Wall clock time and date at job start Mon Mar 30 2020 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47310 * 300.00009 * 11 10 9 13 13 C 1.52997 * 109.47158 * 60.00030 * 11 10 9 14 14 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.47014 * 180.02562 * 14 11 10 16 16 H 1.08004 * 120.00229 * 359.97438 * 15 14 11 17 17 C 1.37886 * 120.00057 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99688 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47290 * 89.99862 * 19 17 15 21 21 H 1.48497 * 109.47272 * 209.99841 * 19 17 15 22 22 H 1.48507 * 109.47135 * 329.99845 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 26 26 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 27 27 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 28 28 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 29 29 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 30 30 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 31 31 H 1.09010 * 109.46673 * 59.99730 * 12 11 10 32 32 H 1.08996 * 109.47555 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.46914 * 300.00414 * 12 11 10 34 34 H 1.09005 * 109.47303 * 59.99739 * 13 11 10 35 35 H 1.09003 * 109.47716 * 179.97438 * 13 11 10 36 36 H 1.08998 * 109.47348 * 300.00110 * 13 11 10 37 37 H 1.09007 * 109.47308 * 299.99399 * 14 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 14 11 10 39 39 H 0.96998 * 119.99276 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 4.4254 -5.5242 -1.2792 13 6 4.4244 -5.5375 1.2192 14 6 3.1276 -7.2625 -0.0403 15 6 4.3337 -8.1660 -0.0440 16 1 5.3267 -7.7412 -0.0410 17 6 4.1695 -9.5350 -0.0524 18 7 2.9604 -10.0522 -0.0565 19 14 5.6645 -10.6549 -0.0577 20 1 6.0595 -10.9601 1.3409 21 1 5.3344 -11.9179 -0.7655 22 1 6.7883 -9.9771 -0.7527 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5089 26 1 2.0306 2.1595 0.0004 27 1 4.5046 1.2916 0.0072 28 1 3.7436 -3.2746 -0.0186 29 1 1.7610 -5.0832 0.8616 30 1 1.7609 -5.0735 -0.9183 31 1 4.7507 -4.4838 -1.2735 32 1 5.2980 -6.1774 -1.2821 33 1 3.8269 -5.7128 -2.1704 34 1 3.8252 -5.7356 2.1080 35 1 5.2965 -6.1913 1.2164 36 1 4.7497 -4.4972 1.2250 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 2.8450 -11.0153 -0.0620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345914808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:06 Heat of formation + Delta-G solvation = -64.703528 kcal Electronic energy + Delta-G solvation = -20012.351334 eV Core-core repulsion = 16920.153377 eV Total energy + Delta-G solvation = -3092.197957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.65962 -40.74183 -38.68748 -35.54405 -34.89851 -33.95209 -31.42342 -29.32569 -28.74486 -27.99046 -27.39143 -25.09221 -23.53264 -22.13251 -21.12858 -19.93880 -18.93052 -18.36452 -17.43656 -17.12022 -16.76172 -16.42572 -16.17582 -15.47168 -15.05500 -14.75938 -14.58003 -14.25668 -14.05982 -13.95065 -13.86699 -13.77166 -13.50957 -12.88143 -12.77931 -12.72020 -12.61639 -12.35103 -12.24169 -11.99287 -11.56302 -11.37136 -10.96826 -10.86170 -10.65789 -10.50824 -10.25849 -9.54853 -8.13662 -6.21363 0.04163 1.43202 1.43358 1.43555 1.53936 1.71429 2.08825 2.26058 2.45638 3.20922 3.74091 3.83311 3.91988 3.99854 4.05266 4.19661 4.54851 4.63693 4.66687 4.68974 4.71547 4.76318 4.81344 4.93327 5.04187 5.10169 5.11845 5.21619 5.31711 5.41394 5.48517 5.49102 5.50753 5.56061 5.78485 5.88356 5.90276 6.30416 6.46823 6.93427 7.02366 7.46298 8.98909 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.003765 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.528068 B = 7434.604583 C = 7890.468288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.015 3.985 5 O -0.172 6.172 6 C -0.119 4.119 7 C 0.593 3.407 8 O -0.560 6.560 9 N -0.701 5.701 10 C 0.140 3.860 11 C -0.065 4.065 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.072 0.928 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.260 1.260 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.185 0.815 27 H 0.257 0.743 28 H 0.413 0.587 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.064 0.936 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 24.022 0.120 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.055 4.055 5 O -0.068 6.068 6 C -0.170 4.170 7 C 0.381 3.619 8 O -0.441 6.441 9 N -0.352 5.352 10 C 0.016 3.984 11 C -0.065 4.065 12 C -0.180 4.180 13 C -0.180 4.180 14 C 0.003 3.997 15 C -0.553 4.553 16 H 0.090 0.910 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.184 1.184 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.202 0.798 27 H 0.273 0.727 28 H 0.251 0.749 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.844 23.424 0.109 23.596 hybrid contribution 0.451 -1.072 0.019 1.163 sum 3.295 22.352 0.128 22.594 Atomic orbital electron populations 1.20432 0.88144 1.03546 1.03037 1.21031 0.98227 0.91833 0.98701 1.22096 0.92209 1.00650 1.10386 1.25383 1.01489 0.79559 0.99024 1.84056 1.27348 1.24384 1.70978 1.21581 0.82695 0.94033 1.18680 1.16886 0.85492 0.82894 0.76605 1.90814 1.17161 1.83213 1.52915 1.45918 1.10289 1.05719 1.73254 1.21346 0.97009 0.79156 1.00856 1.20720 0.93954 0.94795 0.97071 1.21702 0.99759 1.00645 0.95853 1.21702 0.99781 1.00685 0.95805 1.18962 0.95614 0.90544 0.94566 1.21591 0.93708 0.91121 1.48831 0.90965 1.25941 0.98420 1.00336 0.95442 1.70121 1.23254 1.12014 1.52536 0.85539 0.79795 0.78056 0.78218 1.20157 1.21554 1.18370 0.90581 0.91969 0.88999 0.79796 0.72678 0.74885 0.92838 0.92835 0.91695 0.92341 0.94192 0.94201 0.92301 0.91685 0.99357 0.99333 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.82 71.24 0.70 -1.36 16 2 C -0.09 -2.18 6.20 -19.74 -0.12 -2.30 16 3 C -0.23 -3.54 10.83 22.07 0.24 -3.30 16 4 C 0.01 0.19 12.08 67.10 0.81 1.00 16 5 O -0.17 -3.63 10.40 -4.97 -0.05 -3.68 16 6 C -0.12 -3.16 7.13 24.07 0.17 -2.99 16 7 C 0.59 19.36 7.79 86.44 0.67 20.03 16 8 O -0.56 -21.74 14.74 -4.32 -0.06 -21.80 16 9 N -0.70 -21.52 4.95 -467.10 -2.31 -23.83 16 10 C 0.14 5.14 4.56 86.38 0.39 5.53 16 11 C -0.06 -2.50 0.54 -52.18 -0.03 -2.53 16 12 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 13 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 14 C 0.04 2.08 4.04 29.85 0.12 2.20 16 15 C -0.51 -27.64 7.65 25.60 0.20 -27.44 16 16 H 0.07 3.63 5.68 -2.91 -0.02 3.62 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 19 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.69 6.44 -2.39 -0.02 1.67 16 25 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 27 H 0.26 0.53 8.06 -2.91 -0.02 0.51 16 28 H 0.41 10.75 5.92 -92.71 -0.55 10.20 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.78 6.86 -2.38 -0.02 1.76 16 32 H 0.06 2.14 6.62 -2.39 -0.02 2.13 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 36 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 37 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -70.14 320.98 5.16 -64.98 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.50 Total: 13.75 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.77 Total: -18.26 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.03 Total: -80.65 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.12 Total: -25.48 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.14 5.16 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345914808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.277 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds