Wall clock time and date at job start Mon Mar 30 2020 00:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47575 * 2 1 4 4 C 1.50707 * 109.47434 * 239.99529 * 2 1 3 5 5 H 1.07990 * 120.00196 * 240.00456 * 4 2 1 6 6 C 1.37876 * 119.99343 * 60.00100 * 4 2 1 7 7 N 1.31510 * 120.00429 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99501 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47489 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46722 * 120.00345 * 8 6 4 11 11 H 1.48504 * 109.47264 * 239.99916 * 8 6 4 12 12 C 1.50707 * 109.47185 * 120.00027 * 2 1 3 13 13 O 1.21279 * 120.00346 * 119.99628 * 12 2 1 14 14 N 1.34775 * 119.99634 * 300.00068 * 12 2 1 15 15 C 1.46498 * 120.00163 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47463 * 179.97438 * 15 14 12 17 17 N 1.30275 * 126.28506 * 89.99666 * 16 15 14 18 18 N 1.28664 * 109.38152 * 179.73391 * 17 16 15 19 19 C 1.30270 * 109.38100 * 0.44292 * 18 17 16 20 20 C 1.50706 * 126.28141 * 179.82649 * 19 18 17 21 21 C 1.53002 * 117.49668 * 59.69285 * 20 19 18 22 22 C 1.53000 * 60.02940 * 252.51929 * 21 20 19 23 23 O 1.34358 * 126.28173 * 269.99833 * 16 15 14 24 24 H 1.09000 * 109.46687 * 59.99940 * 1 2 3 25 25 H 1.08993 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47020 * 300.00736 * 1 2 3 27 27 H 0.97001 * 120.00124 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00293 * 359.97438 * 14 12 2 29 29 H 1.09000 * 109.47554 * 59.99579 * 15 14 12 30 30 H 1.09001 * 109.46994 * 299.99697 * 15 14 12 31 31 H 1.09000 * 115.55924 * 205.37690 * 20 19 18 32 32 H 1.09002 * 117.49918 * 145.01964 * 21 20 19 33 33 H 1.09002 * 117.49754 * 0.02562 * 21 20 19 34 34 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 35 35 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6935 -0.2294 4.8812 17 7 0.5793 -0.4721 5.5111 18 7 0.4774 0.3207 6.5194 19 6 1.5185 1.1025 6.5615 20 6 1.7860 2.1772 7.5836 21 6 1.8795 1.7501 9.0498 22 6 0.6560 2.5246 8.5560 23 8 2.3130 0.7709 5.5299 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7096 1.1617 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 3.2855 -0.9398 3.6507 30 1 1.8325 -1.9679 3.6510 31 1 2.4338 2.9893 7.2537 32 1 2.5889 2.2812 9.6845 33 1 1.7481 0.6917 9.2751 34 1 -0.2805 1.9757 8.4560 35 1 0.5602 3.5652 8.8661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347751075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:37 Heat of formation + Delta-G solvation = 0.023039 kcal Electronic energy + Delta-G solvation = -19203.545594 eV Core-core repulsion = 16010.614049 eV Total energy + Delta-G solvation = -3192.931546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.48388 -40.68267 -38.41252 -37.39842 -36.23617 -35.78156 -33.00142 -31.97356 -28.55175 -27.19905 -26.01160 -24.60135 -23.53371 -23.26030 -22.33967 -21.33825 -18.90029 -18.55207 -18.35291 -17.98454 -17.00224 -16.84536 -16.47754 -16.18148 -15.73091 -15.16921 -14.69319 -14.66955 -14.14777 -13.68567 -13.64246 -13.41650 -13.13005 -12.97948 -12.70103 -12.61077 -12.46101 -12.35996 -12.22999 -12.13341 -12.02478 -11.59711 -11.04692 -10.80489 -10.54070 -10.30894 -10.25497 -8.15457 -6.26083 -0.19878 0.91757 1.04079 1.41053 1.43506 1.56665 1.80714 2.24201 2.46446 2.58058 2.74361 3.14719 3.22008 3.52343 3.77248 3.92589 3.92698 4.06481 4.23633 4.37482 4.46172 4.49823 4.72848 4.74132 4.87406 4.91679 4.99209 5.05182 5.20224 5.23322 5.47142 5.73450 5.90256 6.16711 6.52828 6.83365 7.04122 7.31331 7.44320 8.90760 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.047773 B = 0.003392 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.963349 B = 8252.639112 C = 8456.913302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.026 3.974 3 H 0.045 0.955 4 C -0.528 4.528 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.533 3.467 13 O -0.572 6.572 14 N -0.727 5.727 15 C 0.223 3.777 16 C 0.155 3.845 17 N -0.288 5.288 18 N -0.316 5.316 19 C 0.208 3.792 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.137 4.137 23 O -0.219 6.219 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 6.277 22.234 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.005 3.995 3 H 0.063 0.937 4 C -0.566 4.566 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.450 6.450 14 N -0.383 5.383 15 C 0.099 3.901 16 C -0.057 4.057 17 N -0.135 5.135 18 N -0.162 5.162 19 C -0.002 4.002 20 C -0.126 4.126 21 C -0.176 4.176 22 C -0.174 4.174 23 O -0.098 6.098 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.180 0.820 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.621 5.118 22.327 22.915 hybrid contribution 1.014 0.286 -1.393 1.747 sum 1.635 5.403 20.934 21.682 Atomic orbital electron populations 1.21579 0.95171 0.99657 1.01567 1.18829 0.95220 0.96185 0.89286 0.93701 1.21326 1.31623 1.12827 0.90858 0.92827 1.25611 0.95158 0.95725 1.01531 1.69957 1.37266 1.23633 1.24307 0.85516 0.78296 0.78619 0.79299 1.20170 1.20132 1.20048 1.21528 0.77985 0.83681 0.84581 1.90539 1.39364 1.28034 1.87085 1.46005 1.55210 1.32959 1.04149 1.19573 1.00897 0.94629 0.75037 1.27796 0.89968 0.89427 0.98544 1.74413 1.16111 1.19901 1.03089 1.74340 1.21567 1.05740 1.14554 1.27817 0.85416 0.98016 0.88902 1.20638 1.09155 0.95726 0.87101 1.23308 1.01480 1.02014 0.90759 1.23288 0.92973 1.03748 0.97383 1.84805 1.46569 1.43329 1.35074 0.90946 0.95502 0.93525 0.92596 0.75505 0.87237 0.86646 0.82000 0.84007 0.89103 0.88663 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.87 71.98 0.64 -4.92 16 2 C 0.03 1.29 2.64 -12.28 -0.03 1.25 16 3 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.53 -30.07 8.37 25.60 0.21 -29.86 16 5 H 0.05 3.24 6.75 -2.92 -0.02 3.22 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.91 11.32 21.45 0.24 -50.67 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.53 23.58 7.15 87.66 0.63 24.21 16 13 O -0.57 -28.90 15.46 -3.02 -0.05 -28.95 16 14 N -0.73 -24.49 5.44 -466.79 -2.54 -27.03 16 15 C 0.22 6.33 6.30 85.63 0.54 6.87 16 16 C 0.15 4.29 7.85 88.34 0.69 4.99 16 17 N -0.29 -8.90 12.22 -165.51 -2.02 -10.92 16 18 N -0.32 -8.92 11.84 -165.50 -1.96 -10.88 16 19 C 0.21 4.79 8.00 88.34 0.71 5.50 16 20 C -0.11 -1.39 6.33 -11.51 -0.07 -1.46 16 21 C -0.14 -1.21 10.23 30.60 0.31 -0.89 16 22 C -0.14 -1.32 10.15 30.62 0.31 -1.00 16 23 O -0.22 -5.59 10.87 -3.60 -0.04 -5.63 16 24 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.41 12.45 7.88 -92.71 -0.73 11.72 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.30 7.92 -2.38 -0.02 1.28 16 35 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -69.77 308.83 0.44 -69.33 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.39 Total: 12.08 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.39 Total: 6.16 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -6.28 Total: -99.50 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.09 Total: -34.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.77 0.44 -69.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347751075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.350 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds