Wall clock time and date at job start Mon Mar 30 2020 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34516 * 125.78815 * 2 1 4 4 C 1.41383 * 106.84153 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.84057 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.79014 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47139 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.46636 * 240.00153 * 6 5 4 9 9 C 1.50696 * 109.47490 * 119.99974 * 6 5 4 10 10 O 1.21287 * 119.99868 * 359.97438 * 9 6 5 11 11 N 1.34771 * 120.00122 * 179.97438 * 9 6 5 12 12 C 1.46505 * 120.00035 * 359.97438 * 11 9 6 13 13 C 1.46506 * 120.00092 * 179.97438 * 11 9 6 14 14 H 1.08996 * 109.46660 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.47289 * 239.99940 * 13 11 9 16 16 C 1.50699 * 109.46928 * 120.00010 * 13 11 9 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99500 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00390 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46755 * 90.00226 * 20 18 16 22 22 H 1.48498 * 109.46866 * 210.00212 * 20 18 16 23 23 H 1.48496 * 109.47178 * 330.00276 * 20 18 16 24 24 O 1.34299 * 108.41905 * 0.26032 * 5 4 3 25 25 H 1.09001 * 109.47502 * 89.99707 * 1 2 3 26 26 H 1.09004 * 109.46836 * 210.00109 * 1 2 3 27 27 H 1.08995 * 109.47505 * 329.99500 * 1 2 3 28 28 H 1.08002 * 126.58044 * 0.02562 * 3 2 1 29 29 H 1.07993 * 126.57934 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47249 * 299.99372 * 8 6 5 31 31 H 1.08992 * 109.47567 * 59.99740 * 8 6 5 32 32 H 1.09010 * 109.46880 * 180.02562 * 8 6 5 33 33 H 1.08999 * 109.46723 * 270.00200 * 12 11 9 34 34 H 1.08997 * 109.46979 * 29.99903 * 12 11 9 35 35 H 1.09005 * 109.46961 * 150.00254 * 12 11 9 36 36 H 1.09002 * 109.47153 * 179.97438 * 15 13 11 37 37 H 1.09001 * 109.46832 * 60.00146 * 15 13 11 38 38 H 1.09004 * 109.47261 * 300.00128 * 15 13 11 39 39 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 1 5.6885 -1.0500 -0.0017 8 6 4.7302 -2.5193 -1.2518 9 6 4.7304 -2.5078 1.2280 10 8 3.8254 -2.3876 2.0265 11 7 5.7001 -3.4193 1.4405 12 6 6.7930 -3.5648 0.4757 13 6 5.6614 -4.2647 2.6364 14 1 4.7820 -4.0144 3.2299 15 6 6.9232 -4.0288 3.4689 16 6 5.5940 -5.7130 2.2257 17 1 5.5818 -5.9774 1.1786 18 6 5.5481 -6.7007 3.1866 19 7 5.5625 -6.3787 4.4616 20 14 5.4639 -8.4961 2.6775 21 1 6.8402 -9.0372 2.5423 22 1 4.7272 -9.2691 3.7094 23 1 4.7575 -8.6090 1.3762 24 8 2.2925 -1.0893 -0.0073 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.9665 2.1205 0.0004 29 1 4.5211 1.2434 -0.0004 30 1 3.8123 -3.1071 -1.2523 31 1 4.7593 -1.8901 -2.1413 32 1 5.5902 -3.1892 -1.2518 33 1 6.5168 -4.3027 -0.2774 34 1 6.9814 -2.6059 -0.0071 35 1 7.6937 -3.8940 0.9939 36 1 6.8941 -4.6574 4.3589 37 1 6.9719 -2.9812 3.7659 38 1 7.8023 -4.2793 2.8751 39 1 5.5305 -7.0736 5.1377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742639239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:59 Heat of formation + Delta-G solvation = -42.077796 kcal Electronic energy + Delta-G solvation = -20619.935194 eV Core-core repulsion = 17528.718363 eV Total energy + Delta-G solvation = -3091.216831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53765 -40.87111 -37.19116 -35.67866 -34.46043 -34.04686 -32.18363 -30.86390 -27.93656 -27.33546 -27.15218 -25.14638 -22.89745 -22.63767 -21.13198 -20.01561 -18.56027 -17.91665 -17.65115 -16.96737 -16.90210 -16.26620 -15.98039 -15.24785 -14.99494 -14.70181 -14.34404 -13.98007 -13.90148 -13.75136 -13.65633 -13.44505 -13.26325 -13.03826 -12.98336 -12.80315 -12.74943 -12.66838 -12.46331 -12.25146 -12.16033 -12.02420 -11.17069 -10.79069 -10.63325 -10.46764 -9.34471 -9.16882 -8.15168 -6.31995 0.78119 1.40108 1.42254 1.51864 1.68573 1.74544 2.06106 2.33111 2.49854 3.12673 3.51863 3.70643 3.96415 4.04437 4.16628 4.21728 4.46147 4.55721 4.67160 4.68820 4.69974 4.78567 4.83446 4.85502 4.88018 4.92525 5.01726 5.05425 5.09141 5.23561 5.31969 5.46176 5.61682 5.66400 5.71772 6.03192 6.15321 6.31952 6.75977 6.79883 7.30076 7.46050 8.89263 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.005004 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.478229 B = 5594.156923 C = 5863.672184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.220 4.220 4 C -0.209 4.209 5 C -0.011 4.011 6 C -0.021 4.021 7 H 0.157 0.843 8 C -0.148 4.148 9 C 0.495 3.505 10 O -0.601 6.601 11 N -0.596 5.596 12 C 0.075 3.925 13 C 0.260 3.740 14 H 0.002 0.998 15 C -0.132 4.132 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.272 1.272 24 O -0.193 6.193 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.175 0.825 29 H 0.173 0.827 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.052 0.948 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 12.521 -13.586 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.239 4.239 4 C -0.228 4.228 5 C -0.061 4.061 6 C -0.041 4.041 7 H 0.174 0.826 8 C -0.205 4.205 9 C 0.283 3.717 10 O -0.483 6.483 11 N -0.326 5.326 12 C -0.067 4.067 13 C 0.158 3.842 14 H 0.020 0.980 15 C -0.190 4.190 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.196 1.196 24 O -0.091 6.091 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.192 0.808 29 H 0.190 0.810 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.071 12.175 -12.996 17.840 hybrid contribution -0.205 -1.022 0.543 1.175 sum -1.276 11.153 -12.453 16.766 Atomic orbital electron populations 1.20451 0.83049 1.04624 1.04644 1.23300 0.95750 0.84152 1.05643 1.21868 0.92256 1.00195 1.09573 1.21881 0.99624 0.92893 1.08395 1.22002 0.82777 0.94588 1.06761 1.20012 0.95093 0.94953 0.94082 0.82586 1.22049 1.03592 0.99831 0.95035 1.21208 0.81517 0.81295 0.87662 1.90646 1.37166 1.71039 1.49482 1.48180 1.24702 1.35304 1.24407 1.22088 0.89527 1.02909 0.92135 1.18538 0.94470 0.88588 0.82567 0.97954 1.21872 0.97911 0.97794 1.01460 1.21569 1.51411 0.91197 0.93329 0.92033 1.25761 0.94449 1.03614 0.94775 1.70035 1.50668 1.34452 1.00648 0.85438 0.78615 0.79095 0.77754 1.18957 1.21289 1.19641 1.83973 1.17228 1.36546 1.71314 0.88289 0.91632 0.87165 0.80803 0.80961 0.94478 0.88406 0.88400 0.91853 0.88064 0.90851 0.91498 0.96163 0.92886 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.42 71.23 0.74 -0.71 16 2 C -0.04 -1.14 7.32 24.83 0.18 -0.96 16 3 C -0.22 -5.76 10.81 22.19 0.24 -5.52 16 4 C -0.21 -5.81 10.78 22.19 0.24 -5.57 16 5 C -0.01 -0.37 5.19 24.83 0.13 -0.24 16 6 C -0.02 -0.63 2.33 -12.29 -0.03 -0.65 16 7 H 0.16 3.41 7.36 -2.39 -0.02 3.39 16 8 C -0.15 -3.70 8.81 71.98 0.63 -3.07 16 9 C 0.49 21.54 7.07 87.66 0.62 22.16 16 10 O -0.60 -33.24 15.14 3.10 0.05 -33.19 16 11 N -0.60 -25.50 2.75 -826.79 -2.28 -27.77 16 12 C 0.08 2.24 8.04 127.77 1.03 3.27 16 13 C 0.26 13.90 2.63 44.24 0.12 14.02 16 14 H 0.00 0.16 6.90 -2.39 -0.02 0.14 16 15 C -0.13 -6.43 8.95 71.98 0.64 -5.79 16 16 C -0.54 -29.63 8.37 25.60 0.21 -29.42 16 17 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 20 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 O -0.19 -7.31 10.36 3.69 0.04 -7.27 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 2.13 4.53 -2.38 -0.01 2.12 16 33 H 0.06 1.79 6.95 -2.39 -0.02 1.77 16 34 H 0.10 2.06 6.01 -2.39 -0.01 2.05 16 35 H 0.07 2.21 6.43 -2.38 -0.02 2.20 16 36 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 2.30 6.66 -2.38 -0.02 2.28 16 39 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -78.11 318.29 6.33 -71.78 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.04 Total: 15.86 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 5.21 Total: -11.28 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.03 Total: -81.50 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: 0.09 Total: -40.47 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -78.11 6.33 -71.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742639239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.700 kcal (2) G-P(sol) polarization free energy of solvation -78.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds