Wall clock time and date at job start Mon Mar 30 2020 00:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35038 * 124.88708 * 2 1 4 4 C 1.35366 * 107.22711 * 179.72706 * 3 2 1 5 5 C 1.41498 * 105.50653 * 0.41623 * 4 3 2 6 6 C 1.47706 * 126.52346 * 179.84212 * 5 4 3 7 7 O 1.21575 * 119.99845 * 359.71525 * 6 5 4 8 8 N 1.34770 * 120.00652 * 179.71186 * 6 5 4 9 9 C 1.47433 * 125.64428 * 359.95900 * 8 6 5 10 10 C 1.55393 * 104.87396 * 204.16622 * 9 8 6 11 11 C 1.55158 * 101.36604 * 323.02138 * 10 9 8 12 12 O 1.42905 * 110.71665 * 277.04214 * 11 10 9 13 13 C 1.50698 * 110.72071 * 153.94900 * 11 10 9 14 14 H 1.08000 * 120.00108 * 2.43313 * 13 11 10 15 15 C 1.37875 * 119.99880 * 182.43864 * 13 11 10 16 16 N 1.31516 * 120.00122 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47289 * 89.99941 * 17 15 13 19 19 H 1.48504 * 109.47431 * 210.00143 * 17 15 13 20 20 H 1.48509 * 109.47375 * 330.00068 * 17 15 13 21 21 C 1.47023 * 125.65372 * 180.02562 * 8 6 5 22 22 N 1.28472 * 124.88451 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46865 * 270.02399 * 1 2 3 24 24 H 1.09004 * 109.46881 * 30.01758 * 1 2 3 25 25 H 1.08996 * 109.47626 * 150.02230 * 1 2 3 26 26 H 1.07994 * 126.38578 * 0.02562 * 3 2 1 27 27 H 1.07997 * 127.24760 * 180.25620 * 4 3 2 28 28 H 1.08994 * 110.36621 * 323.00423 * 9 8 6 29 29 H 1.09005 * 110.36538 * 85.21633 * 9 8 6 30 30 H 1.09003 * 111.18887 * 204.98028 * 10 9 8 31 31 H 1.08998 * 111.02037 * 80.98017 * 10 9 8 32 32 H 0.96696 * 114.00036 * 177.55969 * 12 11 10 33 33 H 0.97000 * 119.99972 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.87979 * 59.49193 * 21 8 6 35 35 H 1.08999 * 110.00722 * 298.39314 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7169 -0.0001 6 6 4.6272 -1.6400 -0.0002 7 8 5.7597 -1.1978 0.0003 8 7 4.4240 -2.9723 -0.0007 9 6 3.1101 -3.6410 -0.0004 10 6 3.3765 -5.0434 0.6136 11 6 4.7742 -5.3738 0.0266 12 8 4.6549 -5.9070 -1.2938 13 6 5.5153 -6.3330 0.9219 14 1 5.0391 -6.7197 1.8108 15 6 6.8014 -6.7170 0.6063 16 7 7.3812 -6.2464 -0.4763 17 14 7.7203 -7.9055 1.7163 18 1 7.4609 -9.2987 1.2725 19 1 9.1770 -7.6258 1.6431 20 1 7.2538 -7.7370 3.1161 21 6 5.4759 -3.9995 -0.0004 22 7 2.1997 -1.0539 -0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5134 26 1 1.8906 2.1305 0.0004 27 1 4.4108 1.3179 0.0118 28 1 2.4022 -3.0861 0.6151 29 1 2.7329 -3.7367 -1.0186 30 1 2.6321 -5.7669 0.2811 31 1 3.4117 -4.9935 1.7019 32 1 5.5022 -6.0953 -1.7200 33 1 8.2861 -6.5162 -0.6982 34 1 6.1040 -3.8865 0.8832 35 1 6.0835 -3.9114 -0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326384459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:53 Heat of formation + Delta-G solvation = 7.123737 kcal Electronic energy + Delta-G solvation = -20315.831539 eV Core-core repulsion = 17123.207903 eV Total energy + Delta-G solvation = -3192.623636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51068 -39.04351 -37.02960 -34.21454 -33.37425 -32.14065 -30.78003 -29.88397 -28.03508 -27.20675 -25.11923 -23.13846 -21.69271 -21.17695 -19.54519 -18.82892 -17.13310 -17.10951 -16.25077 -16.23119 -15.33063 -14.71996 -14.61464 -14.22366 -13.88147 -13.29646 -13.10845 -12.89990 -12.81169 -12.71106 -12.64626 -11.92428 -11.62300 -11.37757 -11.05101 -10.91070 -10.58216 -10.43898 -10.39481 -10.06293 -9.50333 -9.24039 -9.16745 -8.96687 -8.61706 -8.24888 -7.75625 -6.23503 -4.31916 1.82007 2.27369 2.48751 3.24777 3.32217 3.35157 3.73949 3.91272 4.31148 4.35866 4.76424 4.84809 4.93874 5.04968 5.12475 5.35690 5.59678 5.73458 5.84659 5.93569 5.99714 6.20470 6.29639 6.55106 6.62711 6.79073 6.86594 6.96010 7.10834 7.33888 7.45111 7.78679 7.97911 8.07727 8.31237 8.70764 8.83233 9.36261 9.46596 10.84378 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.005007 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.351375 B = 5590.974644 C = 5966.501907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.294 5.294 3 C -0.025 4.025 4 C -0.182 4.182 5 C -0.001 4.001 6 C 0.602 3.398 7 O -0.547 6.547 8 N -0.596 5.596 9 C 0.107 3.893 10 C -0.119 4.119 11 C 0.248 3.752 12 O -0.585 6.585 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.103 3.897 22 N -0.258 5.258 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.179 0.821 27 H 0.161 0.839 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.383 0.617 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.439 11.918 0.685 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.082 5.082 3 C -0.168 4.168 4 C -0.210 4.210 5 C -0.162 4.162 6 C 0.387 3.613 7 O -0.424 6.424 8 N -0.328 5.328 9 C -0.016 4.016 10 C -0.157 4.157 11 C 0.207 3.793 12 O -0.394 6.394 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.018 4.018 22 N -0.094 5.094 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.196 0.804 27 H 0.178 0.822 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.132 11.351 0.705 18.140 hybrid contribution 1.602 0.156 0.403 1.660 sum -12.530 11.507 1.107 17.048 Atomic orbital electron populations 1.22110 0.73599 1.05247 1.04215 1.45503 1.07681 1.03344 1.51668 1.22789 0.91064 0.93597 1.09342 1.21783 0.97214 0.93690 1.08312 1.22155 0.90772 0.94168 1.09086 1.16562 0.86329 0.80517 0.77845 1.90758 1.22621 1.76541 1.52475 1.48604 1.10150 1.04494 1.69540 1.22493 0.84842 0.93541 1.00742 1.22862 0.98787 0.94355 0.99711 1.19503 0.89735 0.88153 0.81893 1.86095 1.36643 1.85914 1.30786 1.21534 0.99047 1.27329 1.09612 0.91529 1.25075 0.97178 0.95722 0.95301 1.69648 1.15010 1.43822 1.24959 0.86403 0.78753 0.80900 0.80839 1.20415 1.21003 1.19721 1.23052 0.89507 0.87230 1.02033 1.73735 1.03218 1.13168 1.19243 0.89930 0.88914 0.88565 0.80391 0.82184 0.90383 0.92034 0.90617 0.90683 0.76570 0.91981 0.91418 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.31 59.84 0.68 1.23 16 2 N -0.29 -3.45 3.70 -68.13 -0.25 -3.70 16 3 C -0.03 -0.28 11.46 -17.17 -0.20 -0.47 16 4 C -0.18 -2.68 10.81 -39.36 -0.43 -3.10 16 5 C 0.00 -0.02 6.97 -82.77 -0.58 -0.60 16 6 C 0.60 13.41 7.85 -12.40 -0.10 13.31 16 7 O -0.55 -13.67 17.25 5.30 0.09 -13.58 16 8 N -0.60 -13.49 3.33 -171.37 -0.57 -14.06 16 9 C 0.11 2.12 6.16 -2.26 -0.01 2.11 16 10 C -0.12 -2.52 6.26 -24.32 -0.15 -2.67 16 11 C 0.25 6.22 0.85 -89.94 -0.08 6.14 16 12 O -0.59 -15.22 13.08 -35.23 -0.46 -15.69 16 13 C -0.54 -14.38 8.11 -34.44 -0.28 -14.65 16 14 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 15 C 0.07 1.87 5.27 -17.82 -0.09 1.77 16 16 N -0.90 -24.31 10.96 55.43 0.61 -23.71 16 17 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.10 2.62 5.38 -3.06 -0.02 2.61 16 22 N -0.26 -4.12 9.09 33.42 0.30 -3.82 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.08 1.41 6.20 -51.93 -0.32 1.08 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 32 H 0.38 10.19 7.23 45.56 0.33 10.51 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 34 H 0.07 1.84 7.82 -51.93 -0.41 1.44 16 35 H 0.07 1.83 7.99 -51.93 -0.42 1.41 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -32.80 298.85 -5.78 -38.58 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.73 Total: 10.04 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.25 Total: 5.66 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.09 Total: -45.29 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.37 Total: -29.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.80 -5.78 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds