Wall clock time and date at job start Mon Mar 30 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38244 * 119.97308 * 269.72762 * 17 16 14 19 19 C 1.38209 * 120.02398 * 179.72425 * 18 17 16 20 20 C 1.38455 * 119.97031 * 0.56684 * 19 18 17 21 21 F 1.35104 * 120.02241 * 179.67966 * 20 19 18 22 22 C 1.38457 * 119.95442 * 359.70934 * 20 19 18 23 23 C 1.38198 * 119.97062 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 31 31 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 32 32 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 33 33 H 1.07995 * 119.98838 * 359.97438 * 18 17 16 34 34 H 1.07994 * 120.00916 * 180.25080 * 19 18 17 35 35 H 1.07990 * 120.01490 * 179.97438 * 22 20 19 36 36 H 1.08000 * 119.98710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3613 3.8858 -2.5234 18 6 -2.4453 3.1026 -2.8738 19 6 -3.7281 3.6015 -2.7485 20 6 -3.9267 4.8902 -2.2830 21 9 -5.1799 5.3812 -2.1662 22 6 -2.8400 5.6757 -1.9378 23 6 -1.5585 5.1724 -2.0577 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 2.2720 2.1231 -1.9978 31 1 0.7280 4.1540 -2.8668 32 1 0.0680 2.6143 -3.4687 33 1 -2.2899 2.0992 -3.2417 34 1 -4.5749 2.9880 -3.0184 35 1 -2.9937 6.6811 -1.5750 36 1 -0.7107 5.7847 -1.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:02 Heat of formation + Delta-G solvation = -89.740826 kcal Electronic energy + Delta-G solvation = -19595.368768 eV Core-core repulsion = 16378.624808 eV Total energy + Delta-G solvation = -3216.743960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87691 -40.92776 -39.57558 -36.85951 -34.25782 -33.61014 -32.50542 -32.04806 -29.26083 -27.79834 -24.95488 -23.98582 -23.02266 -21.75389 -20.97207 -18.89532 -18.57760 -17.45638 -17.36237 -17.17484 -16.55640 -16.49119 -16.19391 -15.77206 -14.98516 -14.70703 -14.53115 -14.49235 -14.37756 -13.85331 -13.48818 -13.19466 -13.03090 -12.91047 -12.68722 -12.58562 -12.56985 -12.16223 -11.99690 -11.88149 -11.54657 -11.02501 -10.62987 -10.46630 -10.00869 -9.54158 -9.48587 -8.13419 -6.30717 0.17231 0.33534 1.46576 1.47946 1.55636 1.98074 2.37445 2.52906 2.97359 3.16279 3.32129 3.74071 3.80112 4.00457 4.28871 4.30563 4.37317 4.52294 4.60914 4.68311 4.70063 4.80238 5.01363 5.07113 5.11951 5.18448 5.28412 5.30966 5.47716 5.59120 5.60185 5.69171 5.84348 5.96419 5.99797 6.21456 6.78894 7.10192 7.37552 7.71162 8.91421 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.003998 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.820829 B = 7002.077315 C = 7236.608450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.497 3.503 15 O -0.585 6.585 16 C -0.094 4.094 17 C -0.078 4.078 18 C -0.085 4.085 19 C -0.157 4.157 20 C 0.071 3.929 21 F -0.150 7.150 22 C -0.158 4.158 23 C -0.087 4.087 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.263 0.737 30 H 0.405 0.595 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 6.575 -13.431 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.466 6.466 16 C -0.133 4.133 17 C -0.078 4.078 18 C -0.103 4.103 19 C -0.176 4.176 20 C 0.052 3.948 21 F -0.129 7.129 22 C -0.177 4.177 23 C -0.105 4.105 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.233 6.471 -12.585 16.371 hybrid contribution 0.789 -0.043 0.489 0.929 sum -7.444 6.428 -12.096 15.590 Atomic orbital electron populations 1.21665 0.96961 0.98943 1.00321 1.21778 0.93729 0.99338 1.01160 1.18298 0.93396 0.89092 0.81724 0.98712 1.21596 0.91646 1.38750 1.06601 0.90889 1.25767 1.03154 0.94490 0.95116 1.70057 1.37070 1.38467 1.09874 0.85460 0.79343 0.78428 0.77472 1.19653 1.21482 1.18867 1.46256 1.15791 1.56250 1.17401 1.21142 0.81577 0.78568 0.90246 1.90691 1.52375 1.60891 1.42621 1.20739 0.94354 1.02750 0.95471 1.19626 0.94986 0.94275 0.98948 1.21126 0.91027 1.00052 0.98112 1.21314 0.99260 0.94427 1.02593 1.17945 0.79209 0.94182 1.03419 1.91459 1.39100 1.88168 1.94141 1.21299 0.91760 1.01546 1.03091 1.21122 0.96974 0.95579 0.96870 0.93214 0.93883 0.95999 0.93949 0.91421 0.92741 0.76032 0.85475 0.85186 0.83589 0.83224 0.83369 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.83 5.45 30.60 0.17 -5.66 16 3 C 0.28 13.82 2.24 44.25 0.10 13.92 16 4 H -0.01 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -28.17 8.73 25.60 0.22 -27.95 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -52.08 11.30 21.45 0.24 -51.84 16 9 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 N -0.71 -26.78 5.02 -446.09 -2.24 -29.02 16 14 C 0.50 17.54 6.39 87.66 0.56 18.10 16 15 O -0.58 -26.19 13.17 -3.02 -0.04 -26.23 16 16 C -0.09 -2.10 5.83 29.10 0.17 -1.93 16 17 C -0.08 -1.91 4.37 -19.86 -0.09 -2.00 16 18 C -0.09 -1.99 9.70 22.26 0.22 -1.77 16 19 C -0.16 -3.66 10.03 22.31 0.22 -3.44 16 20 C 0.07 1.80 7.30 22.37 0.16 1.96 16 21 F -0.15 -3.87 17.27 44.97 0.78 -3.09 16 22 C -0.16 -3.75 10.03 22.31 0.22 -3.53 16 23 C -0.09 -2.10 9.70 22.26 0.22 -1.88 16 24 H 0.05 2.05 5.64 -2.39 -0.01 2.04 16 25 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.02 1.04 7.85 -2.39 -0.02 1.03 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.40 12.52 8.54 -92.71 -0.79 11.73 16 31 H 0.13 2.17 8.09 -2.39 -0.02 2.15 16 32 H 0.13 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.15 2.88 8.06 -2.92 -0.02 2.86 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -66.75 307.47 4.30 -62.45 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.30 Total: 22.07 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.24 Total: -17.70 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.00 Total: -80.86 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.23 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -66.75 4.30 -62.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.287 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds