Wall clock time and date at job start Mon Mar 30 2020 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47310 * 300.00009 * 11 10 9 13 13 C 1.52997 * 109.47158 * 60.00030 * 11 10 9 14 14 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47014 * 180.02562 * 14 11 10 16 16 H 1.08004 * 120.00229 * 359.97438 * 15 14 11 17 17 C 1.37886 * 120.00057 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99688 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47290 * 89.99862 * 19 17 15 21 21 H 1.48497 * 109.47272 * 209.99841 * 19 17 15 22 22 H 1.48507 * 109.47135 * 329.99845 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 26 26 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 27 27 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 28 28 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 29 29 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 30 30 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 31 31 H 1.09010 * 109.46673 * 59.99730 * 12 11 10 32 32 H 1.08996 * 109.47555 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.46914 * 300.00414 * 12 11 10 34 34 H 1.09005 * 109.47303 * 59.99739 * 13 11 10 35 35 H 1.09003 * 109.47716 * 179.97438 * 13 11 10 36 36 H 1.08998 * 109.47348 * 300.00110 * 13 11 10 37 37 H 1.09007 * 109.47308 * 299.99399 * 14 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 14 11 10 39 39 H 0.96998 * 119.99276 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 4.4254 -5.5242 -1.2792 13 6 4.4244 -5.5375 1.2192 14 6 3.1276 -7.2625 -0.0403 15 6 4.3337 -8.1660 -0.0440 16 1 5.3267 -7.7412 -0.0410 17 6 4.1695 -9.5350 -0.0524 18 7 2.9604 -10.0522 -0.0565 19 14 5.6645 -10.6549 -0.0577 20 1 6.0595 -10.9601 1.3409 21 1 5.3344 -11.9179 -0.7655 22 1 6.7883 -9.9771 -0.7527 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5089 26 1 2.0306 2.1595 0.0004 27 1 4.5046 1.2916 0.0072 28 1 3.7436 -3.2746 -0.0186 29 1 1.7610 -5.0832 0.8616 30 1 1.7609 -5.0735 -0.9183 31 1 4.7507 -4.4838 -1.2735 32 1 5.2980 -6.1774 -1.2821 33 1 3.8269 -5.7128 -2.1704 34 1 3.8252 -5.7356 2.1080 35 1 5.2965 -6.1913 1.2164 36 1 4.7497 -4.4972 1.2250 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 2.8450 -11.0153 -0.0620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345914808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:06 Heat of formation + Delta-G solvation = -45.253371 kcal Electronic energy + Delta-G solvation = -20011.507912 eV Core-core repulsion = 16920.153377 eV Total energy + Delta-G solvation = -3091.354535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.82101 -39.42673 -37.14617 -34.40888 -33.50734 -32.12121 -30.55730 -28.02912 -27.05332 -26.51418 -26.04903 -23.39892 -22.33921 -21.17819 -19.99157 -18.63756 -17.64005 -16.50511 -16.35631 -16.10296 -15.48057 -14.85227 -14.52322 -14.27133 -13.55345 -13.48592 -13.20246 -13.15182 -13.06899 -12.76090 -12.64493 -12.16611 -12.06361 -11.89441 -11.17221 -11.01787 -10.85665 -10.64144 -10.42471 -10.26224 -10.07641 -9.89121 -9.86145 -9.20247 -8.97491 -8.93799 -8.59244 -8.36158 -6.00317 -4.01543 0.99370 2.18994 2.63109 3.24348 3.30960 3.37702 3.38881 3.42293 4.45020 4.55669 4.62734 4.86449 5.30353 5.35268 5.37748 5.45870 5.60275 5.62848 5.63906 5.74621 5.88505 6.01343 6.16735 6.20292 6.24599 6.28243 6.37659 6.50636 6.62742 6.69459 6.76417 7.04775 7.06587 7.11141 7.62739 7.66101 7.75388 7.98307 8.23815 8.40432 9.03120 9.61589 11.11179 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.003765 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.528068 B = 7434.604583 C = 7890.468288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.094 4.094 3 C -0.226 4.226 4 C -0.010 4.010 5 O -0.163 6.163 6 C -0.078 4.078 7 C 0.595 3.405 8 O -0.523 6.523 9 N -0.709 5.709 10 C 0.127 3.873 11 C -0.073 4.073 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.154 0.846 27 H 0.209 0.791 28 H 0.403 0.597 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 21.108 0.094 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.245 4.245 4 C -0.080 4.080 5 O -0.058 6.058 6 C -0.130 4.130 7 C 0.380 3.620 8 O -0.402 6.402 9 N -0.359 5.359 10 C 0.004 3.996 11 C -0.073 4.073 12 C -0.186 4.186 13 C -0.186 4.186 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.172 0.828 27 H 0.225 0.775 28 H 0.239 0.761 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.305 20.486 0.083 20.488 hybrid contribution 1.259 -0.320 0.025 1.299 sum 1.564 20.166 0.108 20.227 Atomic orbital electron populations 1.20418 0.88248 1.03529 1.02873 1.20641 0.97701 0.90990 1.00373 1.21728 0.92497 1.00072 1.10194 1.24326 0.99899 0.80738 1.02991 1.84074 1.28513 1.22622 1.70627 1.22094 0.81322 0.95178 1.14433 1.16575 0.85991 0.81774 0.77638 1.90839 1.15741 1.82290 1.51324 1.46154 1.09774 1.06982 1.73016 1.21738 0.97965 0.77702 1.02177 1.20919 0.93096 0.98109 0.95203 1.21776 1.00823 0.98686 0.97266 1.21774 1.00827 0.98712 0.97239 1.19092 0.96744 0.86731 0.97548 1.21184 0.92750 0.90731 1.50310 0.92240 1.25014 0.95562 0.98379 0.95536 1.69966 1.20798 1.11777 1.50841 0.86643 0.83233 0.80381 0.78023 1.20772 1.21336 1.19940 0.90885 0.89355 0.91671 0.82820 0.77483 0.76080 0.91372 0.91370 0.95228 0.91327 0.93283 0.93288 0.91332 0.95213 0.96278 0.96262 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.82 36.01 0.35 -0.70 16 2 C -0.09 -1.16 6.20 -104.43 -0.65 -1.81 16 3 C -0.23 -2.14 10.83 -39.89 -0.43 -2.57 16 4 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 5 O -0.16 -1.96 10.40 5.02 0.05 -1.90 16 6 C -0.08 -1.09 7.13 -36.80 -0.26 -1.35 16 7 C 0.59 9.61 7.79 -12.86 -0.10 9.51 16 8 O -0.52 -9.75 14.74 5.20 0.08 -9.67 16 9 N -0.71 -11.00 4.95 -61.62 -0.31 -11.30 16 10 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 11 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 12 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 13 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 14 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 15 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 16 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.16 6.44 -51.93 -0.33 0.83 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 27 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 28 H 0.40 5.62 5.92 -40.82 -0.24 5.37 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.03 0.44 6.86 -51.92 -0.36 0.08 16 32 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 36 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -30.85 320.98 -5.97 -36.82 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.64 Total: 2.11 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.71 Total: -11.42 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.43 Total: -36.92 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.13 Total: -11.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.85 -5.97 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345914808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.431 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds