Wall clock time and date at job start Mon Mar 30 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47015 * 2 1 4 4 C 1.50702 * 109.47134 * 240.00317 * 2 1 3 5 5 O 1.21292 * 119.99444 * 249.01536 * 4 2 1 6 6 N 1.34772 * 120.00169 * 69.01269 * 4 2 1 7 7 C 1.37095 * 120.00244 * 3.68789 * 6 4 2 8 8 H 1.08006 * 119.99419 * 14.00808 * 7 6 4 9 9 C 1.38948 * 120.00508 * 194.00231 * 7 6 4 10 10 N 1.31411 * 119.99681 * 11.44429 * 9 7 6 11 11 Si 1.86800 * 120.00142 * 191.44013 * 9 7 6 12 12 H 1.48497 * 109.47209 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46698 * 120.00162 * 11 9 7 14 14 H 1.48497 * 109.47333 * 239.99860 * 11 9 7 15 15 C 1.46503 * 119.99718 * 183.69710 * 6 4 2 16 16 C 1.47193 * 109.47291 * 83.75763 * 15 6 4 17 17 N 5.17191 * 77.24127 * 239.91462 * 2 1 3 18 18 C 1.53002 * 109.47169 * 119.99822 * 2 1 3 19 19 H 1.09000 * 110.21008 * 59.52671 * 18 2 1 20 20 C 1.54481 * 110.24514 * 297.50779 * 18 2 1 21 21 C 1.54632 * 101.75885 * 266.41419 * 20 18 2 22 22 C 1.51287 * 104.19552 * 335.19946 * 21 20 18 23 23 O 1.21280 * 124.93965 * 196.22916 * 22 21 20 24 24 N 1.34415 * 110.11473 * 16.25950 * 22 21 20 25 25 H 1.09002 * 109.47234 * 65.71928 * 1 2 3 26 26 H 1.09000 * 109.46984 * 185.71545 * 1 2 3 27 27 H 1.09000 * 109.47521 * 305.71165 * 1 2 3 28 28 H 0.96999 * 120.00016 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.46407 * 203.75793 * 15 6 4 30 30 H 1.08995 * 109.47025 * 323.74921 * 15 6 4 31 31 H 1.08997 * 110.96965 * 24.52934 * 20 18 2 32 32 H 1.09000 * 110.96691 * 148.30126 * 20 18 2 33 33 H 1.09003 * 110.47962 * 216.52831 * 21 20 18 34 34 H 1.08994 * 110.48545 * 93.88441 * 21 20 18 35 35 H 0.96998 * 124.34857 * 180.42355 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5891 -1.7829 -1.1267 6 7 1.8629 -0.1539 -2.4463 7 6 1.3018 1.0920 -2.5577 8 1 1.2037 1.7201 -1.6846 9 6 0.8595 1.5468 -3.7939 10 7 0.7685 0.7138 -4.8063 11 14 0.3940 3.3421 -4.0168 12 1 0.5845 4.0657 -2.7341 13 1 1.2566 3.9511 -5.0611 14 1 -1.0284 3.4368 -4.4326 15 6 2.2780 -0.8806 -3.6487 16 6 1.2112 -1.8107 -4.0528 17 7 0.3878 -2.5286 -4.3646 18 6 2.0400 -0.7212 1.2493 19 1 1.6765 -1.7487 1.2657 20 6 1.5871 0.0285 2.5217 21 6 2.8020 0.9447 2.7970 22 6 3.9624 0.2292 2.1409 23 8 5.1330 0.4614 2.3565 24 7 3.5070 -0.7010 1.2840 25 1 -0.3634 0.4226 -0.9368 26 1 -0.3633 -1.0226 0.1023 27 1 -0.3634 0.5998 0.8344 28 1 0.4601 1.0313 -5.6694 29 1 2.4664 -0.1714 -4.4548 30 1 3.1886 -1.4414 -3.4380 31 1 0.6903 0.6173 2.3291 32 1 1.4268 -0.6652 3.3470 33 1 2.9710 1.0420 3.8694 34 1 2.6518 1.9241 2.3430 35 1 4.0751 -1.2841 0.7566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334958258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:04 Heat of formation + Delta-G solvation = -57.649566 kcal Electronic energy + Delta-G solvation = -20691.150421 eV Core-core repulsion = 17495.718004 eV Total energy + Delta-G solvation = -3195.432417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67007 -40.36406 -37.97759 -37.19052 -36.36971 -33.96252 -33.29040 -31.98813 -29.43355 -27.49735 -26.76595 -24.86195 -22.04070 -21.30542 -20.81274 -19.55687 -18.58344 -18.04427 -17.79388 -16.82190 -16.34874 -16.09714 -15.92425 -15.43737 -14.90873 -14.76020 -14.53658 -14.19598 -14.02524 -13.74232 -13.60305 -13.44353 -13.09154 -12.97918 -12.75870 -12.61320 -12.39746 -12.28420 -12.11345 -12.00185 -11.90309 -11.57689 -11.13303 -10.83002 -10.30843 -9.97792 -9.94347 -8.27375 -5.92030 1.45121 1.56463 1.66071 1.66811 1.80455 2.04578 2.24803 2.37038 2.56849 3.03799 3.12238 3.55605 3.64933 3.75127 3.89139 4.23452 4.25273 4.42463 4.54259 4.59826 4.73082 4.84766 4.94759 5.00423 5.08975 5.19854 5.24230 5.31154 5.48911 5.57265 5.72479 5.93775 6.23988 6.39093 6.94583 7.11643 7.32523 7.50142 7.89463 8.72219 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.007066 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.492813 B = 3961.459361 C = 4614.557623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.099 0.901 4 C 0.459 3.541 5 O -0.623 6.623 6 N -0.452 5.452 7 C -0.331 4.331 8 H 0.125 0.875 9 C -0.006 4.006 10 N -0.906 5.906 11 Si 0.988 3.012 12 H -0.249 1.249 13 H -0.284 1.284 14 H -0.292 1.292 15 C 0.220 3.780 16 C 0.268 3.732 17 N -0.521 5.521 18 C 0.148 3.852 19 H 0.085 0.915 20 C -0.116 4.116 21 C -0.147 4.147 22 C 0.503 3.497 23 O -0.599 6.599 24 N -0.715 5.715 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.103 0.897 28 H 0.270 0.730 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 5.103 11.473 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.117 0.883 4 C 0.250 3.750 5 O -0.511 6.511 6 N -0.171 5.171 7 C -0.458 4.458 8 H 0.142 0.858 9 C -0.206 4.206 10 N -0.547 5.547 11 Si 0.813 3.187 12 H -0.172 1.172 13 H -0.210 1.210 14 H -0.219 1.219 15 C 0.093 3.907 16 C -0.049 4.049 17 N -0.202 5.202 18 C 0.042 3.958 19 H 0.103 0.897 20 C -0.153 4.153 21 C -0.187 4.187 22 C 0.292 3.708 23 O -0.482 6.482 24 N -0.366 5.366 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.162 0.838 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.038 3.738 11.032 11.825 hybrid contribution 0.404 0.444 -1.283 1.416 sum -1.634 4.182 9.749 10.734 Atomic orbital electron populations 1.21757 0.91303 1.02305 1.04146 1.21493 0.98616 1.00520 0.91244 0.88329 1.21021 0.82360 0.85798 0.85804 1.90518 1.48778 1.24549 1.87213 1.43865 1.53816 1.16114 1.03318 1.20161 1.37991 0.90566 0.97077 0.85772 1.25995 0.96191 1.03127 0.95290 1.69963 1.45917 1.35644 1.03161 0.84906 0.76857 0.77785 0.79132 1.17243 1.21034 1.21898 1.18986 0.88767 0.91596 0.91323 1.29882 0.93826 0.90439 0.90718 1.80857 1.11827 1.15752 1.11716 1.21623 0.78783 1.00734 0.94669 0.89696 1.22815 0.98552 0.98600 0.95373 1.22397 0.92157 1.00517 1.03594 1.21784 0.90075 0.79781 0.79177 1.90682 1.21390 1.68911 1.67194 1.46530 1.09146 1.37870 1.43065 0.92258 0.93489 0.87886 0.91945 0.83805 0.88958 0.86020 0.87831 0.86276 0.86370 0.75782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.61 71.98 0.62 -2.96 16 2 C -0.10 -2.84 1.65 -11.54 -0.02 -2.86 16 3 H 0.10 2.79 7.08 -2.39 -0.02 2.77 16 4 C 0.46 18.35 6.65 87.66 0.58 18.93 16 5 O -0.62 -27.58 14.65 -3.07 -0.04 -27.63 16 6 N -0.45 -19.32 2.61 -645.42 -1.68 -21.00 16 7 C -0.33 -13.76 7.72 84.04 0.65 -13.11 16 8 H 0.12 4.63 5.85 -2.91 -0.02 4.61 16 9 C -0.01 -0.24 5.17 84.93 0.44 0.19 16 10 N -0.91 -42.42 8.92 21.66 0.19 -42.23 16 11 Si 0.99 34.92 29.57 68.60 2.03 36.94 16 12 H -0.25 -8.01 7.11 99.48 0.71 -7.30 16 13 H -0.28 -10.27 7.11 99.48 0.71 -9.57 16 14 H -0.29 -10.82 7.11 99.48 0.71 -10.11 16 15 C 0.22 9.51 5.09 84.57 0.43 9.94 16 16 C 0.27 12.81 14.04 89.44 1.26 14.07 16 17 N -0.52 -26.35 18.54 20.00 0.37 -25.98 16 18 C 0.15 3.69 2.54 45.45 0.12 3.81 16 19 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 20 C -0.12 -1.77 6.53 31.65 0.21 -1.56 16 21 C -0.15 -2.68 6.86 30.59 0.21 -2.47 16 22 C 0.50 15.03 8.43 87.90 0.74 15.77 16 23 O -0.60 -23.32 18.03 -3.03 -0.05 -23.38 16 24 N -0.72 -21.35 5.38 -439.44 -2.37 -23.72 16 25 H 0.06 1.90 6.29 -2.39 -0.01 1.89 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.74 6.44 -2.39 -0.02 1.73 16 28 H 0.27 12.41 8.31 -92.71 -0.77 11.64 16 29 H 0.14 6.32 5.78 -2.39 -0.01 6.31 16 30 H 0.09 3.73 7.57 -2.39 -0.02 3.71 16 31 H 0.12 1.28 6.05 -2.39 -0.01 1.27 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.40 13.67 8.15 -92.71 -0.76 12.91 16 Total: -1.00 -63.21 294.40 4.06 -59.14 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.39 Total: 28.10 kcal Atomic # 6 Polarization: 34.51 SS G_CDS: 5.23 Total: 39.74 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -3.48 Total: -112.92 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.10 Total: -51.01 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.94 kcal Total: -63.21 4.06 -59.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334958258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.493 kcal (2) G-P(sol) polarization free energy of solvation -63.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds