Wall clock time and date at job start Mon Mar 30 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47575 * 2 1 4 4 C 1.50707 * 109.47434 * 239.99529 * 2 1 3 5 5 H 1.07990 * 120.00196 * 240.00456 * 4 2 1 6 6 C 1.37876 * 119.99343 * 60.00100 * 4 2 1 7 7 N 1.31510 * 120.00429 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99501 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47489 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46722 * 120.00345 * 8 6 4 11 11 H 1.48504 * 109.47264 * 239.99916 * 8 6 4 12 12 C 1.50707 * 109.47185 * 120.00027 * 2 1 3 13 13 O 1.21279 * 120.00346 * 119.99628 * 12 2 1 14 14 N 1.34775 * 119.99634 * 300.00068 * 12 2 1 15 15 C 1.46498 * 120.00163 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47463 * 179.97438 * 15 14 12 17 17 N 1.30275 * 126.28506 * 89.99666 * 16 15 14 18 18 N 1.28664 * 109.38152 * 179.73391 * 17 16 15 19 19 C 1.30270 * 109.38100 * 0.44292 * 18 17 16 20 20 C 1.50706 * 126.28141 * 179.82649 * 19 18 17 21 21 C 1.53002 * 117.49668 * 59.69285 * 20 19 18 22 22 C 1.53000 * 60.02940 * 252.51929 * 21 20 19 23 23 O 1.34358 * 126.28173 * 269.99833 * 16 15 14 24 24 H 1.09000 * 109.46687 * 59.99940 * 1 2 3 25 25 H 1.08993 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47020 * 300.00736 * 1 2 3 27 27 H 0.97001 * 120.00124 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00293 * 359.97438 * 14 12 2 29 29 H 1.09000 * 109.47554 * 59.99579 * 15 14 12 30 30 H 1.09001 * 109.46994 * 299.99697 * 15 14 12 31 31 H 1.09000 * 115.55924 * 205.37690 * 20 19 18 32 32 H 1.09002 * 117.49918 * 145.01964 * 21 20 19 33 33 H 1.09002 * 117.49754 * 0.02562 * 21 20 19 34 34 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 35 35 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6935 -0.2294 4.8812 17 7 0.5793 -0.4721 5.5111 18 7 0.4774 0.3207 6.5194 19 6 1.5185 1.1025 6.5615 20 6 1.7860 2.1772 7.5836 21 6 1.8795 1.7501 9.0498 22 6 0.6560 2.5246 8.5560 23 8 2.3130 0.7709 5.5299 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7096 1.1617 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 3.2855 -0.9398 3.6507 30 1 1.8325 -1.9679 3.6510 31 1 2.4338 2.9893 7.2537 32 1 2.5889 2.2812 9.6845 33 1 1.7481 0.6917 9.2751 34 1 -0.2805 1.9757 8.4560 35 1 0.5602 3.5652 8.8661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347751075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:38 Heat of formation + Delta-G solvation = 25.709380 kcal Electronic energy + Delta-G solvation = -19202.431751 eV Core-core repulsion = 16010.614049 eV Total energy + Delta-G solvation = -3191.817702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.42610 -38.96560 -37.83553 -36.33009 -34.73980 -33.78696 -31.47950 -30.33320 -27.28454 -25.16667 -25.08554 -23.11581 -22.83160 -22.03430 -21.54367 -19.65004 -17.80302 -17.42794 -16.78295 -16.25423 -15.92475 -15.37645 -15.13415 -14.64520 -14.52957 -13.78756 -13.23769 -12.96942 -12.84582 -12.59761 -12.35194 -12.11989 -11.94441 -11.63549 -11.53809 -11.23086 -11.04842 -11.03945 -10.75485 -10.69350 -10.29139 -9.99798 -9.68663 -9.00116 -8.75706 -8.71108 -8.37730 -6.05653 -4.09282 0.83415 1.91601 2.09901 3.27327 3.31578 3.39167 3.43204 3.48142 3.56876 3.83464 4.09469 4.26310 4.35037 4.43384 4.45877 4.94276 5.10609 5.14166 5.24852 5.27819 5.34780 5.50092 5.52440 5.55599 5.65385 6.10687 6.59392 6.71313 6.80334 6.90106 7.42712 7.71646 7.90208 8.05948 8.10690 8.31991 8.99539 9.05652 9.56465 11.02016 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.047773 B = 0.003392 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.963349 B = 8252.639112 C = 8456.913302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.076 0.924 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.539 6.539 14 N -0.745 5.745 15 C 0.218 3.782 16 C 0.157 3.843 17 N -0.267 5.267 18 N -0.287 5.287 19 C 0.194 3.806 20 C -0.085 4.085 21 C -0.152 4.152 22 C -0.144 4.144 23 O -0.216 6.216 24 H 0.094 0.906 25 H 0.033 0.967 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.400 0.600 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 5.171 20.819 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.540 4.540 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.316 3.684 13 O -0.414 6.414 14 N -0.402 5.402 15 C 0.093 3.907 16 C -0.054 4.054 17 N -0.114 5.114 18 N -0.134 5.134 19 C -0.016 4.016 20 C -0.105 4.105 21 C -0.190 4.190 22 C -0.181 4.181 23 O -0.094 6.094 24 H 0.113 0.887 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.235 0.765 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.338 3.983 20.869 21.248 hybrid contribution 1.127 0.557 -1.090 1.664 sum 1.464 4.540 19.779 20.346 Atomic orbital electron populations 1.21760 0.96300 1.00072 1.01044 1.18908 0.94310 0.96895 0.88802 0.92775 1.21177 1.31104 1.12900 0.88861 0.90589 1.24956 0.95061 0.95056 0.99176 1.69878 1.37064 1.23065 1.23532 0.86381 0.78633 0.79767 0.82385 1.19508 1.21018 1.21048 1.22128 0.78215 0.84276 0.83743 1.90556 1.37747 1.26655 1.86393 1.46379 1.56206 1.33138 1.04519 1.19544 1.00190 0.94807 0.76145 1.28107 0.89995 0.88862 0.98485 1.74474 1.15455 1.19092 1.02397 1.74373 1.20181 1.04623 1.14225 1.26859 0.86699 0.98585 0.89430 1.20161 1.07151 0.96015 0.87179 1.23182 1.01190 1.02296 0.92363 1.23176 0.93962 1.02291 0.98672 1.84792 1.46401 1.43561 1.34645 0.88709 0.94745 0.96912 0.92950 0.76528 0.88584 0.87020 0.84309 0.87006 0.87840 0.86884 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.54 16 3 H 0.05 1.37 8.14 -51.92 -0.42 0.94 16 4 C -0.50 -14.06 8.37 -34.44 -0.29 -14.35 16 5 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.53 11.65 7.15 -10.98 -0.08 11.57 16 13 O -0.54 -13.47 15.46 5.56 0.09 -13.38 16 14 N -0.74 -12.86 5.44 -61.47 -0.33 -13.19 16 15 C 0.22 3.20 6.30 -5.20 -0.03 3.16 16 16 C 0.16 2.25 7.85 -12.94 -0.10 2.14 16 17 N -0.27 -4.19 12.22 32.55 0.40 -3.79 16 18 N -0.29 -4.14 11.84 32.55 0.39 -3.75 16 19 C 0.19 2.37 8.00 -12.94 -0.10 2.26 16 20 C -0.09 -0.66 6.33 -91.73 -0.58 -1.24 16 21 C -0.15 -0.88 10.23 -26.73 -0.27 -1.16 16 22 C -0.14 -0.88 10.15 -26.70 -0.27 -1.15 16 23 O -0.22 -2.89 10.87 5.40 0.06 -2.84 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.01 0.24 7.56 -51.93 -0.39 -0.16 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.40 6.35 7.88 -40.82 -0.32 6.03 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.85 7.92 -51.92 -0.41 0.43 16 35 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -32.22 308.83 -5.20 -37.42 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.31 Total: 2.09 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.74 Total: 0.55 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 1.08 Total: -45.11 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.14 Total: -16.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.22 -5.20 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347751075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.133 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds