Wall clock time and date at job start Mon Mar 30 2020 00:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38165 * 120.02806 * 2 1 4 4 C 1.38240 * 120.05048 * 180.29764 * 3 2 1 5 5 C 1.38290 * 120.11559 * 359.67481 * 4 3 2 6 6 C 1.38120 * 120.05194 * 359.97438 * 5 4 3 7 7 C 1.38713 * 120.02593 * 179.67083 * 2 1 3 8 8 O 1.35901 * 120.05566 * 0.02562 * 7 2 1 9 9 C 1.42902 * 117.00090 * 179.72296 * 8 7 2 10 10 C 1.53004 * 109.47060 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47065 * 55.00398 * 10 9 8 12 12 O 1.42893 * 109.46856 * 295.00036 * 10 9 8 13 13 C 1.52997 * 109.46680 * 175.00097 * 10 9 8 14 14 N 1.46507 * 109.46823 * 185.00168 * 13 10 9 15 15 C 1.46497 * 120.00169 * 90.00383 * 14 13 10 16 16 C 1.36938 * 119.99401 * 269.99773 * 14 13 10 17 17 H 1.07995 * 120.00195 * 22.93270 * 16 14 13 18 18 C 1.38815 * 119.99786 * 202.92829 * 16 14 13 19 19 N 1.31619 * 119.99710 * 13.12316 * 18 16 14 20 20 Si 1.86794 * 120.00073 * 193.12789 * 18 16 14 21 21 H 1.48498 * 109.47473 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47158 * 120.00314 * 20 18 16 23 23 H 1.48504 * 109.47136 * 239.99642 * 20 18 16 24 24 H 1.08991 * 109.47173 * 270.33006 * 1 2 3 25 25 H 1.09005 * 109.46952 * 30.32816 * 1 2 3 26 26 H 1.08996 * 109.47106 * 150.32440 * 1 2 3 27 27 H 1.07995 * 119.97321 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.94342 * 179.69725 * 4 3 2 29 29 H 1.08007 * 119.97423 * 180.02562 * 5 4 3 30 30 H 1.08003 * 120.02489 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46754 * 60.00164 * 9 8 7 32 32 H 1.09003 * 109.47195 * 300.00275 * 9 8 7 33 33 H 0.96704 * 114.00402 * 299.99726 * 12 10 9 34 34 H 1.09000 * 109.47146 * 304.99857 * 13 10 9 35 35 H 1.09003 * 109.47133 * 65.00196 * 13 10 9 36 36 H 1.08993 * 109.47540 * 95.12205 * 15 14 13 37 37 H 1.08998 * 109.46578 * 215.12637 * 15 14 13 38 38 H 1.09000 * 109.46969 * 335.12094 * 15 14 13 39 39 H 0.97002 * 119.99790 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0057 6 6 3.5886 -1.1976 0.0016 7 6 2.2012 -1.2010 0.0069 8 8 1.5234 -2.3788 0.0131 9 6 2.3033 -3.5762 0.0139 10 6 1.3730 -4.7909 0.0206 11 1 0.6813 -4.7234 -0.8191 12 8 0.6356 -4.8193 1.2442 13 6 2.2034 -6.0698 -0.1043 14 7 1.3082 -7.2241 -0.2181 15 6 0.8615 -7.6774 -1.5376 16 6 0.8892 -7.8791 0.9091 17 1 0.8911 -7.3702 1.8616 18 6 0.4621 -9.1974 0.8274 19 7 0.6966 -9.8988 -0.2614 20 14 -0.4456 -9.9758 2.2624 21 1 -0.5810 -8.9839 3.3592 22 1 -1.7943 -10.4103 1.8180 23 1 0.3173 -11.1524 2.7511 24 1 -0.3633 0.0059 1.0276 25 1 -0.3633 0.8871 -0.5189 26 1 -0.3633 -0.8928 -0.5088 27 1 1.6585 2.1315 -0.0004 28 1 4.1196 2.1329 -0.0112 29 1 5.3553 0.0039 -0.0101 30 1 4.1313 -2.1314 0.0025 31 1 2.9355 -3.5974 0.9016 32 1 2.9289 -3.6030 -0.8784 33 1 1.1884 -4.8790 2.0354 34 1 2.8327 -6.0092 -0.9922 35 1 2.8316 -6.1829 0.7793 36 1 1.5124 -8.4793 -1.8858 37 1 -0.1624 -8.0446 -1.4680 38 1 0.9021 -6.8453 -2.2405 39 1 0.3984 -10.8201 -0.3184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057924823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:40 Heat of formation + Delta-G solvation = -64.959014 kcal Electronic energy + Delta-G solvation = -19892.549543 eV Core-core repulsion = 16800.340508 eV Total energy + Delta-G solvation = -3092.209035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19602 -39.21068 -37.93083 -36.47598 -33.73785 -33.34525 -31.50209 -30.59056 -28.03968 -27.72221 -27.16678 -24.23164 -22.65967 -22.58531 -21.88906 -19.09628 -18.66580 -17.70429 -17.37318 -16.74856 -16.58910 -16.33030 -15.79632 -15.51168 -15.26460 -15.03182 -14.65827 -14.23868 -14.03131 -13.97285 -13.68362 -13.15374 -13.08549 -12.87667 -12.80353 -12.54487 -12.25892 -12.21436 -12.09106 -11.95106 -11.89505 -11.81618 -11.60690 -11.04556 -10.57249 -9.74642 -9.03397 -8.74142 -7.80251 -5.27991 0.40039 0.52825 1.45726 1.48505 1.58510 2.18458 2.54242 2.84213 3.34094 3.54861 3.66430 3.87254 3.92737 4.00669 4.10879 4.24887 4.27402 4.41775 4.43601 4.50116 4.55835 4.72726 4.79295 4.79473 4.80827 4.88988 5.00197 5.17989 5.32683 5.33367 5.45471 5.55513 5.62604 5.66120 5.72486 5.93523 6.34805 6.51003 6.94645 7.17498 7.87472 8.30657 9.23451 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037416 B = 0.003717 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.165217 B = 7531.546565 C = 7757.429115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.142 4.142 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.218 4.218 7 C 0.103 3.897 8 O -0.324 6.324 9 C 0.039 3.961 10 C 0.099 3.901 11 H 0.076 0.924 12 O -0.563 6.563 13 C 0.126 3.874 14 N -0.611 5.611 15 C 0.173 3.827 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.061 4.061 19 N -0.943 5.943 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.297 1.297 23 H -0.291 1.291 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.377 0.623 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.030 0.970 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.066 22.222 0.154 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.143 4.143 3 C -0.106 4.106 4 C -0.178 4.178 5 C -0.109 4.109 6 C -0.237 4.237 7 C 0.058 3.942 8 O -0.237 6.237 9 C -0.037 4.037 10 C 0.037 3.963 11 H 0.094 0.906 12 O -0.369 6.369 13 C -0.001 4.001 14 N -0.333 5.333 15 C 0.028 3.972 16 C -0.374 4.374 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.591 5.591 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.224 1.224 23 H -0.219 1.219 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.168 0.832 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.224 0.776 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.309 22.042 -0.295 22.929 hybrid contribution 0.004 -1.168 0.793 1.412 sum 6.312 20.874 0.499 21.813 Atomic orbital electron populations 1.20580 0.90335 1.02677 1.02303 1.19628 0.97191 0.90969 1.06478 1.21200 0.94744 0.96872 0.97756 1.21406 0.94173 0.99048 1.03211 1.21286 1.01047 0.91531 0.97082 1.21501 0.92572 1.00765 1.08862 1.19288 0.91411 0.85974 0.97555 1.86136 1.36502 1.12635 1.88467 1.23604 0.94536 0.82531 1.03038 1.22657 0.94015 0.92078 0.87529 0.90630 1.86607 1.37951 1.96550 1.15780 1.21453 0.91381 0.85908 1.01355 1.43998 1.54188 1.32022 1.03135 1.20573 0.97062 0.94660 0.84880 1.19564 1.36166 0.92718 0.88949 0.90698 1.25769 1.03049 0.96846 0.99847 1.70234 1.50805 1.08595 1.29451 0.85210 0.77673 0.78111 0.79512 1.19088 1.22383 1.21851 0.91502 0.89791 0.93087 0.83220 0.83320 0.83545 0.84597 0.90342 0.89917 0.77584 0.91447 0.91892 0.97168 0.97096 0.95151 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.79 71.24 0.70 -1.57 16 2 C -0.14 -3.39 5.89 -19.77 -0.12 -3.51 16 3 C -0.09 -1.62 9.70 22.25 0.22 -1.40 16 4 C -0.16 -2.63 10.04 22.28 0.22 -2.41 16 5 C -0.09 -1.63 10.04 22.25 0.22 -1.41 16 6 C -0.22 -4.83 9.04 22.36 0.20 -4.63 16 7 C 0.10 2.74 6.66 22.50 0.15 2.89 16 8 O -0.32 -9.82 9.15 -87.79 -0.80 -10.63 16 9 C 0.04 1.03 4.37 71.98 0.31 1.35 16 10 C 0.10 3.40 3.49 30.59 0.11 3.50 16 11 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 12 O -0.56 -21.41 12.54 -144.34 -1.81 -23.22 16 13 C 0.13 4.71 5.32 86.38 0.46 5.17 16 14 N -0.61 -30.42 2.90 -726.94 -2.11 -32.53 16 15 C 0.17 8.70 8.98 127.77 1.15 9.85 16 16 C -0.24 -13.36 9.21 84.03 0.77 -12.58 16 17 H 0.08 3.96 7.58 -2.91 -0.02 3.94 16 18 C -0.06 -3.48 5.10 84.86 0.43 -3.05 16 19 N -0.94 -56.75 10.71 21.65 0.23 -56.52 16 20 Si 0.97 46.21 29.57 68.60 2.03 48.24 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.41 8.09 -2.38 -0.02 1.39 16 26 H 0.05 1.33 7.53 -2.39 -0.02 1.31 16 27 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.14 2.63 6.30 -2.91 -0.02 2.62 16 31 H 0.08 1.80 7.66 -2.39 -0.02 1.78 16 32 H 0.08 1.90 7.66 -2.39 -0.02 1.88 16 33 H 0.38 11.66 9.05 -74.05 -0.67 10.99 16 34 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 36 H 0.01 0.55 7.34 -2.39 -0.02 0.53 16 37 H 0.01 0.57 7.34 -2.39 -0.02 0.56 16 38 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -69.53 325.29 2.73 -66.79 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.36 Total: 15.66 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.83 Total: -7.79 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -1.88 Total: -89.05 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -2.61 Total: -33.85 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -69.53 2.73 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057924823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.836 kcal (2) G-P(sol) polarization free energy of solvation -69.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds