Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.40368 * 126.64603 * 59.68549 * 4 2 1 6 6 C 1.35124 * 107.11639 * 179.87547 * 5 4 2 7 7 O 1.33929 * 108.76782 * 0.39385 * 6 5 4 8 8 C 1.34913 * 109.38401 * 359.75062 * 7 6 5 9 9 C 1.46653 * 125.98901 * 180.02562 * 8 7 6 10 10 O 1.21693 * 120.00160 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99950 * 359.95769 * 9 8 7 12 12 C 1.46500 * 120.00049 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.46960 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47055 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47191 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00393 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00337 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99608 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00393 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47227 * 90.00075 * 19 17 15 21 21 H 1.48498 * 109.47330 * 209.99949 * 19 17 15 22 22 H 1.48495 * 109.47084 * 330.00037 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.08005 * 126.43786 * 0.02733 * 5 4 2 31 31 H 1.08003 * 125.61497 * 180.14782 * 6 5 4 32 32 H 0.97001 * 119.99720 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47547 * 300.00240 * 12 11 9 34 34 H 1.09011 * 109.46855 * 60.00370 * 12 11 9 35 35 H 1.09006 * 109.47511 * 300.00240 * 13 12 11 36 36 H 1.09005 * 109.47293 * 60.00441 * 13 12 11 37 37 H 1.08998 * 109.47056 * 300.00188 * 14 13 12 38 38 H 1.08997 * 109.47326 * 60.00086 * 14 13 12 39 39 H 0.97000 * 119.99831 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7758 -0.3583 -2.5647 6 6 2.4176 -1.2567 -3.3436 7 8 3.0432 -2.1408 -2.5558 8 6 2.8205 -1.8250 -1.2632 9 6 3.3352 -2.5511 -0.0977 10 8 3.0655 -2.1683 1.0255 11 7 4.1067 -3.6427 -0.2705 12 6 4.6213 -4.3677 0.8939 13 6 5.4608 -5.5573 0.4237 14 6 5.9977 -6.3149 1.6397 15 6 6.8251 -7.4862 1.1767 16 1 6.9547 -7.6721 0.1207 17 6 7.4168 -8.3208 2.1011 18 7 7.2586 -8.0948 3.3870 19 14 8.4417 -9.7731 1.5271 20 1 9.8568 -9.3501 1.3726 21 1 8.3583 -10.8651 2.5301 22 1 7.9250 -10.2588 0.2225 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.1796 0.4757 -2.9047 31 1 2.4218 -1.2633 -4.4236 32 1 4.3217 -3.9478 -1.1658 33 1 5.2402 -3.7001 1.4933 34 1 3.7867 -4.7277 1.4957 35 1 4.8415 -6.2249 -0.1755 36 1 6.2953 -5.1978 -0.1784 37 1 6.6169 -5.6476 2.2392 38 1 5.1631 -6.6745 2.2415 39 1 7.6745 -8.6821 4.0374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283906829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = -73.125407 kcal Electronic energy + Delta-G solvation = -19394.405036 eV Core-core repulsion = 16301.841879 eV Total energy + Delta-G solvation = -3092.563157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.70744 -40.57030 -37.44671 -36.74673 -35.21953 -33.19037 -32.71733 -30.88423 -28.56141 -28.00383 -25.54300 -23.86894 -23.51713 -22.37832 -21.50999 -20.60844 -19.02537 -18.51274 -17.43154 -17.11353 -16.81142 -16.51410 -16.43206 -15.76232 -15.23471 -15.11531 -14.79397 -14.31577 -14.10296 -14.02064 -13.78352 -13.55073 -13.43751 -13.05548 -12.76333 -12.59262 -12.40896 -12.24668 -12.17929 -12.04072 -11.71277 -11.53116 -11.24116 -10.92097 -10.66516 -10.56025 -10.30606 -9.56676 -8.20243 -6.31761 0.03178 1.41346 1.42769 1.43343 1.53779 1.69624 2.07285 2.23310 2.42361 3.13509 3.64364 3.75960 3.84871 4.11264 4.16869 4.28939 4.32801 4.42269 4.50585 4.55009 4.76670 4.79459 4.87685 4.90280 4.95667 5.01287 5.03808 5.13325 5.18988 5.28914 5.36354 5.42289 5.49472 5.53928 5.68716 5.82899 5.89729 6.21336 6.43955 6.85288 6.99926 7.37761 8.91916 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.003135 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.653770 B = 8928.988222 C = 9466.972419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.229 4.229 6 C 0.014 3.986 7 O -0.172 6.172 8 C -0.119 4.119 9 C 0.594 3.406 10 O -0.558 6.558 11 N -0.707 5.707 12 C 0.130 3.870 13 C -0.103 4.103 14 C 0.024 3.976 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.261 1.261 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.182 0.818 31 H 0.257 0.743 32 H 0.415 0.585 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.006 1.006 38 H -0.006 1.006 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 17.893 -15.958 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C -0.190 4.190 4 C -0.080 4.080 5 C -0.248 4.248 6 C -0.055 4.055 7 O -0.068 6.068 8 C -0.171 4.171 9 C 0.382 3.618 10 O -0.439 6.439 11 N -0.357 5.357 12 C 0.006 3.994 13 C -0.141 4.141 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.185 1.185 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.200 0.800 31 H 0.272 0.728 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.012 0.988 38 H 0.013 0.987 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.618 17.807 -15.064 26.518 hybrid contribution 0.697 -0.965 0.022 1.191 sum -11.921 16.841 -15.042 25.534 Atomic orbital electron populations 1.21729 0.92716 1.01454 1.03058 1.20039 0.97041 0.96544 0.94265 1.21727 1.00304 0.93866 1.03054 1.20914 0.95856 0.93657 0.97553 1.21988 1.07339 1.04799 0.90675 1.25358 0.93505 0.88068 0.98558 1.84061 1.59575 1.47963 1.15197 1.21536 1.10647 1.02333 0.82550 1.16918 0.78261 0.80082 0.86541 1.90778 1.60664 1.68276 1.24202 1.45939 1.50651 1.27896 1.11232 1.21352 0.97296 0.93313 0.87425 1.21613 0.98477 0.94802 0.99162 1.18935 0.94761 0.94286 0.93340 1.21676 1.31143 1.11758 0.93456 0.91629 1.26024 0.97945 1.01170 0.94932 1.70111 1.45667 1.39934 1.01761 0.85406 0.78832 0.78217 0.78342 1.19796 1.20958 1.18476 0.94058 0.90771 0.91329 0.90521 0.94063 0.90777 0.91329 0.80024 0.72754 0.74862 0.92499 0.92508 0.91445 0.91424 0.98760 0.98745 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.09 71.98 0.65 -1.73 16 2 C -0.06 -1.38 3.19 -11.54 -0.04 -1.41 16 3 C -0.13 -2.39 9.10 71.98 0.65 -1.73 16 4 C -0.08 -1.78 4.87 -19.74 -0.10 -1.87 16 5 C -0.23 -3.49 10.41 22.07 0.23 -3.26 16 6 C 0.01 0.19 12.08 67.10 0.81 1.00 16 7 O -0.17 -3.70 10.40 -5.02 -0.05 -3.75 16 8 C -0.12 -3.23 7.13 24.07 0.17 -3.06 16 9 C 0.59 19.68 7.79 86.44 0.67 20.35 16 10 O -0.56 -21.88 14.41 -4.33 -0.06 -21.95 16 11 N -0.71 -22.05 5.55 -467.10 -2.59 -24.64 16 12 C 0.13 4.76 5.67 86.38 0.49 5.25 16 13 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 14 C 0.02 1.29 4.97 29.85 0.15 1.44 16 15 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 19 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 1.01 8.05 -2.39 -0.02 0.99 16 25 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.08 2.32 5.48 -2.39 -0.01 2.30 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.26 0.62 8.06 -2.91 -0.02 0.59 16 32 H 0.41 10.80 8.23 -92.71 -0.76 10.04 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.72 332.03 4.43 -67.28 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.27 Total: 13.04 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 4.56 Total: -19.01 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.31 Total: -81.72 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.11 Total: -25.69 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.72 4.43 -67.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283906829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.841 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds