Wall clock time and date at job start Mon Mar 30 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38244 * 119.97308 * 269.72762 * 17 16 14 19 19 C 1.38209 * 120.02398 * 179.72425 * 18 17 16 20 20 C 1.38455 * 119.97031 * 0.56684 * 19 18 17 21 21 F 1.35104 * 120.02241 * 179.67966 * 20 19 18 22 22 C 1.38457 * 119.95442 * 359.70934 * 20 19 18 23 23 C 1.38198 * 119.97062 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 31 31 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 32 32 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 33 33 H 1.07995 * 119.98838 * 359.97438 * 18 17 16 34 34 H 1.07994 * 120.00916 * 180.25080 * 19 18 17 35 35 H 1.07990 * 120.01490 * 179.97438 * 22 20 19 36 36 H 1.08000 * 119.98710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4453 3.1026 -2.8738 19 6 -3.7281 3.6015 -2.7485 20 6 -3.9267 4.8902 -2.2830 21 9 -5.1799 5.3812 -2.1662 22 6 -2.8400 5.6757 -1.9378 23 6 -1.5585 5.1724 -2.0577 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 2.2720 2.1231 -1.9978 31 1 0.7280 4.1540 -2.8668 32 1 0.0680 2.6143 -3.4687 33 1 -2.2899 2.0992 -3.2417 34 1 -4.5749 2.9880 -3.0184 35 1 -2.9937 6.6811 -1.5750 36 1 -0.7107 5.7847 -1.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:02 Heat of formation + Delta-G solvation = -71.992113 kcal Electronic energy + Delta-G solvation = -19594.599126 eV Core-core repulsion = 16378.624808 eV Total energy + Delta-G solvation = -3215.974318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.86946 -39.64061 -38.33720 -35.07188 -32.60023 -32.20953 -31.11238 -30.82017 -27.67069 -26.35417 -23.09473 -23.03695 -21.81433 -20.17173 -19.30752 -17.66902 -17.10593 -16.39898 -15.93504 -15.59093 -15.45721 -15.07831 -14.67327 -14.26393 -13.86634 -13.55892 -13.36960 -13.08770 -12.70164 -12.42133 -12.04254 -11.71302 -11.59308 -11.32034 -11.24584 -10.99752 -10.95354 -10.82098 -10.33911 -10.17670 -9.63812 -9.11371 -9.06604 -9.02917 -8.52023 -8.43696 -7.82000 -6.13336 -4.23090 1.16892 1.27847 3.24114 3.29856 3.30461 3.40673 3.55571 4.19803 4.28349 4.41887 4.71523 4.75535 4.89989 5.17678 5.23622 5.28722 5.59551 5.60349 5.61031 5.92477 6.06162 6.12968 6.24869 6.38360 6.44906 6.56002 6.65519 6.91561 7.02781 7.19517 7.36425 7.45691 7.60919 7.72815 7.89537 8.17570 8.66863 8.76998 9.14635 9.44626 10.91845 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.003998 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.820829 B = 7002.077315 C = 7236.608450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.710 5.710 14 C 0.501 3.499 15 O -0.541 6.541 16 C -0.109 4.109 17 C -0.062 4.062 18 C -0.078 4.078 19 C -0.152 4.152 20 C 0.088 3.912 21 F -0.145 7.145 22 C -0.152 4.152 23 C -0.077 4.077 24 H 0.038 0.962 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 6.318 -11.394 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.419 6.419 16 C -0.149 4.149 17 C -0.062 4.062 18 C -0.096 4.096 19 C -0.171 4.171 20 C 0.069 3.931 21 F -0.124 7.124 22 C -0.171 4.171 23 C -0.095 4.095 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.975 6.197 -10.496 15.136 hybrid contribution 1.088 0.002 -0.157 1.099 sum -7.887 6.198 -10.653 14.632 Atomic orbital electron populations 1.21833 0.98344 0.97953 1.01231 1.21932 0.92591 0.99877 1.02222 1.18763 0.94101 0.89150 0.81085 0.93377 1.21203 0.90771 1.39140 1.06286 0.92162 1.24888 0.98566 0.94811 0.95390 1.69890 1.35209 1.37504 1.09327 0.86524 0.84903 0.78302 0.77458 1.20202 1.21138 1.20168 1.46501 1.14616 1.56147 1.18537 1.20195 0.82863 0.79624 0.88826 1.90701 1.51285 1.59501 1.40424 1.20773 0.94186 1.01635 0.98296 1.19429 0.94524 0.93883 0.98390 1.20857 0.91092 0.99354 0.98276 1.21053 0.98522 0.94461 1.03086 1.17692 0.79154 0.93535 1.02745 1.91473 1.38845 1.88069 1.94035 1.21057 0.91916 1.00723 1.03419 1.20868 0.96398 0.95258 0.97009 0.94279 0.95948 0.93203 0.95087 0.88363 0.92508 0.78007 0.88334 0.88427 0.85208 0.84992 0.84975 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.63 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.47 11.30 55.43 0.63 -23.85 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.71 -13.86 5.02 -54.93 -0.28 -14.13 16 14 C 0.50 9.17 6.39 -10.98 -0.07 9.10 16 15 O -0.54 -12.08 13.17 5.56 0.07 -12.01 16 16 C -0.11 -1.39 5.83 -29.04 -0.17 -1.56 16 17 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 18 C -0.08 -0.99 9.70 -39.59 -0.38 -1.37 16 19 C -0.15 -1.89 10.03 -39.51 -0.40 -2.28 16 20 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 21 F -0.15 -1.93 17.27 2.25 0.04 -1.89 16 22 C -0.15 -1.90 10.03 -39.52 -0.40 -2.29 16 23 C -0.08 -0.99 9.70 -39.59 -0.38 -1.37 16 24 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.46 8.54 -40.82 -0.35 6.11 16 31 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -30.16 307.47 -7.52 -37.67 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.67 Total: 6.35 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.92 Total: -12.05 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.35 Total: -37.98 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.16 -7.52 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.318 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds