Wall clock time and date at job start Mon Mar 30 2020 00:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35038 * 124.88708 * 2 1 4 4 C 1.35366 * 107.22711 * 179.72706 * 3 2 1 5 5 C 1.41498 * 105.50653 * 0.41623 * 4 3 2 6 6 C 1.47706 * 126.52346 * 179.84212 * 5 4 3 7 7 O 1.21575 * 119.99845 * 359.71525 * 6 5 4 8 8 N 1.34770 * 120.00652 * 179.71186 * 6 5 4 9 9 C 1.47433 * 125.64428 * 359.95900 * 8 6 5 10 10 C 1.55393 * 104.87396 * 204.16622 * 9 8 6 11 11 C 1.55158 * 101.36604 * 323.02138 * 10 9 8 12 12 O 1.42905 * 110.71665 * 277.04214 * 11 10 9 13 13 C 1.50698 * 110.72071 * 153.94900 * 11 10 9 14 14 H 1.08000 * 120.00108 * 2.43313 * 13 11 10 15 15 C 1.37875 * 119.99880 * 182.43864 * 13 11 10 16 16 N 1.31516 * 120.00122 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47289 * 89.99941 * 17 15 13 19 19 H 1.48504 * 109.47431 * 210.00143 * 17 15 13 20 20 H 1.48509 * 109.47375 * 330.00068 * 17 15 13 21 21 C 1.47023 * 125.65372 * 180.02562 * 8 6 5 22 22 N 1.28472 * 124.88451 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46865 * 270.02399 * 1 2 3 24 24 H 1.09004 * 109.46881 * 30.01758 * 1 2 3 25 25 H 1.08996 * 109.47626 * 150.02230 * 1 2 3 26 26 H 1.07994 * 126.38578 * 0.02562 * 3 2 1 27 27 H 1.07997 * 127.24760 * 180.25620 * 4 3 2 28 28 H 1.08994 * 110.36621 * 323.00423 * 9 8 6 29 29 H 1.09005 * 110.36538 * 85.21633 * 9 8 6 30 30 H 1.09003 * 111.18887 * 204.98028 * 10 9 8 31 31 H 1.08998 * 111.02037 * 80.98017 * 10 9 8 32 32 H 0.96696 * 114.00036 * 177.55969 * 12 11 10 33 33 H 0.97000 * 119.99972 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.87979 * 59.49193 * 21 8 6 35 35 H 1.08999 * 110.00722 * 298.39314 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7169 -0.0001 6 6 4.6272 -1.6400 -0.0002 7 8 5.7597 -1.1978 0.0003 8 7 4.4240 -2.9723 -0.0007 9 6 3.1101 -3.6410 -0.0004 10 6 3.3765 -5.0434 0.6136 11 6 4.7742 -5.3738 0.0266 12 8 4.6549 -5.9070 -1.2938 13 6 5.5153 -6.3330 0.9219 14 1 5.0391 -6.7197 1.8108 15 6 6.8014 -6.7170 0.6063 16 7 7.3812 -6.2464 -0.4763 17 14 7.7203 -7.9055 1.7163 18 1 7.4609 -9.2987 1.2725 19 1 9.1770 -7.6258 1.6431 20 1 7.2538 -7.7370 3.1161 21 6 5.4759 -3.9995 -0.0004 22 7 2.1997 -1.0539 -0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5134 26 1 1.8906 2.1305 0.0004 27 1 4.4108 1.3179 0.0118 28 1 2.4022 -3.0861 0.6151 29 1 2.7329 -3.7367 -1.0186 30 1 2.6321 -5.7669 0.2811 31 1 3.4117 -4.9935 1.7019 32 1 5.5022 -6.0953 -1.7200 33 1 8.2861 -6.5162 -0.6982 34 1 6.1040 -3.8865 0.8832 35 1 6.0835 -3.9114 -0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326384459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:53 Heat of formation + Delta-G solvation = -18.121058 kcal Electronic energy + Delta-G solvation = -20316.926236 eV Core-core repulsion = 17123.207903 eV Total energy + Delta-G solvation = -3193.718333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.56857 -40.82913 -38.90255 -36.12983 -34.32757 -34.21498 -32.04387 -31.47888 -29.73304 -28.47446 -26.87632 -24.75617 -23.05809 -22.24312 -21.44996 -20.29968 -19.12945 -18.36789 -17.63623 -17.37706 -17.17415 -16.45377 -16.33095 -15.99927 -14.88309 -14.81563 -14.80720 -14.66221 -14.11806 -13.77814 -13.55538 -13.48539 -13.32295 -13.25503 -12.86470 -12.60128 -12.34642 -12.28134 -12.18313 -11.73322 -11.26540 -11.16646 -10.64534 -10.31074 -10.21998 -10.05251 -9.57623 -8.27051 -6.43631 0.53213 1.23120 1.41799 1.43324 1.53620 1.62682 2.13376 2.34314 2.38853 2.99099 3.32634 3.79189 3.86609 4.02816 4.08343 4.26199 4.38519 4.47358 4.51846 4.63865 4.71105 4.75381 4.80332 4.81800 4.98330 5.09938 5.19873 5.32450 5.39298 5.50327 5.73105 5.96578 6.03980 6.54741 6.64456 6.85301 7.14211 7.27141 7.34928 8.79601 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.005007 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.351375 B = 5590.974644 C = 5966.501907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.280 5.280 3 C 0.009 3.991 4 C -0.208 4.208 5 C -0.044 4.044 6 C 0.595 3.405 7 O -0.590 6.590 8 N -0.605 5.605 9 C 0.119 3.881 10 C -0.112 4.112 11 C 0.235 3.765 12 O -0.588 6.588 13 C -0.559 4.559 14 H 0.069 0.931 15 C 0.025 3.975 16 N -0.918 5.918 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.120 3.880 22 N -0.272 5.272 23 H 0.102 0.898 24 H 0.133 0.867 25 H 0.097 0.903 26 H 0.236 0.764 27 H 0.160 0.840 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.377 0.623 33 H 0.271 0.729 34 H 0.037 0.963 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 13.237 1.425 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.069 5.069 3 C -0.134 4.134 4 C -0.236 4.236 5 C -0.201 4.201 6 C 0.384 3.616 7 O -0.470 6.470 8 N -0.336 5.336 9 C -0.003 4.003 10 C -0.150 4.150 11 C 0.194 3.806 12 O -0.396 6.396 13 C -0.597 4.597 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.003 4.003 22 N -0.111 5.111 23 H 0.121 0.879 24 H 0.151 0.849 25 H 0.115 0.885 26 H 0.252 0.748 27 H 0.178 0.822 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.140 12.663 1.447 21.360 hybrid contribution 2.393 -0.139 0.149 2.401 sum -14.748 12.524 1.595 19.414 Atomic orbital electron populations 1.22667 0.70013 1.07402 1.06221 1.46086 1.09545 1.02650 1.48609 1.23481 0.89179 0.95392 1.05382 1.21999 0.99447 0.92198 1.09939 1.21626 0.90447 0.94695 1.13381 1.17260 0.87357 0.80646 0.76383 1.90703 1.24806 1.77265 1.54223 1.48678 1.10315 1.04594 1.70017 1.22504 0.83867 0.92743 1.01137 1.22867 0.96679 0.95403 1.00055 1.19700 0.92080 0.87356 0.81424 1.86081 1.36188 1.85992 1.31374 1.21844 0.99782 1.27981 1.10110 0.91306 1.25854 0.97951 0.97198 0.96556 1.69759 1.15187 1.44588 1.26171 0.85416 0.77249 0.78950 0.79192 1.19598 1.21014 1.19160 1.22609 0.89892 0.88994 0.98847 1.73577 1.02489 1.15203 1.19782 0.87929 0.84879 0.88461 0.74819 0.82237 0.87970 0.91974 0.88966 0.89902 0.77322 0.91947 0.94452 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.31 127.77 1.44 1.99 16 2 N -0.28 -5.46 3.70 -369.47 -1.37 -6.83 16 3 C 0.01 0.16 11.46 83.54 0.96 1.11 16 4 C -0.21 -5.83 10.81 22.41 0.24 -5.59 16 5 C -0.04 -1.60 6.97 42.45 0.30 -1.30 16 6 C 0.59 27.64 7.85 86.75 0.68 28.33 16 7 O -0.59 -31.32 17.25 -3.95 -0.07 -31.39 16 8 N -0.60 -28.37 3.33 -814.36 -2.71 -31.08 16 9 C 0.12 4.71 6.16 87.02 0.54 5.25 16 10 C -0.11 -4.70 6.26 32.16 0.20 -4.50 16 11 C 0.23 12.08 0.85 -10.35 -0.01 12.08 16 12 O -0.59 -31.40 13.08 -148.98 -1.95 -33.35 16 13 C -0.56 -30.46 8.11 25.60 0.21 -30.25 16 14 H 0.07 3.63 7.77 -2.91 -0.02 3.60 16 15 C 0.03 1.36 5.27 84.65 0.45 1.80 16 16 N -0.92 -51.52 10.96 21.45 0.23 -51.28 16 17 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 C 0.12 6.42 5.38 86.73 0.47 6.88 16 22 N -0.27 -8.17 9.09 -48.18 -0.44 -8.61 16 23 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.13 -0.03 8.13 -2.38 -0.02 -0.05 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 27 H 0.16 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.10 3.54 6.20 -2.39 -0.01 3.53 16 29 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 32 H 0.38 20.89 7.23 -74.06 -0.54 20.35 16 33 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.04 2.17 7.82 -2.39 -0.02 2.15 16 35 H 0.03 1.98 7.99 -2.39 -0.02 1.96 16 Total: -1.00 -75.86 298.85 1.78 -74.09 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.58 Total: 27.58 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.47 Total: 15.79 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.28 Total: -97.79 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -2.02 Total: -64.74 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.86 1.78 -74.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.965 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds