Wall clock time and date at job start Mon Mar 30 2020 00:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47015 * 2 1 4 4 C 1.50702 * 109.47134 * 240.00317 * 2 1 3 5 5 O 1.21292 * 119.99444 * 249.01536 * 4 2 1 6 6 N 1.34772 * 120.00169 * 69.01269 * 4 2 1 7 7 C 1.37095 * 120.00244 * 3.68789 * 6 4 2 8 8 H 1.08006 * 119.99419 * 14.00808 * 7 6 4 9 9 C 1.38948 * 120.00508 * 194.00231 * 7 6 4 10 10 N 1.31411 * 119.99681 * 11.44429 * 9 7 6 11 11 Si 1.86800 * 120.00142 * 191.44013 * 9 7 6 12 12 H 1.48497 * 109.47209 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46698 * 120.00162 * 11 9 7 14 14 H 1.48497 * 109.47333 * 239.99860 * 11 9 7 15 15 C 1.46503 * 119.99718 * 183.69710 * 6 4 2 16 16 C 1.47193 * 109.47291 * 83.75763 * 15 6 4 17 17 N 5.17191 * 77.24127 * 239.91462 * 2 1 3 18 18 C 1.53002 * 109.47169 * 119.99822 * 2 1 3 19 19 H 1.09000 * 110.21008 * 59.52671 * 18 2 1 20 20 C 1.54481 * 110.24514 * 297.50779 * 18 2 1 21 21 C 1.54632 * 101.75885 * 266.41419 * 20 18 2 22 22 C 1.51287 * 104.19552 * 335.19946 * 21 20 18 23 23 O 1.21280 * 124.93965 * 196.22916 * 22 21 20 24 24 N 1.34415 * 110.11473 * 16.25950 * 22 21 20 25 25 H 1.09002 * 109.47234 * 65.71928 * 1 2 3 26 26 H 1.09000 * 109.46984 * 185.71545 * 1 2 3 27 27 H 1.09000 * 109.47521 * 305.71165 * 1 2 3 28 28 H 0.96999 * 120.00016 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.46407 * 203.75793 * 15 6 4 30 30 H 1.08995 * 109.47025 * 323.74921 * 15 6 4 31 31 H 1.08997 * 110.96965 * 24.52934 * 20 18 2 32 32 H 1.09000 * 110.96691 * 148.30126 * 20 18 2 33 33 H 1.09003 * 110.47962 * 216.52831 * 21 20 18 34 34 H 1.08994 * 110.48545 * 93.88441 * 21 20 18 35 35 H 0.96998 * 124.34857 * 180.42355 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5891 -1.7829 -1.1267 6 7 1.8629 -0.1539 -2.4463 7 6 1.3018 1.0920 -2.5577 8 1 1.2037 1.7201 -1.6846 9 6 0.8595 1.5468 -3.7939 10 7 0.7685 0.7138 -4.8063 11 14 0.3940 3.3421 -4.0168 12 1 0.5845 4.0657 -2.7341 13 1 1.2566 3.9511 -5.0611 14 1 -1.0284 3.4368 -4.4326 15 6 2.2780 -0.8806 -3.6487 16 6 1.2112 -1.8107 -4.0528 17 7 0.3878 -2.5286 -4.3646 18 6 2.0400 -0.7212 1.2493 19 1 1.6765 -1.7487 1.2657 20 6 1.5871 0.0285 2.5217 21 6 2.8020 0.9447 2.7970 22 6 3.9624 0.2292 2.1409 23 8 5.1330 0.4614 2.3565 24 7 3.5070 -0.7010 1.2840 25 1 -0.3634 0.4226 -0.9368 26 1 -0.3633 -1.0226 0.1023 27 1 -0.3634 0.5998 0.8344 28 1 0.4601 1.0313 -5.6694 29 1 2.4664 -0.1714 -4.4548 30 1 3.1886 -1.4414 -3.4380 31 1 0.6903 0.6173 2.3291 32 1 1.4268 -0.6652 3.3470 33 1 2.9710 1.0420 3.8694 34 1 2.6518 1.9241 2.3430 35 1 4.0751 -1.2841 0.7566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334958258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:05 Heat of formation + Delta-G solvation = -38.389227 kcal Electronic energy + Delta-G solvation = -20690.315230 eV Core-core repulsion = 17495.718004 eV Total energy + Delta-G solvation = -3194.597226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42680 -38.85286 -36.57702 -35.52700 -34.56674 -32.61290 -31.65419 -31.00017 -27.79035 -26.37216 -25.15056 -23.63014 -20.82550 -20.19489 -19.28600 -17.96970 -17.31103 -16.46361 -16.19870 -15.58727 -15.03075 -14.53422 -14.44783 -13.95626 -13.57787 -13.32656 -13.15630 -12.87633 -12.67310 -12.59563 -12.05015 -11.85725 -11.49839 -11.46464 -11.38992 -11.26471 -11.13106 -11.02926 -10.71328 -10.57673 -10.45432 -10.28068 -9.60689 -9.45153 -8.80611 -8.63852 -8.23329 -6.60778 -4.21761 2.85465 2.95755 3.08649 3.11728 3.47687 3.70964 3.73162 3.96995 4.12835 4.43810 4.58998 4.76718 4.78775 4.93525 5.22321 5.35617 5.44031 5.59233 5.65602 5.76013 5.79424 5.86993 5.97165 6.13814 6.25449 6.44331 6.46492 6.74848 6.80770 7.14206 7.15227 7.36872 7.42823 8.07227 8.56159 8.78295 8.82797 9.14072 9.53734 10.38636 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.007066 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.492813 B = 3961.459361 C = 4614.557623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.092 0.908 4 C 0.469 3.531 5 O -0.601 6.601 6 N -0.439 5.439 7 C -0.331 4.331 8 H 0.108 0.892 9 C 0.035 3.965 10 N -0.876 5.876 11 Si 0.928 3.072 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.281 1.281 15 C 0.220 3.780 16 C 0.259 3.741 17 N -0.490 5.490 18 C 0.150 3.850 19 H 0.092 0.908 20 C -0.132 4.132 21 C -0.157 4.157 22 C 0.514 3.486 23 O -0.551 6.551 24 N -0.709 5.709 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.275 0.725 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 3.454 9.278 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.110 0.890 4 C 0.258 3.742 5 O -0.487 6.487 6 N -0.157 5.157 7 C -0.458 4.458 8 H 0.125 0.875 9 C -0.169 4.169 10 N -0.515 5.515 11 Si 0.755 3.245 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.207 1.207 15 C 0.093 3.907 16 C -0.059 4.059 17 N -0.170 5.170 18 C 0.044 3.956 19 H 0.110 0.890 20 C -0.170 4.170 21 C -0.197 4.197 22 C 0.300 3.700 23 O -0.430 6.430 24 N -0.363 5.363 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.929 2.085 8.810 9.101 hybrid contribution 0.023 1.048 -0.592 1.204 sum -0.906 3.132 8.218 8.841 Atomic orbital electron populations 1.21781 0.92721 1.01948 1.03694 1.21441 0.97670 1.00663 0.92721 0.89040 1.20081 0.83380 0.85829 0.84863 1.90534 1.48102 1.23355 1.86720 1.43617 1.53329 1.15731 1.03027 1.19795 1.38846 0.90610 0.96551 0.87468 1.25290 0.96026 1.00132 0.95481 1.69859 1.44403 1.34273 1.02927 0.85823 0.78294 0.81521 0.78883 1.19126 1.20331 1.20672 1.18917 0.89072 0.91822 0.90856 1.29406 0.94004 0.90885 0.91566 1.80877 1.10784 1.14664 1.10650 1.21492 0.79874 1.00613 0.93653 0.88987 1.22755 0.98379 0.98722 0.97128 1.22339 0.94281 1.00435 1.02652 1.20913 0.89548 0.79992 0.79520 1.90715 1.19017 1.67540 1.65705 1.46318 1.08316 1.38193 1.43474 0.89566 0.92910 0.92405 0.91408 0.83636 0.90050 0.88637 0.90064 0.88504 0.87882 0.74313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.61 37.16 0.32 -1.78 16 2 C -0.10 -1.64 1.65 -91.77 -0.15 -1.79 16 3 H 0.09 1.45 7.08 -51.93 -0.37 1.08 16 4 C 0.47 9.54 6.65 -10.99 -0.07 9.47 16 5 O -0.60 -13.29 14.65 5.55 0.08 -13.21 16 6 N -0.44 -9.45 2.61 -117.94 -0.31 -9.76 16 7 C -0.33 -7.08 7.72 -14.93 -0.12 -7.19 16 8 H 0.11 2.13 5.85 -52.48 -0.31 1.83 16 9 C 0.03 0.76 5.17 -17.47 -0.09 0.67 16 10 N -0.88 -20.35 8.92 55.50 0.49 -19.86 16 11 Si 0.93 17.46 29.57 -169.99 -5.03 12.44 16 12 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 13 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 15 C 0.22 4.70 5.09 -6.83 -0.03 4.67 16 16 C 0.26 6.10 14.04 -20.76 -0.29 5.80 16 17 N -0.49 -12.21 18.54 42.15 0.78 -11.43 16 18 C 0.15 2.07 2.54 -67.01 -0.17 1.90 16 19 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 20 C -0.13 -1.33 6.53 -25.10 -0.16 -1.49 16 21 C -0.16 -1.75 6.86 -26.74 -0.18 -1.94 16 22 C 0.51 8.09 8.43 -10.86 -0.09 7.99 16 23 O -0.55 -10.80 18.03 5.56 0.10 -10.70 16 24 N -0.71 -10.98 5.38 -52.76 -0.28 -11.26 16 25 H 0.09 1.48 6.29 -51.93 -0.33 1.16 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 28 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 29 H 0.15 3.14 5.78 -51.93 -0.30 2.84 16 30 H 0.08 1.62 7.57 -51.93 -0.39 1.22 16 31 H 0.10 0.82 6.05 -51.93 -0.31 0.50 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.42 6.98 8.15 -40.82 -0.33 6.64 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -28.63 294.40 -4.69 -33.31 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -3.92 Total: 9.71 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -1.05 Total: 16.32 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.69 Total: -52.31 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.63 -4.69 -33.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334958258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.076 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds