Wall clock time and date at job start Mon Mar 30 2020 00:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47112 * 2 1 4 4 C 1.46498 * 120.00039 * 85.02669 * 3 2 1 5 5 C 1.50697 * 109.46842 * 95.43542 * 4 3 2 6 6 H 1.08004 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99986 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47347 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47370 * 120.00178 * 9 7 5 12 12 H 1.48508 * 109.47178 * 239.99959 * 9 7 5 13 13 C 1.34779 * 119.99837 * 265.03198 * 3 2 1 14 14 O 1.21595 * 120.00077 * 5.56268 * 13 3 2 15 15 C 1.47463 * 119.99873 * 185.56795 * 13 3 2 16 16 N 1.31294 * 126.35923 * 354.83892 * 15 13 3 17 17 N 1.28686 * 109.17429 * 179.83226 * 16 15 13 18 18 C 1.30843 * 109.43938 * 0.44113 * 17 16 15 19 19 C 1.50705 * 126.17161 * 179.73576 * 18 17 16 20 20 C 1.53003 * 117.49678 * 8.74310 * 19 18 17 21 21 C 1.53003 * 117.49405 * 300.08238 * 19 18 17 22 22 O 1.33950 * 107.65812 * 359.73069 * 18 17 16 23 23 H 1.09002 * 109.46921 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46887 * 300.00022 * 1 2 3 25 25 H 1.09001 * 109.47466 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.47522 * 119.99595 * 2 1 3 27 27 H 1.08995 * 109.46985 * 240.00418 * 2 1 3 28 28 H 1.08995 * 109.46765 * 215.43701 * 4 3 2 29 29 H 1.09000 * 109.46934 * 335.43551 * 4 3 2 30 30 H 0.97001 * 119.99748 * 179.97438 * 8 7 5 31 31 H 1.08997 * 115.55011 * 154.41860 * 19 18 17 32 32 H 1.08994 * 117.50001 * 0.02562 * 20 19 18 33 33 H 1.08997 * 117.49443 * 145.02828 * 20 19 18 34 34 H 1.08995 * 117.49902 * 214.97630 * 21 19 18 35 35 H 1.09000 * 117.50060 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1588 2.1086 1.2639 5 6 3.5798 1.9961 1.7528 6 1 4.3058 1.4390 1.1792 7 6 3.9534 2.6054 2.9320 8 7 3.0695 3.2842 3.6302 9 14 5.7150 2.4667 3.5377 10 1 6.5059 1.6550 2.5781 11 1 6.3092 3.8232 3.6469 12 1 5.7302 1.8110 4.8701 13 6 2.3383 1.9829 -1.1629 14 8 2.1269 1.4173 -2.2183 15 6 2.9447 3.3271 -1.1551 16 7 3.1395 4.0870 -0.1024 17 7 3.6934 5.1880 -0.4726 18 6 3.8630 5.1755 -1.7699 19 6 4.4728 6.2771 -2.5979 20 6 5.1267 7.4421 -1.8521 21 6 3.7885 7.6453 -2.5673 22 8 3.3969 4.0067 -2.2293 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.9099 3.1583 1.1086 29 1 1.4844 1.6811 2.0059 30 1 3.3322 3.7125 4.4599 31 1 4.9271 5.9626 -3.5375 32 1 5.1162 7.4115 -0.7627 33 1 6.0109 7.8943 -2.3013 34 1 3.7930 8.2310 -3.4864 35 1 2.8970 7.7484 -1.9485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331964838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:19 Heat of formation + Delta-G solvation = 47.938629 kcal Electronic energy + Delta-G solvation = -20360.568911 eV Core-core repulsion = 17169.715141 eV Total energy + Delta-G solvation = -3190.853770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.70740 -39.20324 -37.40687 -35.99405 -35.16263 -32.71403 -31.42264 -29.81012 -27.11279 -25.38400 -24.15726 -23.06977 -22.60926 -22.36994 -21.00262 -19.44601 -17.24454 -16.92475 -16.82775 -16.22743 -16.02007 -15.09533 -14.82215 -14.44879 -14.27762 -13.71092 -12.99901 -12.67422 -12.47356 -12.08794 -12.00569 -11.88019 -11.68136 -11.66272 -11.26164 -11.07641 -10.90450 -10.86542 -10.74706 -10.58553 -10.16447 -9.89719 -9.77711 -9.64386 -9.06762 -8.38330 -7.91895 -6.03132 -4.06022 1.13171 2.21509 2.53989 3.30218 3.38337 3.40753 3.55257 3.63049 3.68000 4.34405 4.46596 4.58507 4.67994 4.79964 4.87293 5.34238 5.45359 5.46876 5.56656 5.66320 5.67050 5.75551 5.79019 5.85262 5.94686 6.04656 6.14050 6.29335 6.54963 6.65119 7.35062 7.47721 7.83990 8.02585 8.17225 8.45963 8.80036 8.94296 9.57614 11.05625 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.008596 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.719950 B = 3256.637158 C = 4857.311995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.560 5.560 4 C 0.222 3.778 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.077 3.923 8 N -0.882 5.882 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.610 3.390 14 O -0.550 6.550 15 C 0.116 3.884 16 N -0.163 5.163 17 N -0.286 5.286 18 C 0.185 3.815 19 C -0.081 4.081 20 C -0.145 4.145 21 C -0.153 4.153 22 O -0.203 6.203 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 4.275 -9.591 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.291 5.291 4 C 0.103 3.897 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.127 4.127 8 N -0.520 5.520 9 Si 0.717 3.283 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.393 3.607 14 O -0.429 6.429 15 C -0.095 4.095 16 N -0.015 5.015 17 N -0.137 5.137 18 C -0.024 4.024 19 C -0.100 4.100 20 C -0.182 4.182 21 C -0.191 4.191 22 O -0.080 6.080 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.304 4.417 -8.746 9.803 hybrid contribution 1.133 -0.457 -0.667 1.392 sum 0.829 3.959 -9.413 10.245 Atomic orbital electron populations 1.22126 0.96073 1.01731 1.02424 1.21450 0.94046 0.81792 1.03291 1.48114 1.59660 1.13750 1.07560 1.20039 0.98010 0.93623 0.78022 1.21200 0.94794 1.33329 1.06779 0.92856 1.24743 0.97002 0.94584 0.96361 1.69910 1.33687 1.33303 1.15138 0.86588 0.85280 0.77890 0.78524 1.20068 1.20826 1.20979 1.15918 0.79138 0.80705 0.84987 1.90776 1.56496 1.64621 1.30965 1.27291 1.03442 0.98770 0.80010 1.75597 1.07920 0.96457 1.21503 1.74792 1.14808 1.16071 1.07997 1.27049 0.97546 0.86116 0.91653 1.20068 1.05632 0.84522 0.99814 1.23169 0.96528 0.97034 1.01499 1.23171 0.97711 0.94881 1.03369 1.84710 1.59232 1.26024 1.38031 0.91859 0.92057 0.92637 0.89515 0.90432 0.91297 0.94154 0.92833 0.84677 0.86667 0.87267 0.87284 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.12 2.06 6.12 -4.04 -0.02 2.03 16 3 N -0.56 -12.15 2.47 -176.32 -0.44 -12.59 16 4 C 0.22 5.46 4.78 -5.20 -0.02 5.43 16 5 C -0.52 -14.05 8.05 -34.44 -0.28 -14.33 16 6 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.08 2.10 5.46 -17.82 -0.10 2.01 16 8 N -0.88 -25.09 13.29 55.43 0.74 -24.35 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.61 13.78 7.62 -12.50 -0.10 13.69 16 14 O -0.55 -12.77 16.66 1.47 0.02 -12.75 16 15 C 0.12 2.62 7.84 -14.03 -0.11 2.51 16 16 N -0.16 -3.90 7.92 32.01 0.25 -3.64 16 17 N -0.29 -6.15 11.85 32.57 0.39 -5.76 16 18 C 0.18 3.35 7.99 -12.70 -0.10 3.25 16 19 C -0.08 -0.99 6.33 -91.77 -0.58 -1.57 16 20 C -0.15 -1.50 10.15 -26.69 -0.27 -1.77 16 21 C -0.15 -1.50 10.24 -26.69 -0.27 -1.78 16 22 O -0.20 -4.15 10.87 1.12 0.01 -4.14 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 27 H 0.08 1.34 7.36 -51.93 -0.38 0.95 16 28 H 0.07 1.83 5.64 -51.93 -0.29 1.53 16 29 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.11 1.43 7.91 -51.93 -0.41 1.02 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -31.81 308.88 -5.29 -37.11 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.43 Total: -2.50 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.48 Total: 7.36 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.94 Total: -46.35 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.04 Total: -16.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.81 -5.29 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331964838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.044 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds