Wall clock time and date at job start Mon Mar 30 2020 00:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 O 1.42907 * 109.46865 * 120.00330 * 2 1 3 5 5 C 1.35427 * 117.00043 * 90.00255 * 4 2 1 6 6 N 1.32606 * 120.15019 * 359.97438 * 5 4 2 7 7 C 1.32097 * 120.01194 * 179.97438 * 6 5 4 8 8 C 1.38752 * 120.31763 * 0.02871 * 7 6 5 9 9 N 1.31751 * 120.30117 * 359.97438 * 8 7 6 10 10 C 1.33093 * 119.97708 * 359.97438 * 9 8 7 11 11 C 1.47668 * 120.15760 * 180.02562 * 10 9 8 12 12 O 1.21600 * 120.00452 * 175.22913 * 11 10 9 13 13 N 1.34780 * 119.99780 * 355.22224 * 11 10 9 14 14 C 1.46501 * 120.00035 * 185.85417 * 13 11 10 15 15 C 1.36797 * 120.00367 * 5.85606 * 13 11 10 16 16 H 1.08004 * 119.99674 * 35.37582 * 15 13 11 17 17 C 1.39091 * 120.00349 * 215.38229 * 15 13 11 18 18 N 1.31335 * 119.99792 * 5.15478 * 17 15 13 19 19 Si 1.86801 * 120.00155 * 185.15029 * 17 15 13 20 20 H 1.48500 * 109.46679 * 90.00075 * 19 17 15 21 21 H 1.48498 * 109.47110 * 209.99667 * 19 17 15 22 22 H 1.48501 * 109.47141 * 330.00021 * 19 17 15 23 23 H 1.08999 * 109.47332 * 60.00002 * 1 2 3 24 24 H 1.09001 * 109.47639 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47250 * 300.00086 * 1 2 3 26 26 H 1.08999 * 109.47250 * 239.99914 * 2 1 3 27 27 H 1.09005 * 109.47136 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47190 * 299.99770 * 3 2 1 29 29 H 1.09002 * 109.46772 * 60.00234 * 3 2 1 30 30 H 1.08004 * 119.84095 * 180.02562 * 7 6 5 31 31 H 1.08004 * 119.85229 * 179.69484 * 8 7 6 32 32 H 1.09001 * 109.47193 * 84.99921 * 14 13 11 33 33 H 1.08993 * 109.47321 * 204.99895 * 14 13 11 34 34 H 1.09005 * 109.47100 * 325.00796 * 14 13 11 35 35 H 0.97002 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2112 -2.0086 1.0654 6 7 1.9710 -2.6343 -0.0788 7 6 2.1724 -3.9363 -0.1748 8 6 2.6346 -4.6560 0.9177 9 7 2.8772 -4.0469 2.0605 10 6 2.6794 -2.7353 2.1702 11 6 2.9506 -2.0485 3.4490 12 8 2.8525 -0.8387 3.5222 13 7 3.3067 -2.7627 4.5351 14 6 3.4508 -2.0991 5.8332 15 6 3.5337 -4.1073 4.4255 16 1 3.9855 -4.5073 3.5298 17 6 3.1825 -4.9592 5.4674 18 7 2.5419 -4.4885 6.5128 19 14 3.6220 -6.7726 5.3797 20 1 4.9606 -6.9873 5.9857 21 1 2.6092 -7.5639 6.1236 22 1 3.6455 -7.2082 3.9602 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.9763 -4.4430 -1.1082 31 1 2.7919 -5.7211 0.8323 32 1 2.4777 -2.0393 6.3207 33 1 4.1363 -2.6702 6.4592 34 1 3.8454 -1.0937 5.6855 35 1 2.2973 -5.0826 7.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198055278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:17 Heat of formation + Delta-G solvation = -23.471555 kcal Electronic energy + Delta-G solvation = -20621.915696 eV Core-core repulsion = 17427.965349 eV Total energy + Delta-G solvation = -3193.950348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27500 -40.03786 -39.59007 -36.69881 -35.03509 -34.20618 -33.37422 -31.52437 -28.49376 -28.18324 -27.02712 -25.76910 -24.76534 -22.36129 -21.41889 -19.85202 -19.32749 -18.83260 -17.45423 -16.98174 -16.47511 -16.28925 -15.91050 -15.79492 -15.58314 -15.19980 -14.83035 -14.40958 -13.93098 -13.60346 -13.42618 -13.24726 -13.20427 -13.11446 -12.97938 -12.89256 -12.64724 -12.22086 -12.05993 -12.00365 -11.67400 -11.58223 -10.93708 -10.76238 -9.90804 -9.64613 -9.37245 -8.25814 -5.90768 -0.37169 0.24389 1.48785 1.50094 1.63982 1.94886 2.04135 2.35875 2.78462 2.93829 3.13856 3.23867 3.54565 3.67718 3.91579 4.01950 4.23382 4.32368 4.35298 4.51129 4.67196 4.78872 4.80734 4.81236 4.84677 4.90295 5.16440 5.21082 5.24004 5.31607 5.66768 5.93566 6.22582 6.32248 6.59120 6.85634 7.17739 7.54813 7.96536 8.79102 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.006851 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.998964 B = 4086.172179 C = 4931.872481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.061 3.939 3 C -0.142 4.142 4 O -0.285 6.285 5 C 0.300 3.700 6 N -0.507 5.507 7 C 0.115 3.885 8 C -0.011 4.011 9 N -0.372 5.372 10 C 0.004 3.996 11 C 0.483 3.517 12 O -0.618 6.618 13 N -0.433 5.433 14 C 0.131 3.869 15 C -0.317 4.317 16 H 0.133 0.867 17 C -0.013 4.013 18 N -0.907 5.907 19 Si 0.993 3.007 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.247 1.247 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.226 0.774 31 H 0.209 0.791 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 -0.394 -14.858 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.005 3.995 3 C -0.199 4.199 4 O -0.190 6.190 5 C 0.118 3.882 6 N -0.237 5.237 7 C -0.047 4.047 8 C -0.173 4.173 9 N -0.089 5.089 10 C -0.136 4.136 11 C 0.273 3.727 12 O -0.507 6.507 13 N -0.149 5.149 14 C -0.012 4.012 15 C -0.446 4.446 16 H 0.150 0.850 17 C -0.214 4.214 18 N -0.545 5.545 19 Si 0.816 3.184 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.170 1.170 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.243 0.757 31 H 0.225 0.775 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.610 0.446 -14.328 14.425 hybrid contribution -0.095 -0.745 0.614 0.970 sum -1.705 -0.299 -13.714 13.823 Atomic orbital electron populations 1.22165 0.93905 1.02082 1.03517 1.22785 0.95460 0.93995 0.87239 1.21883 1.01510 0.92722 1.03828 1.86658 1.78510 1.14695 1.39097 1.20724 0.91232 0.86126 0.90091 1.68223 1.20197 1.12798 1.22454 1.24550 0.90530 0.87963 1.01634 1.24646 0.99733 1.03990 0.88954 1.69367 1.09077 1.06190 1.24295 1.21204 1.07126 0.90980 0.94338 1.18081 0.83297 0.86440 0.84886 1.90615 1.60071 1.14240 1.85733 1.43765 1.55094 1.09173 1.06848 1.21157 1.00365 0.94655 0.85009 1.20807 1.37807 0.80681 1.05322 0.85029 1.26541 0.94939 1.04866 0.95084 1.70071 1.37748 1.37969 1.08756 0.84913 0.77552 0.76289 0.79639 1.19859 1.21312 1.16970 0.87852 0.93618 0.93022 0.89088 0.92714 0.87154 0.92643 0.75725 0.77478 0.94591 0.91835 0.94147 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.53 71.98 0.69 -3.46 16 2 C 0.06 1.84 3.12 30.59 0.10 1.94 16 3 C -0.14 -3.56 9.56 71.98 0.69 -2.87 16 4 O -0.29 -12.07 7.86 -66.37 -0.52 -12.60 16 5 C 0.30 12.53 7.46 85.07 0.63 13.16 16 6 N -0.51 -16.44 8.82 -307.10 -2.71 -19.15 16 7 C 0.11 2.83 11.22 84.78 0.95 3.78 16 8 C -0.01 -0.32 11.21 84.83 0.95 0.64 16 9 N -0.37 -15.73 6.40 -184.08 -1.18 -16.91 16 10 C 0.00 0.19 6.67 41.94 0.28 0.47 16 11 C 0.48 26.96 7.60 86.73 0.66 27.62 16 12 O -0.62 -36.61 14.81 16.82 0.25 -36.36 16 13 N -0.43 -24.25 2.96 -662.40 -1.96 -26.21 16 14 C 0.13 7.01 8.71 127.77 1.11 8.12 16 15 C -0.32 -16.94 7.88 84.12 0.66 -16.28 16 16 H 0.13 6.74 5.50 -2.91 -0.02 6.72 16 17 C -0.01 -0.67 5.18 84.97 0.44 -0.23 16 18 N -0.91 -49.96 11.18 21.69 0.24 -49.72 16 19 Si 0.99 40.18 29.56 68.60 2.03 42.21 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 2.55 7.00 -2.39 -0.02 2.53 16 27 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.04 2.00 7.73 -2.39 -0.02 1.98 16 33 H 0.06 3.32 7.32 -2.39 -0.02 3.30 16 34 H 0.04 2.06 7.50 -2.38 -0.02 2.04 16 35 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -73.64 299.38 4.41 -69.23 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.10 Total: 16.63 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 7.16 Total: 32.88 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -5.61 Total: -111.98 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.27 Total: -48.96 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -73.64 4.41 -69.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198055278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.758 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds