Wall clock time and date at job start Mon Mar 30 2020 00:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47112 * 2 1 4 4 C 1.46498 * 120.00039 * 85.02669 * 3 2 1 5 5 C 1.50697 * 109.46842 * 95.43542 * 4 3 2 6 6 H 1.08004 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99986 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47347 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47370 * 120.00178 * 9 7 5 12 12 H 1.48508 * 109.47178 * 239.99959 * 9 7 5 13 13 C 1.34779 * 119.99837 * 265.03198 * 3 2 1 14 14 O 1.21595 * 120.00077 * 5.56268 * 13 3 2 15 15 C 1.47463 * 119.99873 * 185.56795 * 13 3 2 16 16 N 1.31294 * 126.35923 * 354.83892 * 15 13 3 17 17 N 1.28686 * 109.17429 * 179.83226 * 16 15 13 18 18 C 1.30843 * 109.43938 * 0.44113 * 17 16 15 19 19 C 1.50705 * 126.17161 * 179.73576 * 18 17 16 20 20 C 1.53003 * 117.49678 * 8.74310 * 19 18 17 21 21 C 1.53003 * 117.49405 * 300.08238 * 19 18 17 22 22 O 1.33950 * 107.65812 * 359.73069 * 18 17 16 23 23 H 1.09002 * 109.46921 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46887 * 300.00022 * 1 2 3 25 25 H 1.09001 * 109.47466 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.47522 * 119.99595 * 2 1 3 27 27 H 1.08995 * 109.46985 * 240.00418 * 2 1 3 28 28 H 1.08995 * 109.46765 * 215.43701 * 4 3 2 29 29 H 1.09000 * 109.46934 * 335.43551 * 4 3 2 30 30 H 0.97001 * 119.99748 * 179.97438 * 8 7 5 31 31 H 1.08997 * 115.55011 * 154.41860 * 19 18 17 32 32 H 1.08994 * 117.50001 * 0.02562 * 20 19 18 33 33 H 1.08997 * 117.49443 * 145.02828 * 20 19 18 34 34 H 1.08995 * 117.49902 * 214.97630 * 21 19 18 35 35 H 1.09000 * 117.50060 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1588 2.1086 1.2639 5 6 3.5798 1.9961 1.7528 6 1 4.3058 1.4390 1.1792 7 6 3.9534 2.6054 2.9320 8 7 3.0695 3.2842 3.6302 9 14 5.7150 2.4667 3.5377 10 1 6.5059 1.6550 2.5781 11 1 6.3092 3.8232 3.6469 12 1 5.7302 1.8110 4.8701 13 6 2.3383 1.9829 -1.1629 14 8 2.1269 1.4173 -2.2183 15 6 2.9447 3.3271 -1.1551 16 7 3.1395 4.0870 -0.1024 17 7 3.6934 5.1880 -0.4726 18 6 3.8630 5.1755 -1.7699 19 6 4.4728 6.2771 -2.5979 20 6 5.1267 7.4421 -1.8521 21 6 3.7885 7.6453 -2.5673 22 8 3.3969 4.0067 -2.2293 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.9099 3.1583 1.1086 29 1 1.4844 1.6811 2.0059 30 1 3.3322 3.7125 4.4599 31 1 4.9271 5.9626 -3.5375 32 1 5.1162 7.4115 -0.7627 33 1 6.0109 7.8943 -2.3013 34 1 3.7930 8.2310 -3.4864 35 1 2.8970 7.7484 -1.9485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331964838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:18 Heat of formation + Delta-G solvation = 25.061424 kcal Electronic energy + Delta-G solvation = -20361.560941 eV Core-core repulsion = 17169.715141 eV Total energy + Delta-G solvation = -3191.845800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.32270 -40.93722 -38.35054 -37.68946 -36.86622 -34.70076 -33.02636 -31.34090 -29.08606 -26.82968 -25.70940 -24.98906 -23.98328 -23.32938 -22.30538 -21.07862 -18.96174 -18.59213 -18.40940 -18.13105 -17.53867 -16.56202 -16.43125 -16.03293 -15.68777 -15.25261 -14.54878 -14.38789 -13.93843 -13.67157 -13.62238 -13.49164 -13.16308 -12.88581 -12.73506 -12.68377 -12.44053 -12.25100 -12.18188 -11.93423 -11.75706 -11.69505 -11.53808 -11.47690 -10.59561 -10.45221 -9.71392 -8.13771 -6.22013 -0.47661 0.67842 0.95086 1.36239 1.39345 1.47649 1.83358 2.12116 2.41730 2.71631 2.84272 3.21067 3.26690 3.59359 3.78964 3.93427 3.96262 4.13135 4.21741 4.33115 4.50159 4.52182 4.73041 4.74359 4.86504 4.94669 5.02175 5.05779 5.21970 5.25319 5.38131 5.60544 5.74297 6.09873 6.17463 6.69098 6.85884 7.15159 7.44266 8.94606 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.008596 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.719950 B = 3256.637158 C = 4857.311995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.560 5.560 4 C 0.238 3.762 5 C -0.524 4.524 6 H 0.040 0.960 7 C 0.035 3.965 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.607 3.393 14 O -0.561 6.561 15 C 0.095 3.905 16 N -0.190 5.190 17 N -0.324 5.324 18 C 0.209 3.791 19 C -0.106 4.106 20 C -0.137 4.137 21 C -0.132 4.132 22 O -0.208 6.208 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 4.843 -10.822 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.290 5.290 4 C 0.118 3.882 5 C -0.562 4.562 6 H 0.059 0.941 7 C -0.166 4.166 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.391 3.609 14 O -0.441 6.441 15 C -0.117 4.117 16 N -0.042 5.042 17 N -0.174 5.174 18 C 0.001 3.999 19 C -0.126 4.126 20 C -0.174 4.174 21 C -0.170 4.170 22 O -0.085 6.085 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.529 4.972 -9.963 11.147 hybrid contribution 0.888 -0.541 -0.364 1.102 sum 1.417 4.430 -10.327 11.326 Atomic orbital electron populations 1.22056 0.93815 1.03815 1.01656 1.21769 0.95919 0.79719 1.03904 1.48151 1.59500 1.14978 1.06383 1.19631 0.96718 0.92973 0.78873 1.21294 0.95499 1.32850 1.06607 0.94141 1.25370 1.00174 0.94420 0.96650 1.69993 1.35193 1.34120 1.15556 0.85759 0.81326 0.77594 0.78450 1.20140 1.21095 1.19627 1.15990 0.79101 0.80794 0.85060 1.90748 1.57231 1.65002 1.31072 1.27291 1.04725 0.99173 0.80501 1.75502 1.08547 0.97479 1.22720 1.74710 1.16856 1.15843 1.09945 1.28293 0.94355 0.85884 0.91337 1.20695 1.07499 0.83711 1.00686 1.23303 0.98480 0.95380 1.00228 1.23340 0.96689 0.92408 1.04562 1.84725 1.59511 1.26773 1.37535 0.88326 0.92656 0.93487 0.88809 0.89838 0.93181 0.94683 0.92707 0.81508 0.89301 0.83479 0.83189 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.76 16 2 C 0.11 3.75 6.12 86.38 0.53 4.28 16 3 N -0.56 -24.64 2.47 -830.01 -2.05 -26.69 16 4 C 0.24 12.00 4.78 85.63 0.41 12.41 16 5 C -0.52 -28.63 8.05 25.60 0.21 -28.43 16 6 H 0.04 2.28 7.81 -2.91 -0.02 2.25 16 7 C 0.03 1.92 5.46 84.66 0.46 2.39 16 8 N -0.91 -52.40 13.29 21.45 0.28 -52.11 16 9 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.61 27.95 7.62 86.67 0.66 28.61 16 14 O -0.56 -26.18 16.66 -0.37 -0.01 -26.19 16 15 C 0.09 4.41 7.84 87.21 0.68 5.09 16 16 N -0.19 -9.41 7.92 -166.41 -1.32 -10.73 16 17 N -0.32 -14.25 11.85 -165.38 -1.96 -16.21 16 18 C 0.21 7.53 7.99 88.26 0.71 8.24 16 19 C -0.11 -2.36 6.33 -11.54 -0.07 -2.43 16 20 C -0.14 -2.47 10.15 30.62 0.31 -2.16 16 21 C -0.13 -2.18 10.24 30.62 0.31 -1.87 16 22 O -0.21 -8.55 10.87 -1.63 -0.02 -8.57 16 23 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.09 3.12 8.11 -2.39 -0.02 3.10 16 27 H 0.08 2.81 7.36 -2.39 -0.02 2.80 16 28 H 0.05 2.76 5.64 -2.39 -0.01 2.75 16 29 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.17 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.09 2.13 7.91 -2.39 -0.02 2.11 16 33 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -70.22 308.88 3.01 -67.22 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.10 Total: 4.34 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 4.94 Total: 22.36 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.04 Total: -105.74 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.02 Total: -34.76 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.22 3.01 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331964838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.280 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds