Wall clock time and date at job start Mon Mar 30 2020 00:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46765 * 2 1 4 4 C 1.50697 * 109.46739 * 240.00241 * 2 1 3 5 5 H 1.08002 * 120.00123 * 275.10458 * 4 2 1 6 6 C 1.37880 * 119.99938 * 95.10408 * 4 2 1 7 7 N 1.31517 * 119.99658 * 184.91128 * 6 4 2 8 8 Si 1.86797 * 120.00175 * 4.90463 * 6 4 2 9 9 H 1.48502 * 109.46816 * 84.82788 * 8 6 4 10 10 H 1.48500 * 109.47296 * 204.82483 * 8 6 4 11 11 H 1.48497 * 109.47213 * 324.82923 * 8 6 4 12 12 C 1.50699 * 109.47366 * 120.00050 * 2 1 3 13 13 O 1.20823 * 119.99727 * 119.99494 * 12 2 1 14 14 O 1.34227 * 119.99780 * 300.00133 * 12 2 1 15 15 C 1.45200 * 116.99634 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.47041 * 179.97438 * 15 14 12 17 17 N 1.46495 * 109.47401 * 64.99895 * 16 15 14 18 18 C 1.38529 * 120.00356 * 179.97438 * 17 16 15 19 19 C 1.39673 * 120.53259 * 0.02562 * 18 17 16 20 20 C 1.38069 * 118.33912 * 180.02562 * 19 18 17 21 21 N 1.32585 * 119.19534 * 359.97438 * 20 19 18 22 22 C 1.31756 * 121.01531 * 0.02562 * 21 20 19 23 23 N 1.31781 * 121.83149 * 359.71149 * 22 21 20 24 24 H 1.09005 * 109.46945 * 295.06196 * 1 2 3 25 25 H 1.08996 * 109.47792 * 55.05596 * 1 2 3 26 26 H 1.09000 * 109.47594 * 175.06249 * 1 2 3 27 27 H 0.97003 * 119.99707 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47136 * 299.99581 * 15 14 12 29 29 H 1.08998 * 109.47182 * 59.99583 * 15 14 12 30 30 H 1.09002 * 109.46889 * 184.99955 * 16 15 14 31 31 H 1.09000 * 109.46999 * 304.99774 * 16 15 14 32 32 H 0.97008 * 119.99393 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.82546 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.40484 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.08187 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2297 6 6 2.3621 0.0124 -2.3574 7 7 2.7078 -0.6127 -3.4616 8 14 2.3179 1.8794 -2.3157 9 1 3.6037 2.3931 -1.7789 10 1 2.1123 2.4005 -3.6910 11 1 1.2028 2.3288 -1.4441 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2518 2.4495 15 6 2.2278 -0.9857 3.5895 16 6 1.7567 -0.3185 4.8834 17 7 0.2992 -0.4255 4.9854 18 6 -0.3596 0.1093 6.0803 19 6 0.3546 0.7533 7.0933 20 6 -0.3478 1.2692 8.1642 21 7 -1.6668 1.1382 8.1961 22 6 -2.3118 0.5251 7.2245 23 7 -1.6825 0.0223 6.1814 24 1 -0.3633 0.4353 0.9310 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3634 -1.0238 -0.0884 27 1 2.9396 -0.1042 -4.2545 28 1 1.8644 -2.0128 3.5568 29 1 3.3173 -0.9846 3.5564 30 1 2.2181 -0.8151 5.7370 31 1 2.0443 0.7328 4.8756 32 1 -0.2044 -0.8714 4.2864 33 1 1.4293 0.8453 7.0401 34 1 0.1708 1.7740 8.9658 35 1 -3.3866 0.4365 7.2821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343756010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:51 Heat of formation + Delta-G solvation = -61.905272 kcal Electronic energy + Delta-G solvation = -19222.319036 eV Core-core repulsion = 16026.702078 eV Total energy + Delta-G solvation = -3195.616959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75855 -41.37069 -38.23247 -36.92254 -35.81686 -34.15100 -33.46932 -32.31932 -29.97838 -27.32614 -25.85675 -25.08637 -24.29384 -22.98768 -21.49690 -19.31579 -19.22186 -18.50366 -18.18009 -17.53256 -17.18423 -16.24167 -16.19217 -16.04913 -15.69027 -15.57031 -15.03332 -14.58119 -14.51651 -14.24058 -13.92994 -13.75682 -13.26365 -12.99575 -12.80694 -12.65181 -12.26678 -12.13596 -11.80943 -11.71362 -11.54891 -11.33282 -11.06677 -10.87878 -10.79737 -10.13542 -9.13854 -8.34715 -6.44194 0.18792 0.46189 1.33160 1.36370 1.42114 1.49188 1.78007 2.00220 2.30638 3.01819 3.03053 3.47118 3.53825 3.67805 3.82562 4.03245 4.06031 4.31600 4.34997 4.40479 4.53916 4.63038 4.65907 4.69368 4.80680 4.84367 5.06250 5.32177 5.36948 5.46794 5.50446 5.78232 6.18159 6.25701 6.52969 6.65151 7.00834 7.20583 7.37111 8.82186 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.033271 B = 0.003724 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.380054 B = 7516.547117 C = 7799.593521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.018 3.982 3 H 0.080 0.920 4 C -0.519 4.519 5 H 0.031 0.969 6 C 0.016 3.984 7 N -0.942 5.942 8 Si 0.941 3.059 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.228 1.228 12 C 0.472 3.528 13 O -0.538 6.538 14 O -0.358 6.358 15 C 0.042 3.958 16 C 0.137 3.863 17 N -0.710 5.710 18 C 0.421 3.579 19 C -0.294 4.294 20 C 0.169 3.831 21 N -0.587 5.587 22 C 0.327 3.673 23 N -0.609 5.609 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.406 0.594 33 H 0.168 0.832 34 H 0.195 0.805 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 6.614 23.164 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.002 4.002 3 H 0.098 0.902 4 C -0.557 4.557 5 H 0.049 0.951 6 C -0.182 4.182 7 N -0.581 5.581 8 Si 0.763 3.237 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.151 1.151 12 C 0.316 3.684 13 O -0.427 6.427 14 O -0.276 6.276 15 C -0.032 4.032 16 C 0.014 3.986 17 N -0.342 5.342 18 C 0.177 3.823 19 C -0.322 4.322 20 C 0.008 3.992 21 N -0.306 5.306 22 C 0.038 3.962 23 N -0.334 5.334 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.242 0.758 33 H 0.185 0.815 34 H 0.212 0.788 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.942 6.265 23.019 24.363 hybrid contribution 1.035 -0.173 -1.106 1.524 sum -3.907 6.093 21.913 23.077 Atomic orbital electron populations 1.21814 0.93275 1.01491 1.01900 1.19136 0.96643 0.97088 0.87300 0.90246 1.20837 1.44777 0.94100 0.95960 0.95066 1.25992 0.93418 1.04501 0.94329 1.70039 1.46698 1.38576 1.02773 0.85836 0.80737 0.78528 0.78641 1.18901 1.20659 1.15122 1.24720 0.76299 0.82682 0.84696 1.90550 1.37037 1.27726 1.87383 1.86584 1.70151 1.55851 1.14968 1.23456 1.00701 0.95966 0.83097 1.21699 0.78599 1.03021 0.95258 1.44654 1.07269 1.60636 1.21641 1.18867 0.88713 0.87522 0.87237 1.22446 1.03685 1.08531 0.97500 1.23458 0.89392 0.90496 0.95834 1.68475 1.11010 1.21189 1.29957 1.25116 1.01624 0.86558 0.82914 1.67975 1.08987 1.27526 1.28903 0.91117 0.91963 0.93820 0.92002 0.91084 0.88664 0.86230 0.89040 0.75809 0.81497 0.78780 0.77050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.14 71.98 0.66 -4.21 16 2 C 0.02 0.80 2.40 -12.29 -0.03 0.78 16 3 H 0.08 3.34 5.29 -2.39 -0.01 3.33 16 4 C -0.52 -29.74 8.36 25.60 0.21 -29.53 16 5 H 0.03 2.08 7.62 -2.91 -0.02 2.06 16 6 C 0.02 0.90 5.47 84.65 0.46 1.36 16 7 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 8 Si 0.94 41.08 26.99 68.60 1.85 42.93 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.23 -8.71 6.82 99.48 0.68 -8.04 16 12 C 0.47 19.95 7.25 71.24 0.52 20.47 16 13 O -0.54 -26.62 15.52 21.97 0.34 -26.28 16 14 O -0.36 -11.37 9.98 -51.39 -0.51 -11.88 16 15 C 0.04 0.95 5.60 71.98 0.40 1.36 16 16 C 0.14 2.07 5.32 86.38 0.46 2.53 16 17 N -0.71 -14.03 5.66 -344.59 -1.95 -15.99 16 18 C 0.42 8.85 7.71 133.19 1.03 9.88 16 19 C -0.29 -4.59 9.40 22.58 0.21 -4.38 16 20 C 0.17 2.60 11.29 84.54 0.95 3.56 16 21 N -0.59 -11.69 10.43 -200.33 -2.09 -13.78 16 22 C 0.33 6.63 12.28 180.90 2.22 8.85 16 23 N -0.61 -14.43 10.47 -197.61 -2.07 -16.50 16 24 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 28 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.10 2.06 8.13 -2.39 -0.02 2.04 16 30 H 0.12 1.07 7.97 -2.39 -0.02 1.05 16 31 H 0.09 1.22 7.97 -2.39 -0.02 1.20 16 32 H 0.41 9.10 8.60 -92.70 -0.80 8.30 16 33 H 0.17 1.58 6.87 -2.91 -0.02 1.56 16 34 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -75.31 307.55 3.26 -72.05 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.29 Total: 16.77 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 7.10 Total: 10.66 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.81 Total: -104.25 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.17 Total: -38.16 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.85 Total: 42.93 kcal Total: -75.31 3.26 -72.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343756010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.149 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds