Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40080 * 126.12011 * 2 1 4 4 C 1.30991 * 108.48773 * 180.27012 * 3 2 1 5 5 C 1.50697 * 125.73269 * 179.78132 * 4 3 2 6 6 H 1.09002 * 110.27936 * 184.29899 * 5 4 3 7 7 C 1.54948 * 110.30640 * 306.39369 * 5 4 3 8 8 C 1.55420 * 100.89208 * 155.28818 * 7 5 4 9 9 C 1.54385 * 102.30661 * 325.98414 * 8 7 5 10 10 O 1.43242 * 107.58723 * 21.29257 * 9 8 7 11 11 C 1.39475 * 108.54320 * 359.77884 * 4 3 2 12 12 C 1.36070 * 126.12109 * 179.89329 * 2 1 3 13 13 N 1.38585 * 126.30910 * 359.97438 * 12 2 1 14 14 C 1.34779 * 119.99486 * 179.71594 * 13 12 2 15 15 O 1.21818 * 120.00307 * 359.97438 * 14 13 12 16 16 C 1.41534 * 119.99883 * 179.97438 * 14 13 12 17 17 H 1.07993 * 119.99858 * 344.86864 * 16 14 13 18 18 C 1.40166 * 119.99628 * 164.86341 * 16 14 13 19 19 N 1.30622 * 119.99551 * 155.21446 * 18 16 14 20 20 Si 1.86795 * 120.00095 * 335.20734 * 18 16 14 21 21 H 1.48499 * 109.47300 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47558 * 239.99959 * 20 18 16 23 23 H 1.48508 * 109.46862 * 120.00500 * 20 18 16 24 24 H 1.09000 * 109.46905 * 270.11178 * 1 2 3 25 25 H 1.09001 * 109.47514 * 30.11099 * 1 2 3 26 26 H 1.09003 * 109.47234 * 150.10992 * 1 2 3 27 27 H 1.09006 * 111.12083 * 273.27686 * 7 5 4 28 28 H 1.08994 * 111.13083 * 37.43603 * 7 5 4 29 29 H 1.09001 * 110.87755 * 207.75086 * 8 7 5 30 30 H 1.08994 * 110.93243 * 84.24914 * 8 7 5 31 31 H 1.08990 * 109.83227 * 261.77254 * 9 8 7 32 32 H 1.08996 * 109.89819 * 140.84540 * 9 8 7 33 33 H 1.07996 * 126.08210 * 179.97438 * 11 4 3 34 34 H 0.97000 * 120.00713 * 359.71663 * 13 12 2 35 35 H 0.96992 * 120.00048 * 1.85487 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2907 1.1315 0.0000 4 6 3.5390 0.7348 -0.0059 5 6 4.7483 1.6340 -0.0126 6 1 5.6595 1.0412 -0.0933 7 6 4.6595 2.6458 -1.1828 8 6 5.5537 3.7971 -0.6441 9 6 5.2792 3.7441 0.8742 10 8 4.7794 2.4366 1.1783 11 6 3.5612 -0.6598 -0.0047 12 6 2.2670 -1.0991 0.0020 13 7 1.8487 -2.4203 0.0050 14 6 2.7581 -3.4151 0.0010 15 8 3.9477 -3.1528 -0.0057 16 6 2.3310 -4.7644 0.0046 17 1 1.3086 -5.0065 0.2545 18 6 3.2349 -5.7864 -0.3164 19 7 3.0363 -6.9978 0.1301 20 14 4.7233 -5.4161 -1.3825 21 1 4.7196 -3.9788 -1.7558 22 1 4.6709 -6.2475 -2.6120 23 1 5.9633 -5.7277 -0.6269 24 1 -0.3633 0.0020 1.0277 25 1 -0.3634 0.8890 -0.5155 26 1 -0.3634 -0.8910 -0.5121 27 1 5.0706 2.2230 -2.0996 28 1 3.6341 2.9832 -1.3335 29 1 5.2453 4.7560 -1.0608 30 1 6.6055 3.6046 -0.8552 31 1 4.5365 4.4954 1.1422 32 1 6.2025 3.9243 1.4247 33 1 4.4440 -1.2819 -0.0089 34 1 0.9015 -2.6292 0.0099 35 1 2.2493 -7.1960 0.6611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321143760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -11.425575 kcal Electronic energy + Delta-G solvation = -19959.782204 eV Core-core repulsion = 16766.354209 eV Total energy + Delta-G solvation = -3193.427995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78183 -39.09878 -37.93006 -33.98050 -33.21275 -32.60718 -31.99063 -29.55106 -28.57924 -26.35378 -25.89071 -22.75418 -21.63974 -21.47238 -19.59246 -19.17336 -18.07605 -17.12104 -16.49598 -15.65952 -15.26842 -15.16560 -14.76164 -14.19073 -14.00823 -13.58363 -13.34701 -13.12651 -13.02109 -12.73563 -12.39560 -12.21311 -12.04214 -11.70204 -11.36162 -11.26447 -10.90951 -10.84663 -10.40741 -9.98357 -9.94172 -9.47246 -9.27653 -9.00345 -8.29781 -8.00191 -7.32758 -7.16903 -5.19549 2.38202 2.79240 3.23271 3.41431 3.47281 3.90681 4.12186 4.12428 4.29517 4.39805 4.51255 4.80821 4.86740 4.89768 5.22002 5.29573 5.31977 5.35102 5.41458 5.52655 5.66424 5.71772 5.81218 5.91802 6.07724 6.24240 6.39586 6.76674 6.93548 7.14472 7.41125 7.42506 7.50643 7.83364 7.91704 8.28852 8.55184 8.83642 9.91777 10.01970 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.005316 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.297215 B = 5266.101324 C = 6050.401658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.407 5.407 3 N -0.300 5.300 4 C 0.079 3.921 5 C 0.168 3.832 6 H 0.092 0.908 7 C -0.144 4.144 8 C -0.155 4.155 9 C 0.052 3.948 10 O -0.372 6.372 11 C -0.288 4.288 12 C 0.340 3.660 13 N -0.666 5.666 14 C 0.549 3.451 15 O -0.592 6.592 16 C -0.601 4.601 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.804 5.804 20 Si 1.084 2.916 21 H -0.248 1.248 22 H -0.305 1.305 23 H -0.281 1.281 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.175 0.825 34 H 0.394 0.606 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 15.521 -2.808 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.198 5.198 3 N -0.125 5.125 4 C -0.086 4.086 5 C 0.109 3.891 6 H 0.109 0.891 7 C -0.182 4.182 8 C -0.193 4.193 9 C -0.025 4.025 10 O -0.290 6.290 11 C -0.321 4.321 12 C 0.119 3.881 13 N -0.311 5.311 14 C 0.362 3.638 15 O -0.482 6.482 16 C -0.635 4.635 17 H 0.092 0.908 18 C -0.145 4.145 19 N -0.429 5.429 20 Si 0.910 3.090 21 H -0.172 1.172 22 H -0.234 1.234 23 H -0.206 1.206 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.192 0.808 34 H 0.228 0.772 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.171 15.798 -3.195 16.119 hybrid contribution -1.907 -0.248 0.758 2.067 sum -1.736 15.551 -2.437 15.836 Atomic orbital electron populations 1.21623 0.75511 1.03671 1.02598 1.48581 1.05567 1.02733 1.62887 1.77191 1.01022 1.05535 1.28722 1.21703 0.92531 0.93779 1.00598 1.21123 0.93290 0.90361 0.84319 0.89062 1.23310 1.01402 0.94994 0.98544 1.23144 1.00727 0.99755 0.95688 1.23079 0.98619 0.85826 0.94997 1.88514 1.86323 1.22999 1.31199 1.21544 0.96718 0.92765 1.21028 1.18548 0.90458 0.81417 0.97717 1.43416 1.10896 1.01084 1.75660 1.16946 0.84414 0.84579 0.77882 1.90424 1.16575 1.83041 1.58161 1.20962 1.00640 0.90536 1.51375 0.90817 1.27156 1.02099 0.91332 0.93904 1.70571 1.25776 1.22623 1.23882 0.83287 0.73656 0.77356 0.74746 1.17215 1.23396 1.20640 0.91545 0.89627 0.90419 0.89653 0.89699 0.90187 0.90456 0.91661 0.91568 0.80765 0.77215 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.40 11.30 59.84 0.68 2.08 16 2 N -0.41 -7.60 4.05 -67.07 -0.27 -7.87 16 3 N -0.30 -5.89 12.31 33.62 0.41 -5.47 16 4 C 0.08 1.57 6.20 -82.49 -0.51 1.06 16 5 C 0.17 2.71 3.94 -26.86 -0.11 2.61 16 6 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 7 C -0.14 -1.83 6.57 -24.42 -0.16 -1.99 16 8 C -0.16 -1.54 7.02 -24.72 -0.17 -1.71 16 9 C 0.05 0.61 7.80 37.88 0.30 0.90 16 10 O -0.37 -6.18 11.03 -35.23 -0.39 -6.57 16 11 C -0.29 -6.46 9.57 -39.69 -0.38 -6.84 16 12 C 0.34 7.33 7.68 -153.09 -1.18 6.15 16 13 N -0.67 -14.48 5.37 -13.98 -0.08 -14.55 16 14 C 0.55 14.19 7.04 -15.00 -0.11 14.09 16 15 O -0.59 -16.44 9.85 5.08 0.05 -16.39 16 16 C -0.60 -15.92 9.59 -37.60 -0.36 -16.28 16 17 H 0.07 1.90 8.06 -52.49 -0.42 1.48 16 18 C 0.08 2.11 5.47 -17.34 -0.09 2.01 16 19 N -0.80 -21.75 13.64 55.56 0.76 -20.99 16 20 Si 1.08 26.20 27.28 -169.99 -4.64 21.56 16 21 H -0.25 -6.21 5.86 56.52 0.33 -5.88 16 22 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.16 7.84 -51.93 -0.41 0.75 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.18 4.25 5.82 -52.49 -0.31 3.95 16 34 H 0.39 7.24 7.95 -40.82 -0.32 6.92 16 35 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -32.30 296.81 -6.23 -38.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.45 Total: 5.21 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.10 Total: 2.07 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.83 Total: -48.89 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.34 Total: -22.96 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -4.64 Total: 21.56 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.30 -6.23 -38.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321143760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.106 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds