Wall clock time and date at job start Mon Mar 30 2020 00:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 117.00254 * 2 1 4 4 C 1.38778 * 120.02725 * 0.27719 * 3 2 1 5 5 C 1.38173 * 120.05170 * 180.27326 * 4 3 2 6 6 C 1.50708 * 119.94399 * 179.69955 * 5 4 3 7 7 C 1.38179 * 120.11392 * 359.72447 * 5 4 3 8 8 C 1.38772 * 120.05205 * 359.97438 * 7 5 4 9 9 O 1.35891 * 120.02637 * 180.02562 * 8 7 5 10 10 C 1.42905 * 116.99959 * 359.97438 * 9 8 7 11 11 C 1.38633 * 119.94582 * 0.02562 * 8 7 5 12 12 C 1.50697 * 120.05593 * 180.02562 * 11 8 7 13 13 N 1.46494 * 109.47269 * 89.99246 * 12 11 8 14 14 C 1.46500 * 120.00085 * 90.00290 * 13 12 11 15 15 C 1.36943 * 120.00274 * 270.00193 * 13 12 11 16 16 H 1.07994 * 119.99891 * 22.10373 * 15 13 12 17 17 C 1.38809 * 119.99908 * 202.10600 * 15 13 12 18 18 N 1.31619 * 120.00251 * 12.58294 * 17 15 13 19 19 Si 1.86800 * 119.99825 * 192.58540 * 17 15 13 20 20 H 1.48492 * 109.47435 * 84.79528 * 19 17 15 21 21 H 1.48504 * 109.47130 * 204.79609 * 19 17 15 22 22 H 1.48506 * 109.46970 * 324.79261 * 19 17 15 23 23 H 1.09006 * 109.47072 * 59.99825 * 1 2 3 24 24 H 1.08992 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46965 * 299.99786 * 1 2 3 26 26 H 1.07995 * 119.97406 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47137 * 270.02842 * 6 5 4 28 28 H 1.08998 * 109.46748 * 30.02131 * 6 5 4 29 29 H 1.08998 * 109.47310 * 150.02314 * 6 5 4 30 30 H 1.07998 * 119.97057 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.47011 * 60.00352 * 10 9 8 32 32 H 1.09001 * 109.46791 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46933 * 299.99903 * 10 9 8 34 34 H 1.09003 * 109.47001 * 329.99721 * 12 11 8 35 35 H 1.08999 * 109.47086 * 209.99984 * 12 11 8 36 36 H 1.09003 * 109.47475 * 94.43715 * 14 13 12 37 37 H 1.08997 * 109.47423 * 214.43401 * 14 13 12 38 38 H 1.09005 * 109.47146 * 334.43861 * 14 13 12 39 39 H 0.97002 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3751 0.0058 5 6 1.9175 3.6065 0.0001 6 6 1.0950 4.8693 -0.0004 7 6 3.2972 3.6821 -0.0056 8 6 4.0569 2.5207 -0.0052 9 8 5.4137 2.5957 -0.0103 10 6 5.9912 3.9028 -0.0166 11 6 3.4304 1.2840 0.0006 12 6 4.2529 0.0213 0.0017 13 7 4.5241 -0.3837 1.3832 14 6 3.5966 -1.2787 2.0796 15 6 5.6445 0.0743 2.0236 16 1 6.1297 0.9772 1.6837 17 6 6.1565 -0.6220 3.1098 18 7 5.7275 -1.8380 3.3735 19 14 7.4544 0.1669 4.1973 20 1 6.7931 1.0100 5.2253 21 1 8.2519 -0.8932 4.8648 22 1 8.3502 1.0109 3.3662 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2123 2.3186 0.0099 27 1 0.8925 5.1706 -1.0282 28 1 0.1530 4.6894 0.5177 29 1 1.6444 5.6610 0.5089 30 1 3.7847 4.6457 -0.0105 31 1 5.6713 4.4456 0.8728 32 1 7.0781 3.8198 -0.0198 33 1 5.6649 4.4399 -0.9072 34 1 5.1953 0.2011 -0.5158 35 1 3.7038 -0.7704 -0.5080 36 1 3.9387 -2.3084 1.9763 37 1 3.5591 -1.0126 3.1359 38 1 2.6019 -1.1810 1.6447 39 1 6.0856 -2.3248 4.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143143790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:08 Heat of formation + Delta-G solvation = -23.745124 kcal Electronic energy + Delta-G solvation = -21052.124570 eV Core-core repulsion = 17961.702703 eV Total energy + Delta-G solvation = -3090.421867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17650 -38.53516 -36.34587 -35.38502 -32.56896 -30.58033 -29.14326 -28.01142 -27.51887 -26.61507 -25.56890 -24.14097 -21.46973 -21.40759 -20.15204 -17.55726 -16.73646 -16.23284 -15.84094 -15.66478 -15.20233 -15.11286 -14.55090 -14.29569 -13.47734 -13.35203 -13.19918 -12.91275 -12.85973 -12.31005 -12.23915 -11.88528 -11.51529 -11.46697 -11.19834 -11.17462 -10.89069 -10.72757 -10.46720 -10.24246 -10.13501 -9.98905 -9.75071 -9.61008 -8.35227 -7.71311 -7.64696 -6.50816 -5.49708 -2.93630 1.79076 1.89531 3.36763 3.49517 3.54516 3.56333 4.08789 4.13943 4.70105 4.94375 5.18722 5.28390 5.34278 5.34779 5.36257 5.44417 5.45834 5.61954 5.62860 5.66480 5.76246 5.82197 5.82969 5.90959 6.03003 6.40144 6.46332 6.58192 6.81960 6.84661 7.07701 7.11840 7.14581 7.63842 7.80381 7.92868 7.97071 8.09054 8.63332 9.48103 10.11601 10.61322 11.55360 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.007761 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.870577 B = 3606.985821 C = 4673.126950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.168 3.832 4 C -0.249 4.249 5 C -0.031 4.031 6 C -0.109 4.109 7 C -0.248 4.248 8 C 0.178 3.822 9 O -0.293 6.293 10 C 0.030 3.970 11 C -0.148 4.148 12 C 0.201 3.799 13 N -0.590 5.590 14 C 0.163 3.837 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.914 5.914 19 Si 0.900 3.100 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.281 1.281 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.036 0.964 38 H 0.008 0.992 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 11.099 -8.604 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.122 3.878 4 C -0.268 4.268 5 C -0.031 4.031 6 C -0.166 4.166 7 C -0.267 4.267 8 C 0.131 3.869 9 O -0.205 6.205 10 C -0.066 4.066 11 C -0.153 4.153 12 C 0.074 3.926 13 N -0.312 5.312 14 C 0.019 3.981 15 C -0.367 4.367 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.731 3.269 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.207 1.207 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.026 0.974 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.207 10.592 -8.451 16.382 hybrid contribution 0.358 0.927 0.885 1.331 sum -8.849 11.519 -7.566 16.378 Atomic orbital electron populations 1.22974 0.79369 1.03434 1.00743 1.86160 1.20351 1.26640 1.88301 1.18392 0.91110 0.83810 0.94462 1.20841 0.99219 0.91837 1.14855 1.19221 0.92999 0.94252 0.96659 1.20736 0.99152 0.94807 1.01859 1.20887 0.94031 0.97164 1.14640 1.18392 0.82445 0.92609 0.93404 1.86234 1.17139 1.29314 1.87852 1.22986 0.99165 0.83861 1.00567 1.19670 0.91175 0.96744 1.07679 1.19392 0.95777 0.89689 0.87788 1.43905 1.23877 1.54808 1.08582 1.20803 0.88333 0.93658 0.95312 1.19408 1.02649 1.04557 1.10066 0.90657 1.24971 0.98983 0.95496 1.00864 1.70095 1.46064 1.10032 1.29874 0.86328 0.81503 0.78188 0.80913 1.21892 1.21956 1.20666 0.93231 0.88595 0.93028 0.86200 0.91433 0.91820 0.91789 0.86138 0.93019 0.88560 0.93345 0.92425 0.93434 0.95653 0.94566 0.97381 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.37 7.97 -19.41 -0.15 -5.53 16 3 C 0.17 3.15 6.66 -39.23 -0.26 2.89 16 4 C -0.25 -3.94 8.69 -39.41 -0.34 -4.28 16 5 C -0.03 -0.46 5.88 -104.66 -0.61 -1.08 16 6 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 7 C -0.25 -4.04 8.69 -39.41 -0.34 -4.39 16 8 C 0.18 3.46 6.66 -39.24 -0.26 3.20 16 9 O -0.29 -5.68 8.42 -19.40 -0.16 -5.84 16 10 C 0.03 0.41 9.81 101.05 0.99 1.40 16 11 C -0.15 -3.11 5.49 -104.33 -0.57 -3.68 16 12 C 0.20 4.71 5.33 -5.20 -0.03 4.69 16 13 N -0.59 -16.14 2.91 -182.51 -0.53 -16.67 16 14 C 0.16 4.41 8.97 59.85 0.54 4.94 16 15 C -0.24 -6.93 9.67 -15.06 -0.15 -7.08 16 16 H 0.08 2.18 6.71 -52.49 -0.35 1.82 16 17 C -0.01 -0.19 5.11 -17.43 -0.09 -0.28 16 18 N -0.91 -28.22 10.64 55.49 0.59 -27.63 16 19 Si 0.90 23.12 29.57 -169.99 -5.03 18.09 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 24 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 26 H 0.12 1.57 6.29 -52.49 -0.33 1.24 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.12 1.65 6.29 -52.49 -0.33 1.32 16 31 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.06 1.37 7.43 -51.93 -0.39 0.98 16 35 H 0.05 1.07 7.45 -51.93 -0.39 0.69 16 36 H 0.03 0.73 7.40 -51.93 -0.38 0.34 16 37 H 0.04 1.04 7.22 -51.93 -0.37 0.67 16 38 H 0.01 0.19 6.41 -51.93 -0.33 -0.15 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -34.07 316.34 -6.01 -40.07 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.71 Total: -4.14 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.22 Total: -3.13 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.06 Total: -44.30 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.32 Total: -11.37 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.09 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.07 -6.01 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143143790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.328 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds