Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.34629 * 125.89814 * 265.02339 * 4 3 2 6 6 H 0.96999 * 124.80316 * 359.96765 * 5 4 3 7 7 C 1.36425 * 110.37980 * 179.97438 * 5 4 3 8 8 C 1.34434 * 109.08977 * 359.97438 * 7 5 4 9 9 C 1.37845 * 125.89334 * 84.71253 * 4 3 2 10 10 C 1.47112 * 127.02559 * 0.02562 * 9 4 3 11 11 O 1.21552 * 119.99780 * 0.02562 * 10 9 4 12 12 O 1.34785 * 119.99947 * 179.97438 * 10 9 4 13 13 C 1.45195 * 116.99935 * 179.97438 * 12 10 9 14 14 H 1.09008 * 109.47035 * 30.01038 * 13 12 10 15 15 C 1.50704 * 109.46993 * 150.00404 * 13 12 10 16 16 H 1.08001 * 120.00124 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99849 * 180.02562 * 15 13 12 18 18 N 1.31515 * 120.00379 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99845 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47194 * 59.99926 * 19 17 15 21 21 H 1.48494 * 109.47445 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47425 * 300.00246 * 19 17 15 23 23 C 1.52996 * 109.47633 * 270.00536 * 13 12 10 24 24 C 1.53004 * 109.46894 * 65.00171 * 23 13 12 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.08002 * 125.45618 * 180.02562 * 7 5 4 33 33 H 1.07992 * 126.81599 * 180.02562 * 8 7 5 34 34 H 0.96997 * 119.99857 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.47443 * 184.99718 * 23 13 12 36 36 H 1.09005 * 109.47189 * 304.99973 * 23 13 12 37 37 H 1.09000 * 109.46705 * 299.99998 * 24 23 13 38 38 H 1.08993 * 109.47430 * 60.00315 * 24 23 13 39 39 H 1.09003 * 109.47047 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3360 1.5371 1.0874 6 1 4.0150 1.6171 1.9993 7 6 5.6506 1.5048 0.7244 8 6 5.7349 1.3872 -0.6121 9 6 4.3556 1.3393 -1.1109 10 6 3.9241 1.2100 -2.5114 11 8 2.7395 1.1860 -2.7825 12 8 4.8424 1.1193 -3.4939 13 6 4.3444 0.9934 -4.8520 14 1 3.3837 1.5016 -4.9353 15 6 5.3278 1.6186 -5.8076 16 1 6.2364 2.0654 -5.4318 17 6 5.0676 1.6201 -7.1615 18 7 3.9610 1.0764 -7.6191 19 14 6.2869 2.3944 -8.3461 20 1 7.5954 1.7012 -8.2330 21 1 5.7777 2.2657 -9.7350 22 1 6.4575 3.8312 -8.0120 23 6 4.1698 -0.4871 -5.1960 24 6 3.0806 -1.0920 -4.3079 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4894 1.5633 1.4023 33 1 6.6383 1.3347 -1.2015 34 1 3.7778 1.0778 -8.5716 35 1 3.8813 -0.5854 -6.2426 36 1 5.1097 -1.0127 -5.0273 37 1 3.3691 -0.9938 -3.2614 38 1 2.1407 -0.5666 -4.4766 39 1 2.9565 -2.1469 -4.5527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817729278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = -87.008861 kcal Electronic energy + Delta-G solvation = -20571.618437 eV Core-core repulsion = 17478.453249 eV Total energy + Delta-G solvation = -3093.165188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18843 -40.69682 -37.40928 -35.85777 -35.35860 -33.35946 -32.02685 -30.85649 -29.29662 -27.13617 -25.42812 -24.14245 -22.53668 -21.94573 -21.47482 -20.35607 -18.75353 -18.59568 -17.72578 -16.87800 -16.71419 -16.15171 -15.86708 -15.37108 -14.89236 -14.83261 -14.67675 -14.07649 -13.94518 -13.68931 -13.66179 -13.31683 -13.18734 -13.06522 -12.76712 -12.68909 -12.51335 -12.25794 -12.12785 -12.10019 -11.73079 -11.56911 -11.38232 -11.08989 -10.76165 -10.48838 -9.81791 -9.14549 -8.24988 -6.41698 0.59971 1.41261 1.45668 1.52378 1.53717 2.06172 2.35957 2.46083 2.65558 3.04108 3.75982 4.02780 4.14896 4.17467 4.35443 4.38213 4.40717 4.42314 4.56571 4.59447 4.70292 4.83649 4.87940 4.95671 5.04270 5.06767 5.13249 5.23804 5.26131 5.36651 5.41979 5.45510 5.55288 5.70487 5.74377 5.97133 6.03150 6.23925 6.63500 6.68922 7.18165 7.35801 8.81951 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.005440 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.746207 B = 5146.163089 C = 5937.018855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.056 4.056 4 C 0.117 3.883 5 N -0.526 5.526 6 H 0.439 0.561 7 C 0.007 3.993 8 C -0.182 4.182 9 C -0.262 4.262 10 C 0.516 3.484 11 O -0.549 6.549 12 O -0.366 6.366 13 C 0.227 3.773 14 H 0.004 0.996 15 C -0.551 4.551 16 H 0.062 0.938 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.270 1.270 23 C -0.127 4.127 24 C -0.125 4.125 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.141 0.859 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -0.779 20.233 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.094 4.094 4 C -0.003 4.003 5 N -0.123 5.123 6 H 0.280 0.720 7 C -0.120 4.120 8 C -0.205 4.205 9 C -0.271 4.271 10 C 0.365 3.635 11 O -0.442 6.442 12 O -0.283 6.283 13 C 0.174 3.826 14 H 0.022 0.978 15 C -0.589 4.589 16 H 0.080 0.920 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.165 4.165 24 C -0.182 4.182 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.246 -0.817 20.091 20.146 hybrid contribution 0.249 0.340 -1.006 1.090 sum -0.997 -0.478 19.085 19.117 Atomic orbital electron populations 1.21715 0.94217 1.02234 1.02147 1.21364 0.96967 0.94962 1.01441 1.20400 0.85679 0.99006 1.04320 1.20598 0.93847 1.00254 0.85604 1.41468 1.05744 1.56222 1.08842 0.71979 1.22254 0.86554 1.07712 0.95484 1.22264 0.95114 1.07866 0.95259 1.19800 0.95992 1.22534 0.88737 1.20769 0.83868 0.72111 0.86773 1.90702 1.19011 1.49496 1.85027 1.86526 1.40446 1.82519 1.18780 1.20286 0.94361 0.94117 0.73834 0.97808 1.21309 1.06611 1.39144 0.91787 0.92024 1.25805 0.97714 0.95384 0.99275 1.70013 1.25798 1.44369 1.15106 0.85267 0.78552 0.78862 0.76913 1.18890 1.19943 1.19460 1.21839 0.97085 0.95733 1.01869 1.21661 0.98443 0.99752 0.98342 0.94052 0.92073 0.90476 0.94818 0.90462 0.87419 0.91034 0.76509 0.84131 0.92028 0.89524 0.94080 0.94807 0.94444 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 3 C -0.06 -1.38 5.08 29.85 0.15 -1.23 16 4 C 0.12 3.22 6.47 42.04 0.27 3.49 16 5 N -0.53 -9.25 5.89 -182.01 -1.07 -10.33 16 6 H 0.44 3.55 8.96 -92.71 -0.83 2.72 16 7 C 0.01 0.14 11.87 83.11 0.99 1.12 16 8 C -0.18 -5.57 11.00 23.63 0.26 -5.31 16 9 C -0.26 -9.82 6.33 -18.82 -0.12 -9.94 16 10 C 0.52 24.88 6.40 70.15 0.45 25.33 16 11 O -0.55 -27.83 12.03 19.67 0.24 -27.60 16 12 O -0.37 -19.82 9.71 -56.96 -0.55 -20.38 16 13 C 0.23 13.36 2.25 29.85 0.07 13.43 16 14 H 0.00 0.27 7.16 -2.38 -0.02 0.25 16 15 C -0.55 -33.22 8.90 25.60 0.23 -32.99 16 16 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 17 C 0.02 1.02 5.29 84.65 0.45 1.47 16 18 N -0.91 -54.37 11.30 21.45 0.24 -54.13 16 19 Si 0.98 44.59 29.54 68.60 2.03 46.61 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C -0.13 -6.89 5.49 30.59 0.17 -6.72 16 24 C -0.12 -5.93 8.57 71.98 0.62 -5.31 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.29 6.81 -2.39 -0.02 2.28 16 32 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.09 5.03 5.96 -2.39 -0.01 5.02 16 36 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.03 1.58 6.06 -2.39 -0.01 1.56 16 38 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.06 323.20 5.51 -70.54 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.21 Total: 16.66 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.42 Total: -21.38 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.83 Total: -64.46 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.32 Total: -47.97 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -76.06 5.51 -70.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817729278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.468 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds