Wall clock time and date at job start Mon Mar 30 2020 00:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50699 * 109.46910 * 123.84206 * 3 2 1 5 5 O 1.20822 * 120.00288 * 120.00041 * 4 3 2 6 6 O 1.34233 * 119.99906 * 299.99831 * 4 3 2 7 7 C 1.45204 * 116.99847 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46817 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46686 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47187 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99883 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00373 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00122 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46884 * 60.00462 * 14 12 10 16 16 H 1.48502 * 109.47183 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47335 * 300.00098 * 14 12 10 18 18 C 1.52997 * 109.47168 * 3.84362 * 3 2 1 19 19 C 1.53002 * 109.47143 * 299.99913 * 18 3 2 20 20 C 1.53005 * 109.46982 * 300.00331 * 19 18 3 21 21 C 1.52997 * 109.47452 * 59.99858 * 20 19 18 22 22 C 1.52997 * 109.47080 * 243.84225 * 3 2 1 23 23 H 1.09002 * 109.47347 * 300.00264 * 7 6 4 24 24 H 1.09002 * 109.47079 * 60.00117 * 7 6 4 25 25 H 1.08992 * 109.47127 * 299.99387 * 8 7 6 26 26 H 1.08992 * 109.47325 * 60.00141 * 8 7 6 27 27 H 1.09002 * 109.47410 * 300.00089 * 9 8 7 28 28 H 1.09002 * 109.47147 * 60.00022 * 9 8 7 29 29 H 0.97000 * 120.00258 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.47261 * 59.99776 * 18 3 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 18 3 2 32 32 H 1.09000 * 109.47312 * 180.02562 * 19 18 3 33 33 H 1.09002 * 109.47067 * 59.99982 * 19 18 3 34 34 H 1.09002 * 109.46935 * 299.99733 * 20 19 18 35 35 H 1.08998 * 109.47061 * 180.02562 * 20 19 18 36 36 H 1.08992 * 109.47303 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 38 38 H 1.09002 * 109.47045 * 180.02562 * 22 3 2 39 39 H 1.09000 * 109.47140 * 299.99946 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1099 0.7921 -1.1801 5 8 3.8041 1.7652 -1.0038 6 8 2.7858 0.4161 -2.4272 7 6 3.3050 1.2250 -3.5156 8 6 2.8331 0.6464 -4.8510 9 6 3.3808 1.4984 -5.9978 10 6 2.9165 0.9283 -7.3133 11 1 2.2928 0.0467 -7.3297 12 6 3.2871 1.5326 -8.4958 13 7 4.0461 2.6064 -8.4759 14 14 2.7121 0.8254 -10.1265 15 1 1.2279 0.8288 -10.1716 16 1 3.2436 1.6524 -11.2396 17 1 3.2084 -0.5673 -10.2645 18 6 3.1186 -1.4383 -0.0967 19 6 2.6090 -2.2419 1.1014 20 6 3.1187 -1.6057 2.3962 21 6 2.6081 -0.1667 2.4929 22 6 3.1177 0.6368 1.2947 23 1 2.9411 2.2474 -3.4141 24 1 4.3945 1.2221 -3.4827 25 1 3.1967 -0.3760 -4.9528 26 1 1.7437 0.6496 -4.8837 27 1 3.0176 2.5211 -5.8963 28 1 4.4703 1.4948 -5.9650 29 1 4.3071 3.0315 -9.3078 30 1 2.7555 -1.8916 -1.0191 31 1 4.2086 -1.4378 -0.0972 32 1 2.9732 -3.2670 1.0328 33 1 1.5190 -2.2424 1.1014 34 1 4.2087 -1.6052 2.3962 35 1 2.7560 -2.1785 3.2497 36 1 2.9715 0.2866 3.4150 37 1 1.5180 -0.1673 2.4929 38 1 4.2077 0.6377 1.2945 39 1 2.7539 1.6620 1.3636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920673823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:38 Heat of formation + Delta-G solvation = -111.194660 kcal Electronic energy + Delta-G solvation = -19714.316306 eV Core-core repulsion = 16620.102342 eV Total energy + Delta-G solvation = -3094.213963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20908 -39.88650 -37.92944 -37.01899 -35.96939 -33.77874 -32.73986 -31.87689 -29.05639 -26.03205 -24.84253 -23.70670 -22.79165 -22.19646 -21.66433 -19.15694 -18.64350 -17.94136 -17.84251 -17.28310 -16.50993 -15.93739 -15.62554 -15.54410 -15.16477 -14.66159 -14.27622 -14.24871 -14.21115 -13.91536 -13.76242 -13.60684 -13.26350 -13.18302 -12.82928 -12.81549 -12.54702 -12.41765 -12.17813 -12.10523 -11.97279 -11.59566 -11.47558 -11.44015 -11.32446 -11.15365 -11.12141 -10.57152 -8.22368 -6.33784 0.74672 1.15649 1.41187 1.43964 1.47070 1.51942 1.78319 2.40786 2.52679 3.11538 3.27231 3.47893 3.55000 3.98285 4.01299 4.06734 4.12911 4.15109 4.37039 4.39597 4.48032 4.63533 4.78028 4.79000 4.82216 4.98822 5.04237 5.06097 5.13144 5.17976 5.28088 5.32941 5.36336 5.48204 5.50301 5.63210 5.79521 6.18014 6.20974 6.46191 6.81738 7.35690 8.89508 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038460 B = 0.003318 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.858345 B = 8436.635300 C = 8626.332251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.234 3.766 3 C 0.061 3.939 4 C 0.470 3.530 5 O -0.508 6.508 6 O -0.354 6.354 7 C 0.076 3.924 8 C -0.096 4.096 9 C 0.027 3.973 10 C -0.546 4.546 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.264 1.264 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.098 4.098 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.059 0.941 27 H -0.005 1.005 28 H 0.002 0.998 29 H 0.265 0.735 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -9.851 23.335 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.084 4.084 3 C 0.056 3.944 4 C 0.311 3.689 5 O -0.396 6.396 6 O -0.270 6.270 7 C 0.003 3.997 8 C -0.133 4.133 9 C -0.010 4.010 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.189 1.189 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.136 4.136 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.014 0.986 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.579 -9.415 23.228 25.070 hybrid contribution 0.099 0.463 -1.347 1.428 sum -0.480 -8.953 21.881 23.647 Atomic orbital electron populations 1.81231 1.13222 1.08749 1.08606 1.28493 0.94248 0.92884 0.92754 1.18496 0.82099 1.00520 0.93283 1.23465 0.77868 0.83048 0.84545 1.90690 1.36057 1.26441 1.86363 1.86501 1.69367 1.55610 1.15497 1.23252 0.99234 0.93656 0.83546 1.21471 1.00837 1.00491 0.90541 1.18924 0.95413 0.94349 0.92354 1.21599 1.31931 1.12756 0.92095 0.91852 1.25976 0.95060 0.95217 1.03475 1.70081 1.37261 1.21301 1.28561 0.85477 0.78834 0.78633 0.77982 1.19330 1.20839 1.18907 1.21835 1.03706 0.87780 1.01481 1.21619 1.00204 1.00330 0.93566 1.21625 1.02338 0.94568 0.97255 1.21631 1.00158 0.96375 0.97570 1.21687 1.03676 0.99306 0.88976 0.91945 0.90462 0.91011 0.92255 0.98618 0.97929 0.92635 0.89882 0.86813 0.88546 0.93327 0.89431 0.90278 0.88586 0.93350 0.87056 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.89 18.54 20.01 0.37 -12.52 16 2 C 0.23 5.73 11.27 89.44 1.01 6.74 16 3 C 0.06 1.18 0.66 -54.73 -0.04 1.15 16 4 C 0.47 12.75 6.52 71.24 0.46 13.22 16 5 O -0.51 -15.81 15.73 21.98 0.35 -15.46 16 6 O -0.35 -11.04 10.03 -51.45 -0.52 -11.56 16 7 C 0.08 2.70 5.47 71.98 0.39 3.10 16 8 C -0.10 -3.92 5.53 30.59 0.17 -3.75 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 11 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 14 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 C -0.11 -1.53 4.64 30.59 0.14 -1.38 16 19 C -0.12 -1.27 5.70 30.60 0.17 -1.09 16 20 C -0.12 -0.95 5.92 30.60 0.18 -0.77 16 21 C -0.12 -1.28 5.70 30.59 0.17 -1.10 16 22 C -0.10 -1.44 4.00 30.59 0.12 -1.32 16 23 H 0.06 2.28 8.13 -2.39 -0.02 2.27 16 24 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.08 1.30 8.11 -2.38 -0.02 1.28 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.68 7.23 -2.39 -0.02 0.66 16 34 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.67 7.23 -2.39 -0.02 0.65 16 38 H 0.11 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -68.20 327.76 7.17 -61.03 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.02 Total: 2.41 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.64 Total: -13.74 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: 0.66 Total: -68.62 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.17 Total: -27.02 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.20 7.17 -61.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920673823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.167 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds