Wall clock time and date at job start Mon Mar 30 2020 00:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 109.47509 * 2 1 4 4 C 1.50703 * 109.46663 * 240.00343 * 2 1 3 5 5 H 1.08003 * 120.00030 * 240.00014 * 4 2 1 6 6 C 1.37882 * 119.99985 * 60.00294 * 4 2 1 7 7 N 1.31513 * 120.00175 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47323 * 59.99747 * 8 6 4 10 10 H 1.48497 * 109.47160 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47229 * 299.99654 * 8 6 4 12 12 C 1.50700 * 109.47076 * 120.00705 * 2 1 3 13 13 O 1.21278 * 119.99981 * 105.44655 * 12 2 1 14 14 N 1.34772 * 119.99629 * 285.15962 * 12 2 1 15 15 C 1.47421 * 125.65268 * 353.61682 * 14 12 2 16 16 C 1.55126 * 104.72432 * 155.81101 * 15 14 12 17 17 C 1.55154 * 101.48611 * 37.29892 * 16 15 14 18 18 C 1.47024 * 125.64419 * 173.92043 * 14 12 2 19 19 H 1.09004 * 109.88478 * 300.43656 * 18 14 12 20 20 C 1.50694 * 109.88665 * 61.45589 * 18 14 12 21 21 N 1.34495 * 126.28909 * 224.99903 * 20 18 14 22 22 C 1.31129 * 105.61769 * 179.97438 * 21 20 18 23 23 O 1.33647 * 106.89580 * 0.02562 * 22 21 20 24 24 N 1.21304 * 109.81087 * 359.72908 * 23 22 21 25 25 H 1.09004 * 109.47108 * 293.49189 * 1 2 3 26 26 H 1.09000 * 109.47681 * 53.49166 * 1 2 3 27 27 H 1.09002 * 109.47481 * 173.49634 * 1 2 3 28 28 H 0.96994 * 120.00004 * 180.02562 * 7 6 4 29 29 H 1.09004 * 110.36439 * 274.74672 * 15 14 12 30 30 H 1.09004 * 110.36491 * 37.06397 * 15 14 12 31 31 H 1.09000 * 111.19327 * 279.19375 * 16 15 14 32 32 H 1.09001 * 110.93619 * 155.28674 * 16 15 14 33 33 H 1.08995 * 110.72153 * 205.96987 * 17 16 15 34 34 H 1.09002 * 110.72518 * 82.68855 * 17 16 15 35 35 H 1.08003 * 126.55409 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3222 -1.1193 -4.0081 9 1 1.8277 -2.5196 -4.0084 10 1 1.8266 -0.4196 -5.2205 11 1 3.8072 -1.1188 -4.0080 12 6 2.0323 -0.7106 1.2304 13 8 2.4981 -1.8265 1.1384 14 7 1.9691 -0.1036 2.4320 15 6 1.5596 1.2927 2.6689 16 6 1.0597 1.3132 4.1373 17 6 2.0571 0.3383 4.8169 18 6 2.3032 -0.7224 3.7231 19 1 1.6637 -1.5881 3.8958 20 6 3.7498 -1.1444 3.7302 21 7 4.2342 -2.3191 4.1711 22 6 5.5313 -2.2565 3.9897 23 8 5.7911 -1.0609 3.4519 24 7 4.7579 -0.4421 3.3069 25 1 -0.3633 0.4097 0.9425 26 1 -0.3634 0.6114 -0.8260 27 1 -0.3634 -1.0210 -0.1164 28 1 0.7080 1.1611 -3.4843 29 1 2.4099 1.9635 2.5457 30 1 0.7536 1.5720 1.9903 31 1 0.0379 0.9410 4.2109 32 1 1.1405 2.3137 4.5622 33 1 1.6103 -0.1162 5.7011 34 1 2.9844 0.8511 5.0722 35 1 6.2521 -3.0243 4.2292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329309250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:23 Heat of formation + Delta-G solvation = 38.172589 kcal Electronic energy + Delta-G solvation = -20694.128263 eV Core-core repulsion = 17502.851006 eV Total energy + Delta-G solvation = -3191.277257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.39368 -39.63500 -37.03044 -35.44910 -33.76856 -32.25978 -31.45304 -30.16370 -28.93128 -25.16558 -24.45223 -23.93827 -23.01217 -21.70758 -20.71179 -18.82760 -17.80553 -17.63516 -16.47426 -16.07020 -15.88343 -15.24860 -14.80467 -14.22045 -13.88048 -13.45601 -13.29718 -12.84742 -12.45542 -12.18548 -12.12279 -11.95957 -11.51440 -11.28438 -11.06247 -10.97655 -10.93769 -10.81404 -10.72031 -10.58907 -10.26394 -9.98345 -9.89514 -8.98896 -8.62724 -8.36129 -8.22639 -6.03507 -4.06049 1.40949 2.41735 3.18997 3.36174 3.38180 3.41038 3.49145 3.60322 3.96731 4.34803 4.46422 4.60924 4.71248 4.92325 5.22263 5.30163 5.36802 5.56791 5.66569 5.80552 5.81305 5.93247 5.96393 6.07154 6.15701 6.24989 6.64886 6.77192 6.84122 6.97355 7.46936 7.74619 7.98149 8.08627 8.36573 8.39943 9.00207 9.16158 9.58663 11.04655 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.006668 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.199841 B = 4198.098535 C = 5128.803425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.039 3.961 3 H 0.048 0.952 4 C -0.502 4.502 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.538 3.462 13 O -0.537 6.537 14 N -0.623 5.623 15 C 0.101 3.899 16 C -0.130 4.130 17 C -0.119 4.119 18 C 0.224 3.776 19 H 0.099 0.901 20 C 0.175 3.825 21 N -0.478 5.478 22 C 0.148 3.852 23 O 0.075 5.925 24 N -0.366 5.366 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 0.909 15.965 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.017 3.983 3 H 0.066 0.934 4 C -0.541 4.541 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.331 3.669 13 O -0.411 6.411 14 N -0.361 5.361 15 C -0.022 4.022 16 C -0.168 4.168 17 C -0.158 4.158 18 C 0.117 3.883 19 H 0.117 0.883 20 C -0.099 4.099 21 N -0.211 5.211 22 C -0.094 4.094 23 O 0.016 5.984 24 N -0.072 5.072 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.035 0.981 15.418 15.745 hybrid contribution 0.682 -0.770 -0.824 1.318 sum 3.717 0.211 14.594 15.061 Atomic orbital electron populations 1.21723 0.96080 1.01063 0.99720 1.18827 0.94252 0.96621 0.88552 0.93391 1.21061 1.31315 1.12644 0.89064 0.91218 1.24922 0.95062 0.95035 0.99013 1.69868 1.36969 1.22993 1.23673 0.86511 0.79247 0.79783 0.81641 1.20158 1.21246 1.20246 1.21961 0.75823 0.86189 0.82936 1.90552 1.44712 1.20773 1.85093 1.48959 1.69063 1.13133 1.04917 1.22387 1.00142 0.83308 0.96317 1.22844 0.99195 0.99797 0.94998 1.22660 1.00528 0.95917 0.96713 1.19680 0.84795 0.97425 0.86406 0.88336 1.26126 0.99284 0.87096 0.97410 1.71782 1.07272 1.20654 1.21418 1.30350 0.94172 0.90213 0.94632 1.85302 1.29667 1.24990 1.58477 1.74589 0.93029 1.20183 1.19361 0.96687 0.89094 0.94645 0.92871 0.91605 0.89177 0.90139 0.89682 0.89509 0.90572 0.72557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.66 37.15 0.32 -2.71 16 2 C 0.04 1.00 1.88 -92.92 -0.17 0.82 16 3 H 0.05 1.28 7.74 -51.93 -0.40 0.88 16 4 C -0.50 -14.75 8.35 -34.44 -0.29 -15.04 16 5 H 0.07 2.17 6.85 -52.48 -0.36 1.81 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.90 -25.50 11.39 55.43 0.63 -24.86 16 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.54 13.13 6.86 -10.99 -0.08 13.05 16 13 O -0.54 -14.90 15.27 5.56 0.08 -14.81 16 14 N -0.62 -11.98 3.05 -164.18 -0.50 -12.48 16 15 C 0.10 1.54 6.42 -2.41 -0.02 1.53 16 16 C -0.13 -1.42 7.10 -24.47 -0.17 -1.59 16 17 C -0.12 -1.40 6.47 -24.89 -0.16 -1.56 16 18 C 0.22 3.71 3.43 -68.10 -0.23 3.47 16 19 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 20 C 0.18 3.11 6.02 -156.37 -0.94 2.17 16 21 N -0.48 -7.77 11.55 -13.72 -0.16 -7.93 16 22 C 0.15 1.81 13.40 51.99 0.70 2.50 16 23 O 0.08 1.14 11.31 18.09 0.20 1.34 16 24 N -0.37 -6.66 12.16 30.88 0.38 -6.28 16 25 H 0.01 0.29 6.49 -51.93 -0.34 -0.05 16 26 H 0.09 2.31 6.27 -51.93 -0.33 1.99 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.40 5.91 -51.93 -0.31 1.09 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.26 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 295.81 15.07 4.46 4.46 Total: -1.00 -35.76 295.81 -5.30 -41.06 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.23 Total: -2.08 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.14 Total: 4.28 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.35 Total: -51.56 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.29 Total: -13.47 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.76 -5.30 -41.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329309250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.229 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds