Wall clock time and date at job start Mon Mar 30 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00253 * 2 1 4 4 C 1.53008 * 109.46841 * 121.14112 * 3 2 1 5 5 C 1.50694 * 112.84828 * 55.73014 * 4 3 2 6 6 O 1.21282 * 120.00061 * 246.63276 * 5 4 3 7 7 N 1.34776 * 120.00125 * 66.63416 * 5 4 3 8 8 C 1.47070 * 136.06003 * 354.60867 * 7 5 4 9 9 C 1.53236 * 88.08504 * 207.20364 * 8 7 5 10 10 O 1.42899 * 114.01580 * 87.71181 * 9 8 7 11 11 C 1.50693 * 114.32703 * 220.46852 * 9 8 7 12 12 H 1.08003 * 120.00003 * 93.76056 * 11 9 8 13 13 C 1.37877 * 120.00229 * 273.76002 * 11 9 8 14 14 N 1.31520 * 119.99972 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00133 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47203 * 60.00292 * 15 13 11 17 17 H 1.48504 * 109.46947 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47333 * 299.99897 * 15 13 11 19 19 C 1.47070 * 136.05723 * 174.97794 * 7 5 4 20 20 C 1.53781 * 113.61399 * 284.52792 * 4 3 2 21 21 C 1.53954 * 87.01899 * 220.05055 * 20 4 3 22 22 C 1.53784 * 113.60889 * 186.92232 * 4 3 2 23 23 H 1.08003 * 120.00516 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.00023 * 359.72813 * 1 2 3 25 25 H 1.08000 * 119.99593 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46935 * 241.13967 * 3 2 1 27 27 H 1.09000 * 109.47006 * 1.14236 * 3 2 1 28 28 H 1.08997 * 113.46173 * 321.94082 * 8 7 5 29 29 H 1.08999 * 113.46855 * 92.37340 * 8 7 5 30 30 H 0.96697 * 114.00224 * 86.39220 * 10 9 8 31 31 H 0.96997 * 120.00420 * 179.97438 * 14 13 11 32 32 H 1.08996 * 113.47037 * 267.62284 * 19 7 5 33 33 H 1.09007 * 113.46512 * 38.06494 * 19 7 5 34 34 H 1.08998 * 113.61726 * 334.57518 * 20 4 3 35 35 H 1.09009 * 113.61001 * 105.47486 * 20 4 3 36 36 H 1.09003 * 113.53847 * 270.81264 * 21 20 4 37 37 H 1.09003 * 113.66180 * 139.93524 * 21 20 4 38 38 H 1.08998 * 113.61241 * 254.52679 * 22 4 3 39 39 H 1.08996 * 113.61734 * 25.35683 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9646 1.3736 1.2347 5 6 3.9078 0.2028 1.3365 6 8 3.7846 -0.5986 2.2384 7 7 4.8884 0.0463 0.4252 8 6 5.2923 0.7143 -0.8212 9 6 5.9090 -0.6138 -1.2728 10 8 4.9948 -1.4796 -1.9486 11 6 7.2343 -0.4754 -1.9765 12 1 8.1543 -0.5596 -1.4170 13 6 7.2725 -0.2412 -3.3347 14 7 6.1523 -0.1392 -4.0162 15 14 8.9153 -0.0689 -4.2070 16 1 9.6999 -1.3181 -4.0362 17 1 8.6845 0.1761 -5.6534 18 1 9.6675 1.0716 -3.6251 19 6 6.0216 -0.8719 0.2362 20 6 2.2025 1.6659 2.5380 21 6 3.3781 2.5812 2.9258 22 6 3.6521 2.7366 1.4205 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0044 25 1 1.8499 -0.9353 0.0004 26 1 2.6747 1.3716 -0.9000 27 1 1.3554 2.1335 0.0205 28 1 4.4501 1.0315 -1.4362 29 1 6.0270 1.5054 -0.6713 30 1 4.9262 -1.3145 -2.8989 31 1 6.1791 0.0259 -4.9717 32 1 6.9526 -0.5077 0.6705 33 1 5.7983 -1.9009 0.5184 34 1 1.2649 2.2005 2.3852 35 1 2.0939 0.7953 3.1849 36 1 4.1733 2.0643 3.4632 37 1 3.0700 3.5071 3.4114 38 1 4.7120 2.7292 1.1666 39 1 3.1123 3.5643 0.9604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618914756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:33 Heat of formation + Delta-G solvation = -10.804493 kcal Electronic energy + Delta-G solvation = -21138.448122 eV Core-core repulsion = 18048.587403 eV Total energy + Delta-G solvation = -3089.860719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47429 -38.55694 -36.50689 -34.23443 -33.97424 -32.19815 -29.35715 -28.02084 -25.67264 -25.37071 -25.00679 -23.35652 -21.25843 -19.52737 -19.30174 -17.85240 -17.16800 -16.04096 -15.72162 -15.47308 -15.11622 -14.60269 -14.31899 -14.07275 -13.81146 -13.24279 -13.04538 -12.78533 -12.35243 -12.24877 -12.05786 -11.92329 -11.56637 -11.36404 -11.08533 -11.03931 -10.88122 -10.72444 -10.49053 -10.38067 -10.24709 -10.01424 -9.54904 -9.12034 -9.01617 -8.77725 -8.36797 -7.81971 -6.41318 -4.51751 2.53158 3.14818 3.20532 3.21028 3.23682 3.55301 4.16841 4.61517 4.68968 4.80380 4.87091 4.94289 5.19396 5.27650 5.45643 5.59868 5.62290 5.76225 5.79617 5.83288 5.95257 6.00850 6.02243 6.13494 6.18296 6.25118 6.36388 6.41890 6.45998 6.53785 6.71674 6.72817 6.89035 7.01537 7.10889 7.61739 7.79864 8.50355 8.55766 8.81928 9.19694 9.48909 10.65182 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.005860 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.392492 B = 4776.648969 C = 5091.932787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.092 4.092 5 C 0.563 3.437 6 O -0.561 6.561 7 N -0.630 5.630 8 C 0.074 3.926 9 C 0.241 3.759 10 O -0.571 6.571 11 C -0.534 4.534 12 H 0.071 0.929 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.105 3.895 20 C -0.116 4.116 21 C -0.141 4.141 22 C -0.125 4.125 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.274 0.726 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 6.540 5.476 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.151 4.151 3 C -0.113 4.113 4 C -0.095 4.095 5 C 0.352 3.648 6 O -0.441 6.441 7 N -0.363 5.363 8 C -0.049 4.049 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.572 4.572 12 H 0.090 0.910 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.017 4.017 20 C -0.154 4.154 21 C -0.179 4.179 22 C -0.163 4.163 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.250 0.750 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.252 5.937 6.496 10.795 hybrid contribution 0.884 0.417 -1.162 1.518 sum -5.367 6.354 5.334 9.881 Atomic orbital electron populations 1.23677 0.95675 1.01272 1.03642 1.22942 0.96015 0.98669 0.97471 1.20734 0.97640 0.95745 0.97189 1.21846 0.96228 0.94348 0.97107 1.19246 0.80207 0.85423 0.79922 1.90615 1.73146 1.45334 1.35025 1.49607 1.26933 1.35004 1.24737 1.24173 0.98102 1.00674 0.81961 1.19474 0.88060 0.85143 0.87440 1.86048 1.64428 1.59542 1.28376 1.21395 0.92085 1.50222 0.93521 0.91042 1.25070 0.97512 0.93147 0.97260 1.69255 1.26479 1.49006 1.09108 0.86377 0.82855 0.78972 0.78255 1.19838 1.20978 1.19885 1.23332 0.87441 0.93996 0.96954 1.22866 0.96850 1.00048 0.95588 1.22861 0.99045 0.99752 0.96219 1.22971 1.01238 0.95443 0.96650 0.88810 0.88964 0.87314 0.89814 0.90898 0.91658 0.90365 0.75026 0.91525 0.89811 0.91662 0.89805 0.90123 0.90253 0.91351 0.90947 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.80 14.32 29.02 0.42 -2.39 16 2 C -0.13 -2.15 8.85 -36.03 -0.32 -2.47 16 3 C -0.08 -1.15 5.07 -27.88 -0.14 -1.29 16 4 C -0.09 -1.47 0.64 -154.85 -0.10 -1.57 16 5 C 0.56 11.43 5.76 -10.99 -0.06 11.36 16 6 O -0.56 -13.06 16.73 5.56 0.09 -12.96 16 7 N -0.63 -13.21 3.69 -185.37 -0.68 -13.89 16 8 C 0.07 1.55 7.62 -8.64 -0.07 1.49 16 9 C 0.24 5.70 1.57 -91.40 -0.14 5.55 16 10 O -0.57 -14.61 13.53 -35.23 -0.48 -15.09 16 11 C -0.53 -13.17 8.69 -34.44 -0.30 -13.47 16 12 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 13 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 14 N -0.90 -22.39 11.01 55.43 0.61 -21.78 16 15 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 C 0.11 2.30 8.04 -8.50 -0.07 2.23 16 20 C -0.12 -1.63 6.99 -25.83 -0.18 -1.81 16 21 C -0.14 -1.84 7.81 -25.82 -0.20 -2.04 16 22 C -0.13 -1.71 7.23 -25.91 -0.19 -1.89 16 23 H 0.09 1.19 8.06 -52.48 -0.42 0.77 16 24 H 0.09 1.08 7.83 -52.48 -0.41 0.67 16 25 H 0.11 2.08 7.74 -52.49 -0.41 1.67 16 26 H 0.08 1.38 6.12 -51.93 -0.32 1.06 16 27 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 28 H 0.07 1.37 6.28 -51.93 -0.33 1.05 16 29 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 30 H 0.39 10.18 6.33 45.56 0.29 10.46 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 33 H 0.06 1.48 8.14 -51.92 -0.42 1.05 16 34 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.08 1.29 7.34 -51.92 -0.38 0.91 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -27.40 322.22 -7.36 -34.76 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.29 Total: 14.60 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.45 Total: -4.62 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.07 Total: -35.67 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.38 Total: -28.05 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.40 -7.36 -34.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618914756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.954 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds