18 18 N 1.31335 * 119.99792 * 5.15478 * 17 15 13 19 19 Si 1.86801 * 120.00155 * 185.15029 * 17 15 13 20 20 H 1.48500 * 109.46679 * 90.00075 * 19 17 15 21 21 H 1.48498 * 109.47110 * 209.99667 * 19 17 15 22 22 H 1.48501 * 109.47141 * 330.00021 * 19 17 15 23 23 H 1.08999 * 109.47332 * 60.00002 * 1 2 3 24 24 H 1.09001 * 109.47639 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47250 * 300.00086 * 1 2 3 26 26 H 1.08999 * 109.47250 * 239.99914 * 2 1 3 27 27 H 1.09005 * 109.47136 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47190 * 299.99770 * 3 2 1 29 29 H 1.09002 * 109.46772 * 60.00234 * 3 2 1 30 30 H 1.08004 * 119.84095 * 180.02562 * 7 6 5 31 31 H 1.08004 * 119.85229 * 179.69484 * 8 7 6 32 32 H 1.09001 * 109.47193 * 84.99921 * 14 13 11 33 33 H 1.08993 * 109.47321 * 204.99895 * 14 13 11 34 34 H 1.09005 * 109.47100 * 325.00796 * 14 13 11 35 35 H 0.97002 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2112 -2.0086 1.0654 6 7 1.9710 -2.6343 -0.0788 7 6 2.1724 -3.9363 -0.1748 8 6 2.6346 -4.6560 0.9177 9 7 2.8772 -4.0469 2.0605 10 6 2.6794 -2.7353 2.1702 11 6 2.9506 -2.0485 3.4490 12 8 2.8525 -0.8387 3.5222 13 7 3.3067 -2.7627 4.5351 14 6 3.4508 -2.0991 5.8332 15 6 3.5337 -4.1073 4.4255 16 1 3.9855 -4.5073 3.5298 17 6 3.1825 -4.9592 5.4674 18 7 2.5419 -4.4885 6.5128 19 14 3.6220 -6.7726 5.3797 20 1 4.9606 -6.9873 5.9857 21 1 2.6092 -7.5639 6.1236 22 1 3.6455 -7.2082 3.9602 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.9763 -4.4430 -1.1082 31 1 2.7919 -5.7211 0.8323 32 1 2.4777 -2.0393 6.3207 33 1 4.1363 -2.6702 6.4592 34 1 3.8454 -1.0937 5.6855 35 1 2.2973 -5.0826 7.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198055278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:17 Heat of formation + Delta-G solvation = -1.875081 kcal Electronic energy + Delta-G solvation = -20620.979203 eV Core-core repulsion = 17427.965349 eV Total energy + Delta-G solvation = -3193.013854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75283 -38.33861 -37.92428 -34.73450 -33.53095 -32.91922 -31.43981 -30.02609 -27.11990 -26.55594 -25.25033 -24.16583 -23.18508 -21.06769 -19.55546 -18.21708 -17.73906 -17.29270 -15.65245 -15.46344 -14.91943 -14.62728 -14.32841 -14.22008 -13.94295 -13.66440 -13.30609 -12.91383 -12.41249 -12.20522 -12.11915 -11.81822 -11.63438 -11.53319 -11.27005 -11.14909 -10.88185 -10.84026 -10.62227 -10.36027 -10.23473 -10.05704 -9.09707 -8.81860 -8.19841 -8.10874 -7.48105 -6.38258 -3.91171 1.12098 1.70708 3.14143 3.21701 3.26125 3.34321 3.76197 4.10040 4.39828 4.61276 4.62535 4.90726 5.05540 5.15421 5.17695 5.25014 5.39116 5.53540 5.66002 5.73826 5.89218 5.94823 5.98063 6.19371 6.28780 6.33416 6.59370 6.82791 6.95670 7.29402 7.55388 7.63398 7.75774 7.90004 8.34214 8.54302 9.08830 9.49765 9.93346 10.64563 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.006851 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.998964 B = 4086.172179 C = 4931.872481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.253 6.253 5 C 0.306 3.694 6 N -0.513 5.513 7 C 0.074 3.926 8 C -0.011 4.011 9 N -0.349 5.349 10 C 0.054 3.946 11 C 0.492 3.508 12 O -0.589 6.589 13 N -0.412 5.412 14 C 0.118 3.882 15 C -0.295 4.295 16 H 0.128 0.872 17 C 0.032 3.968 18 N -0.865 5.865 19 Si 0.926 3.074 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 1.420 -11.136 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.156 6.156 5 C 0.122 3.878 6 N -0.243 5.243 7 C -0.085 4.085 8 C -0.171 4.171 9 N -0.067 5.067 10 C -0.090 4.090 11 C 0.281 3.719 12 O -0.475 6.475 13 N -0.128 5.128 14 C -0.025 4.025 15 C -0.426 4.426 16 H 0.145 0.855 17 C -0.174 4.174 18 N -0.502 5.502 19 Si 0.753 3.247 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.188 1.188 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.268 2.203 -10.633 10.932 hybrid contribution -0.137 -1.331 -0.184 1.350 sum -1.405 0.872 -10.817 10.943 Atomic orbital electron populations 1.22196 0.95267 1.02599 1.02298 1.22359 0.94286 0.93240 0.88602 1.21843 1.02000 0.93989 1.02542 1.86697 1.78314 1.14384 1.36238 1.20803 0.91350 0.85815 0.89846 1.68010 1.20467 1.11491 1.24332 1.23446 0.95749 0.89191 1.00102 1.23839 1.00997 1.02035 0.90213 1.69626 1.08929 1.06760 1.21393 1.21733 1.02854 0.89723 0.94674 1.17452 0.84406 0.86494 0.83538 1.90680 1.59230 1.12922 1.84713 1.43569 1.53962 1.08514 1.06748 1.21368 1.01588 0.94661 0.84924 1.20597 1.36464 0.80884 1.04652 0.85473 1.25659 0.95343 1.00662 0.95708 1.69942 1.35821 1.36596 1.07860 0.85918 0.78043 0.81842 0.78915 1.20337 1.21014 1.18808 0.91535 0.92306 0.91822 0.89907 0.91891 0.91083 0.91387 0.82074 0.81866 0.92718 0.91606 0.94303 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.53 37.15 0.35 -1.95 16 2 C 0.07 1.13 3.12 -26.74 -0.08 1.05 16 3 C -0.15 -1.93 9.56 37.16 0.36 -1.57 16 4 O -0.25 -5.30 7.86 -39.78 -0.31 -5.61 16 5 C 0.31 6.49 7.46 -16.45 -0.12 6.37 16 6 N -0.51 -9.17 8.82 -12.76 -0.11 -9.28 16 7 C 0.07 1.12 11.22 -17.25 -0.19 0.93 16 8 C -0.01 -0.19 11.21 -17.40 -0.20 -0.39 16 9 N -0.35 -7.61 6.40 -9.54 -0.06 -7.67 16 10 C 0.05 1.27 6.67 -82.70 -0.55 0.72 16 11 C 0.49 13.13 7.60 -12.41 -0.09 13.03 16 12 O -0.59 -16.54 14.81 -16.53 -0.24 -16.79 16 13 N -0.41 -11.02 2.96 -123.34 -0.37 -11.39 16 14 C 0.12 2.94 8.71 59.85 0.52 3.47 16 15 C -0.30 -7.70 7.88 -15.02 -0.12 -7.82 16 16 H 0.13 3.23 5.50 -52.48 -0.29 2.94 16 17 C 0.03 0.83 5.18 -17.45 -0.09 0.74 16 18 N -0.86 -22.95 11.18 55.50 0.62 -22.33 16 19 Si 0.93 19.66 29.56 -169.99 -5.02 14.64 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.26 7.00 -51.93 -0.36 0.90 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.16 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.05 1.42 7.73 -51.93 -0.40 1.02 16 33 H 0.07 1.62 7.32 -51.93 -0.38 1.24 16 34 H 0.04 0.92 7.50 -51.93 -0.39 0.53 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -31.36 299.38 -5.55 -36.91 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.34 Total: 2.43 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -0.22 Total: 14.57 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.08 Total: -50.67 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.56 Total: -22.40 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.36 -5.55 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198055278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.037 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds