Wall clock time and date at job start Mon Mar 30 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34782 * 120.00017 * 2 1 4 4 O 1.21551 * 120.00134 * 183.96001 * 3 2 1 5 5 C 1.47867 * 119.99923 * 3.95581 * 3 2 1 6 6 N 1.34553 * 126.04827 * 353.43966 * 5 3 2 7 7 C 1.30865 * 107.26942 * 179.89331 * 6 5 3 8 8 N 1.34583 * 107.62494 * 0.36008 * 7 6 5 9 9 H 0.97006 * 125.74568 * 179.73635 * 8 7 6 10 10 N 1.28844 * 108.50614 * 359.76945 * 8 7 6 11 11 C 1.46499 * 120.00488 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.78456 * 182.60406 * 11 2 1 13 13 C 1.55160 * 110.72288 * 59.35816 * 11 2 1 14 14 C 1.54907 * 101.58330 * 277.14484 * 13 11 2 15 15 N 1.47421 * 104.83360 * 322.98992 * 14 13 11 16 16 C 1.36936 * 125.64851 * 204.09369 * 15 14 13 17 17 H 1.08000 * 120.00217 * 180.02562 * 16 15 14 18 18 C 1.38807 * 119.99864 * 0.04222 * 16 15 14 19 19 N 1.31610 * 120.00297 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00086 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46985 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47436 * 119.99519 * 20 18 16 23 23 H 1.48496 * 109.47165 * 240.00003 * 20 18 16 24 24 C 1.47027 * 108.70162 * 24.12502 * 15 14 13 25 25 H 1.09007 * 109.46920 * 204.23890 * 1 2 3 26 26 H 1.08998 * 109.47579 * 324.23853 * 1 2 3 27 27 H 1.09003 * 109.47398 * 84.24441 * 1 2 3 28 28 H 1.08001 * 126.18979 * 180.13359 * 7 6 5 29 29 H 1.08997 * 111.00285 * 159.06647 * 13 11 2 30 30 H 1.09005 * 111.03374 * 35.23381 * 13 11 2 31 31 H 1.08996 * 110.36748 * 204.14483 * 14 13 11 32 32 H 1.09000 * 110.46056 * 81.87420 * 14 13 11 33 33 H 0.97001 * 120.00539 * 180.02562 * 19 18 16 34 34 H 1.09002 * 109.87422 * 118.36263 * 24 15 14 35 35 H 1.08994 * 109.87967 * 239.52061 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3521 1.1685 -0.0727 5 6 1.4021 2.4463 0.0883 6 7 0.0653 2.5944 0.0489 7 6 -0.1872 3.8738 0.1589 8 7 0.9920 4.5148 0.2579 9 1 1.1101 5.4735 0.3470 10 7 1.9376 3.6408 0.2138 11 6 2.1975 -1.2687 -0.0006 12 1 3.2725 -1.0946 0.0458 13 6 1.8315 -2.1134 -1.2495 14 6 0.5186 -2.7951 -0.7902 15 7 0.7265 -3.0900 0.6392 16 6 0.0830 -4.0641 1.3549 17 1 0.3065 -4.2011 2.4026 18 6 -0.8562 -4.8757 0.7337 19 7 -1.1288 -4.7087 -0.5430 20 14 -1.7346 -6.2041 1.7102 21 1 -1.2530 -6.1861 3.1149 22 1 -3.1977 -5.9515 1.6849 23 1 -1.4508 -7.5311 1.1072 24 6 1.7386 -2.1646 1.1691 25 1 -0.3633 -0.9371 0.4219 26 1 -0.3634 0.8339 0.6005 27 1 -0.3634 0.1031 -1.0225 28 1 -1.1648 4.3326 0.1649 29 1 2.6032 -2.8538 -1.4602 30 1 1.6581 -1.4755 -2.1162 31 1 0.3545 -3.7171 -1.3479 32 1 -0.3269 -2.1192 -0.9189 33 1 -1.7854 -5.2756 -0.9770 34 1 1.3029 -1.5508 1.9575 35 1 2.5864 -2.7269 1.5602 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033516821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:40 Heat of formation + Delta-G solvation = 109.580782 kcal Electronic energy + Delta-G solvation = -20432.647396 eV Core-core repulsion = 17276.759382 eV Total energy + Delta-G solvation = -3155.888014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.59388 -39.63853 -37.32635 -34.56809 -33.50297 -31.96916 -31.43173 -29.21147 -27.86208 -26.20925 -24.95795 -23.74093 -23.03578 -20.60350 -20.08761 -19.29511 -18.33850 -16.97168 -16.69567 -16.44070 -16.16447 -15.15663 -14.74549 -14.60453 -13.92858 -13.70364 -12.87164 -12.74072 -12.47566 -12.04107 -11.79969 -11.62074 -11.47986 -11.05693 -10.89781 -10.86254 -10.74389 -10.43660 -10.21652 -10.07277 -9.86252 -9.81878 -9.56407 -9.47936 -8.62800 -8.16126 -6.81488 -5.63299 -3.05254 1.31899 2.02857 2.40837 3.17401 3.41328 3.46349 3.47556 3.49449 4.03421 4.50297 4.52676 4.66421 5.45565 5.50616 5.52406 5.72501 5.78835 5.92887 5.95861 6.06607 6.25120 6.37495 6.42299 6.51118 6.63074 6.66503 6.70137 6.81661 7.08338 7.54322 7.65467 7.67506 7.86665 7.89137 8.36995 8.38906 9.23883 9.84338 10.49036 11.40174 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.033584 B = 0.004893 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.532023 B = 5721.103727 C = 6108.617290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.570 5.570 3 C 0.605 3.395 4 O -0.532 6.532 5 C 0.160 3.840 6 N -0.474 5.474 7 C 0.190 3.810 8 N -0.404 5.404 9 H 0.450 0.550 10 N -0.255 5.255 11 C 0.126 3.874 12 H 0.101 0.899 13 C -0.154 4.154 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.127 3.873 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.229 0.771 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.023 0.977 33 H 0.251 0.749 34 H 0.028 0.972 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 17.560 0.007 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.301 5.301 3 C 0.388 3.612 4 O -0.407 6.407 5 C -0.121 4.121 6 N -0.200 5.200 7 C -0.107 4.107 8 N -0.127 5.127 9 H 0.296 0.704 10 N -0.094 5.094 11 C 0.023 3.977 12 H 0.119 0.881 13 C -0.193 4.193 14 C 0.020 3.980 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.355 17.032 -0.066 17.086 hybrid contribution -0.893 0.269 0.521 1.069 sum 0.462 17.300 0.455 17.313 Atomic orbital electron populations 1.22501 0.77506 1.05345 1.02485 1.47583 1.08376 1.04374 1.69798 1.16393 0.85672 0.81094 0.77998 1.90786 1.12677 1.86363 1.50859 1.23925 0.88067 0.93658 1.06454 1.71647 1.13563 1.15152 1.19639 1.26818 0.93782 0.89039 1.01067 1.45266 1.04510 1.11167 1.51730 0.70373 1.74364 1.16847 0.99193 1.19021 1.22239 0.96341 0.81599 0.97547 0.88089 1.23360 1.01761 0.98429 0.95780 1.22113 0.90444 1.00105 0.85300 1.44555 1.44823 1.36633 1.06915 1.19116 1.15532 1.07226 0.93053 0.90454 1.24759 0.99674 0.99853 0.96228 1.69810 1.36660 1.41319 1.09183 0.86020 0.79225 0.81520 0.78850 1.20587 1.21808 1.21814 1.21631 0.93021 0.91336 0.93940 0.88460 0.88981 0.92946 0.75513 0.90917 0.91979 0.87678 0.95901 0.93814 0.95370 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 7.73 59.84 0.46 1.59 16 2 N -0.57 -10.55 2.83 -172.94 -0.49 -11.04 16 3 C 0.61 11.31 7.68 -12.32 -0.09 11.21 16 4 O -0.53 -11.19 16.47 5.32 0.09 -11.10 16 5 C 0.16 2.53 7.65 -156.35 -1.20 1.33 16 6 N -0.47 -6.25 7.87 -12.37 -0.10 -6.35 16 7 C 0.19 1.52 13.14 -90.49 -1.19 0.33 16 8 N -0.40 -3.25 6.93 29.56 0.20 -3.05 16 9 H 0.45 1.44 8.96 -190.21 -1.71 -0.26 16 10 N -0.26 -3.53 12.30 32.07 0.39 -3.14 16 11 C 0.13 2.45 3.57 -66.10 -0.24 2.21 16 12 H 0.10 1.94 7.02 -51.93 -0.36 1.57 16 13 C -0.15 -3.05 6.60 -24.58 -0.16 -3.21 16 14 C 0.14 3.44 5.01 -2.53 -0.01 3.43 16 15 N -0.60 -15.11 2.90 -170.08 -0.49 -15.60 16 16 C -0.22 -6.05 10.27 -15.06 -0.15 -6.21 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.27 5.49 -17.44 -0.10 -0.36 16 19 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.13 2.74 6.16 -3.06 -0.02 2.72 16 25 H 0.10 2.01 4.99 -51.93 -0.26 1.75 16 26 H 0.09 1.51 5.26 -51.93 -0.27 1.24 16 27 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 28 H 0.23 0.55 8.06 -52.49 -0.42 0.12 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.11 2.84 5.87 -51.93 -0.31 2.53 16 32 H 0.02 0.56 5.74 -51.93 -0.30 0.26 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.03 0.61 7.93 -51.93 -0.41 0.20 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 286.02 15.07 4.31 4.31 Total: -1.00 -34.50 286.02 -8.51 -43.01 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.27 Total: -1.14 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -2.70 Total: 13.04 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.08 Total: -64.92 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.50 -8.51 -43.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033516821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.595 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds