Wall clock time and date at job start Mon Mar 30 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.47098 * 120.00010 * 2 1 4 4 O 1.21613 * 119.99454 * 80.55047 * 3 2 1 5 5 N 1.34771 * 120.00319 * 260.54774 * 3 2 1 6 6 C 1.47027 * 125.64683 * 354.71067 * 5 3 2 7 7 C 1.54320 * 107.26936 * 179.20750 * 6 5 3 8 8 C 1.55162 * 102.94491 * 337.80802 * 7 6 5 9 9 O 1.42903 * 111.00558 * 277.43106 * 8 7 6 10 10 C 1.50695 * 111.03912 * 153.59116 * 8 7 6 11 11 H 1.07998 * 120.00146 * 247.79012 * 10 8 7 12 12 C 1.37878 * 119.99955 * 67.78385 * 10 8 7 13 13 N 1.31513 * 119.99981 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99966 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47298 * 90.00062 * 14 12 10 16 16 H 1.48497 * 109.47043 * 210.00384 * 14 12 10 17 17 H 1.48506 * 109.47179 * 330.00107 * 14 12 10 18 18 C 1.47427 * 125.64721 * 175.02590 * 5 3 2 19 19 C 1.32991 * 119.99792 * 180.02562 * 2 1 3 20 20 C 1.51411 * 136.31546 * 179.63165 * 19 2 1 21 21 C 1.53372 * 87.51858 * 206.05139 * 20 19 2 22 22 C 1.51411 * 136.32034 * 359.97438 * 19 2 1 23 23 H 1.08998 * 109.46844 * 95.08569 * 1 2 3 24 24 H 1.09003 * 109.47125 * 215.08034 * 1 2 3 25 25 H 1.08998 * 109.46840 * 335.07955 * 1 2 3 26 26 H 1.08988 * 109.88241 * 298.62585 * 6 5 3 27 27 H 1.09000 * 109.87580 * 59.79264 * 6 5 3 28 28 H 1.09005 * 110.72164 * 219.44749 * 7 6 5 29 29 H 1.08997 * 110.72283 * 96.16857 * 7 6 5 30 30 H 0.96702 * 113.99318 * 292.19672 * 9 8 7 31 31 H 0.97001 * 119.99675 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.36353 * 322.69464 * 18 5 3 33 33 H 1.08991 * 110.36974 * 85.02557 * 18 5 3 34 34 H 1.08995 * 113.55576 * 320.63493 * 20 19 2 35 35 H 1.09001 * 113.56157 * 91.36604 * 20 19 2 36 36 H 1.09003 * 113.97212 * 220.29137 * 21 20 19 37 37 H 1.09002 * 113.71050 * 88.80677 * 21 20 19 38 38 H 1.08999 * 113.55983 * 268.63483 * 22 19 2 39 39 H 1.08997 * 113.55552 * 39.28893 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3968 1.8869 1.0390 5 7 2.7455 1.7617 -1.1513 6 6 2.7288 1.0764 -2.4520 7 6 3.3943 2.0203 -3.4756 8 6 3.2399 3.4152 -2.8138 9 8 1.9452 3.9631 -3.0697 10 6 4.3225 4.3560 -3.2761 11 1 5.0780 4.6929 -2.5817 12 6 4.3486 4.7868 -4.5856 13 7 3.4285 4.3769 -5.4311 14 14 5.6910 5.9525 -5.1587 15 1 6.8499 5.1675 -5.6545 16 1 5.1685 6.8090 -6.2535 17 1 6.1217 6.8079 -4.0237 18 6 3.4093 3.0680 -1.3136 19 6 2.1720 -1.1518 -0.0005 20 6 3.6251 -1.5772 -0.0074 21 6 3.1708 -2.8815 -0.6742 22 6 1.8138 -2.6229 -0.0007 23 1 -0.3633 -0.0911 -1.0236 24 1 -0.3633 -0.8410 0.5906 25 1 -0.3633 0.9320 0.4330 26 1 3.2904 0.1446 -2.3872 27 1 1.7005 0.8721 -2.7500 28 1 2.8690 1.9861 -4.4301 29 1 4.4471 1.7690 -3.6044 30 1 1.7928 4.1959 -3.9959 31 1 3.4466 4.6803 -6.3522 32 1 2.9228 3.8204 -0.6929 33 1 4.4663 2.9907 -1.0591 34 1 4.2566 -0.9600 -0.6464 35 1 4.0421 -1.7197 0.9895 36 1 3.6835 -3.7697 -0.3047 37 1 3.1395 -2.8296 -1.7626 38 1 1.7343 -3.0521 0.9981 39 1 0.9592 -2.8631 -0.6331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:38 Heat of formation + Delta-G solvation = -50.271949 kcal Electronic energy + Delta-G solvation = -20796.457740 eV Core-core repulsion = 17704.885584 eV Total energy + Delta-G solvation = -3091.572156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78637 -38.39999 -37.11726 -34.27102 -32.88012 -32.15362 -29.73046 -28.33476 -26.64481 -25.53774 -25.18431 -23.12030 -21.73111 -19.93350 -19.37605 -17.68080 -17.11940 -16.22960 -15.56183 -15.44846 -15.09574 -14.98629 -14.20611 -14.01671 -13.32130 -13.19524 -12.93336 -12.62433 -12.48213 -12.17650 -12.05483 -11.78825 -11.69784 -11.62185 -11.34683 -11.32015 -10.96552 -10.87347 -10.62271 -10.50657 -10.37880 -10.05431 -9.49073 -9.29190 -8.70306 -8.66472 -8.22154 -7.96503 -6.31767 -4.39431 1.88954 3.05294 3.18216 3.26057 3.30293 3.62289 4.24731 4.40343 4.54065 4.66582 4.94159 5.04595 5.12722 5.38018 5.53464 5.56963 5.58532 5.69211 5.70594 5.73187 5.81251 5.85208 5.92800 6.01789 6.05954 6.17034 6.22460 6.38571 6.44609 6.65968 6.84205 6.88773 6.98238 7.28506 7.31308 7.71840 7.97460 8.14875 8.61296 8.66103 9.29658 9.46461 10.76013 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.005117 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.533577 B = 5471.110407 C = 5705.649142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.124 4.124 3 C 0.570 3.430 4 O -0.553 6.553 5 N -0.599 5.599 6 C 0.105 3.895 7 C -0.139 4.139 8 C 0.250 3.750 9 O -0.584 6.584 10 C -0.535 4.535 11 H 0.066 0.934 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.119 3.881 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.097 4.097 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.385 0.615 31 H 0.269 0.731 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -13.045 4.352 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.358 3.642 4 O -0.432 6.432 5 N -0.331 5.331 6 C -0.018 4.018 7 C -0.178 4.178 8 C 0.209 3.791 9 O -0.394 6.394 10 C -0.573 4.573 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.003 4.003 19 C -0.132 4.132 20 C -0.145 4.145 21 C -0.173 4.173 22 C -0.134 4.134 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.612 -12.820 5.405 14.156 hybrid contribution 0.801 0.654 -1.130 1.532 sum -1.810 -12.167 4.275 13.022 Atomic orbital electron populations 1.20536 0.89543 1.02918 1.02311 1.20481 0.96352 0.91234 1.04598 1.17928 0.78631 0.84938 0.82675 1.90763 1.60403 1.60817 1.31260 1.48610 1.56471 1.19830 1.08164 1.22114 1.00318 0.95711 0.83677 1.23207 0.99965 0.96927 0.97689 1.19576 0.82850 0.89145 0.87544 1.86099 1.34612 1.84616 1.34120 1.21489 1.11665 1.28484 0.95708 0.91622 1.24989 0.96103 0.95656 0.96232 1.69563 1.34308 1.44668 1.05269 0.86393 0.81379 0.80623 0.78464 1.20450 1.20987 1.19642 1.22406 0.96114 0.82980 0.98794 1.22904 0.97431 0.93627 0.99189 1.22158 0.94094 0.96823 1.01431 1.22628 0.96744 0.97500 1.00405 1.22131 0.98145 0.91973 1.01173 0.90985 0.91350 0.91298 0.93033 0.92469 0.89884 0.91421 0.76246 0.92062 0.91127 0.91137 0.90772 0.88946 0.90786 0.89673 0.89006 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.96 36.01 0.36 -0.91 16 2 C -0.12 -1.98 4.94 -102.85 -0.51 -2.49 16 3 C 0.57 11.58 7.11 -12.67 -0.09 11.49 16 4 O -0.55 -13.06 17.41 5.27 0.09 -12.97 16 5 N -0.60 -12.37 3.33 -171.92 -0.57 -12.94 16 6 C 0.10 1.96 6.46 -3.06 -0.02 1.94 16 7 C -0.14 -2.99 5.64 -24.90 -0.14 -3.13 16 8 C 0.25 6.05 0.89 -89.62 -0.08 5.98 16 9 O -0.58 -15.07 13.18 -35.23 -0.46 -15.53 16 10 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 11 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 13 N -0.90 -22.98 10.79 55.43 0.60 -22.38 16 14 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 C 0.12 2.72 6.06 -2.52 -0.02 2.70 16 19 C -0.13 -1.77 6.64 -100.48 -0.67 -2.44 16 20 C -0.11 -1.33 7.83 -27.56 -0.22 -1.55 16 21 C -0.14 -1.30 8.17 -26.19 -0.21 -1.52 16 22 C -0.10 -0.97 7.81 -27.39 -0.21 -1.18 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 25 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.05 0.85 7.68 -51.94 -0.40 0.45 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.86 7.85 -51.93 -0.41 1.45 16 29 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.39 9.99 6.93 45.56 0.32 10.30 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.07 1.72 8.09 -51.93 -0.42 1.30 16 33 H 0.07 1.56 8.01 -51.93 -0.42 1.15 16 34 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -28.95 324.09 -8.15 -37.10 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.48 Total: 10.34 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.18 Total: -3.53 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.03 Total: -35.32 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.37 Total: -28.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.95 -8.15 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.172 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds