Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40080 * 126.12011 * 2 1 4 4 C 1.30991 * 108.48773 * 180.27012 * 3 2 1 5 5 C 1.50697 * 125.73269 * 179.78132 * 4 3 2 6 6 H 1.09002 * 110.27936 * 184.29899 * 5 4 3 7 7 C 1.54948 * 110.30640 * 306.39369 * 5 4 3 8 8 C 1.55420 * 100.89208 * 155.28818 * 7 5 4 9 9 C 1.54385 * 102.30661 * 325.98414 * 8 7 5 10 10 O 1.43242 * 107.58723 * 21.29257 * 9 8 7 11 11 C 1.39475 * 108.54320 * 359.77884 * 4 3 2 12 12 C 1.36070 * 126.12109 * 179.89329 * 2 1 3 13 13 N 1.38585 * 126.30910 * 359.97438 * 12 2 1 14 14 C 1.34779 * 119.99486 * 179.71594 * 13 12 2 15 15 O 1.21818 * 120.00307 * 359.97438 * 14 13 12 16 16 C 1.41534 * 119.99883 * 179.97438 * 14 13 12 17 17 H 1.07993 * 119.99858 * 344.86864 * 16 14 13 18 18 C 1.40166 * 119.99628 * 164.86341 * 16 14 13 19 19 N 1.30622 * 119.99551 * 155.21446 * 18 16 14 20 20 Si 1.86795 * 120.00095 * 335.20734 * 18 16 14 21 21 H 1.48499 * 109.47300 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47558 * 239.99959 * 20 18 16 23 23 H 1.48508 * 109.46862 * 120.00500 * 20 18 16 24 24 H 1.09000 * 109.46905 * 270.11178 * 1 2 3 25 25 H 1.09001 * 109.47514 * 30.11099 * 1 2 3 26 26 H 1.09003 * 109.47234 * 150.10992 * 1 2 3 27 27 H 1.09006 * 111.12083 * 273.27686 * 7 5 4 28 28 H 1.08994 * 111.13083 * 37.43603 * 7 5 4 29 29 H 1.09001 * 110.87755 * 207.75086 * 8 7 5 30 30 H 1.08994 * 110.93243 * 84.24914 * 8 7 5 31 31 H 1.08990 * 109.83227 * 261.77254 * 9 8 7 32 32 H 1.08996 * 109.89819 * 140.84540 * 9 8 7 33 33 H 1.07996 * 126.08210 * 179.97438 * 11 4 3 34 34 H 0.97000 * 120.00713 * 359.71663 * 13 12 2 35 35 H 0.96992 * 120.00048 * 1.85487 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2907 1.1315 0.0000 4 6 3.5390 0.7348 -0.0059 5 6 4.7483 1.6340 -0.0126 6 1 5.6595 1.0412 -0.0933 7 6 4.6595 2.6458 -1.1828 8 6 5.5537 3.7971 -0.6441 9 6 5.2792 3.7441 0.8742 10 8 4.7794 2.4366 1.1783 11 6 3.5612 -0.6598 -0.0047 12 6 2.2670 -1.0991 0.0020 13 7 1.8487 -2.4203 0.0050 14 6 2.7581 -3.4151 0.0010 15 8 3.9477 -3.1528 -0.0057 16 6 2.3310 -4.7644 0.0046 17 1 1.3086 -5.0065 0.2545 18 6 3.2349 -5.7864 -0.3164 19 7 3.0363 -6.9978 0.1301 20 14 4.7233 -5.4161 -1.3825 21 1 4.7196 -3.9788 -1.7558 22 1 4.6709 -6.2475 -2.6120 23 1 5.9633 -5.7277 -0.6269 24 1 -0.3633 0.0020 1.0277 25 1 -0.3634 0.8890 -0.5155 26 1 -0.3634 -0.8910 -0.5121 27 1 5.0706 2.2230 -2.0996 28 1 3.6341 2.9832 -1.3335 29 1 5.2453 4.7560 -1.0608 30 1 6.6055 3.6046 -0.8552 31 1 4.5365 4.4954 1.1422 32 1 6.2025 3.9243 1.4247 33 1 4.4440 -1.2819 -0.0089 34 1 0.9015 -2.6292 0.0099 35 1 2.2493 -7.1960 0.6611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321143760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -34.271373 kcal Electronic energy + Delta-G solvation = -19960.772872 eV Core-core repulsion = 16766.354209 eV Total energy + Delta-G solvation = -3194.418663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.34359 -40.33777 -39.73240 -35.74997 -35.18337 -34.14161 -32.99820 -30.78981 -30.19605 -28.24658 -27.13542 -23.96278 -23.30041 -22.50293 -21.23303 -20.88329 -19.93446 -18.65007 -17.64874 -17.10695 -16.78372 -16.66323 -16.18234 -15.90461 -15.66216 -15.10293 -14.83796 -14.63453 -14.35061 -14.19642 -14.01897 -13.62885 -13.31850 -12.88761 -12.66943 -12.56225 -12.30787 -12.19756 -11.81872 -11.78210 -11.50076 -11.19860 -11.04718 -10.55852 -10.04384 -9.75888 -9.40263 -8.91628 -7.27155 0.79787 1.33638 1.40665 1.53285 1.68900 1.96970 2.15879 2.39287 2.60874 3.11045 3.27116 3.44009 3.69939 3.74396 4.01996 4.21566 4.27676 4.34830 4.39765 4.53246 4.59254 4.77361 4.84957 4.91655 4.97886 5.04634 5.13577 5.27963 5.28570 5.43182 5.51495 5.77771 5.85587 6.07663 6.23706 6.48653 6.67638 7.03664 7.92326 7.94535 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.005316 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.297215 B = 5266.101324 C = 6050.401658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.399 5.399 3 N -0.300 5.300 4 C 0.078 3.922 5 C 0.160 3.840 6 H 0.092 0.908 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.041 3.959 10 O -0.403 6.403 11 C -0.318 4.318 12 C 0.324 3.676 13 N -0.656 5.656 14 C 0.547 3.453 15 O -0.615 6.615 16 C -0.614 4.614 17 H 0.075 0.925 18 C 0.049 3.951 19 N -0.817 5.817 20 Si 1.115 2.885 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 17.287 -3.525 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.190 5.190 3 N -0.125 5.125 4 C -0.088 4.088 5 C 0.101 3.899 6 H 0.110 0.890 7 C -0.177 4.177 8 C -0.179 4.179 9 C -0.035 4.035 10 O -0.323 6.323 11 C -0.350 4.350 12 C 0.102 3.898 13 N -0.302 5.302 14 C 0.359 3.641 15 O -0.507 6.507 16 C -0.649 4.649 17 H 0.094 0.906 18 C -0.171 4.171 19 N -0.442 5.442 20 Si 0.938 3.062 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.207 1.207 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.217 17.580 -3.912 18.011 hybrid contribution -1.877 -0.699 1.046 2.259 sum -2.094 16.880 -2.867 17.250 Atomic orbital electron populations 1.22113 0.72210 1.05830 1.04394 1.48936 1.07275 1.01337 1.61407 1.77142 1.01109 1.05971 1.28289 1.22137 0.93734 0.93198 0.99724 1.21277 0.91737 0.90964 0.85914 0.88994 1.23270 1.01648 0.95059 0.97737 1.23136 1.01189 0.99691 0.93875 1.23375 0.99515 0.83832 0.96815 1.88467 1.86866 1.25054 1.31865 1.21491 0.96621 0.94141 1.22795 1.18483 0.91021 0.81779 0.98522 1.42905 1.11218 1.00812 1.75226 1.16917 0.84509 0.85211 0.77510 1.90430 1.17729 1.83717 1.58794 1.21083 1.00793 0.91086 1.51930 0.90647 1.27880 1.03527 0.91402 0.94331 1.70589 1.26152 1.22857 1.24587 0.82870 0.72107 0.76390 0.74837 1.19197 1.20867 1.20703 0.89883 0.87428 0.88418 0.88395 0.90783 0.87754 0.88692 0.91001 0.89833 0.83375 0.75315 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.20 11.30 127.77 1.44 3.65 16 2 N -0.40 -14.38 4.05 -366.11 -1.48 -15.86 16 3 N -0.30 -11.50 12.31 -47.56 -0.59 -12.09 16 4 C 0.08 3.08 6.20 42.98 0.27 3.35 16 5 C 0.16 5.10 3.94 30.51 0.12 5.22 16 6 H 0.09 2.83 8.13 -2.39 -0.02 2.81 16 7 C -0.14 -3.27 6.57 32.09 0.21 -3.06 16 8 C -0.14 -2.38 7.02 31.90 0.22 -2.15 16 9 C 0.04 0.87 7.80 72.45 0.56 1.44 16 10 O -0.40 -13.12 11.03 -148.98 -1.64 -14.76 16 11 C -0.32 -14.56 9.57 22.20 0.21 -14.34 16 12 C 0.32 13.91 7.68 131.49 1.01 14.92 16 13 N -0.66 -28.31 5.37 -316.32 -1.70 -30.01 16 14 C 0.55 28.48 7.04 85.05 0.60 29.08 16 15 O -0.62 -34.82 9.85 -4.73 -0.05 -34.87 16 16 C -0.61 -32.61 9.59 23.55 0.23 -32.38 16 17 H 0.08 3.88 8.06 -2.91 -0.02 3.86 16 18 C 0.05 2.63 5.47 85.34 0.47 3.09 16 19 N -0.82 -43.98 13.64 21.86 0.30 -43.68 16 20 Si 1.11 53.17 27.28 68.60 1.87 55.04 16 21 H -0.27 -13.49 5.86 99.48 0.58 -12.90 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.10 1.90 7.53 -2.39 -0.02 1.88 16 27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 1.90 7.84 -2.39 -0.02 1.88 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.15 7.56 5.82 -2.91 -0.02 7.54 16 34 H 0.41 14.63 7.95 -92.71 -0.74 13.89 16 35 H 0.29 14.79 8.72 -92.71 -0.81 13.98 16 Total: -1.00 -69.70 296.81 2.28 -67.42 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.22 Total: 20.01 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.34 Total: 8.80 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.47 Total: -101.64 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.69 Total: -49.63 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 1.87 Total: 55.04 kcal Total: -69.70 2.28 -67.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321143760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.150 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds