Wall clock time and date at job start Mon Mar 30 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48504 * 109.47253 * 273.80825 * 3 2 1 5 5 H 1.48504 * 109.47067 * 33.80819 * 3 2 1 6 6 H 1.48505 * 109.46894 * 153.80764 * 3 2 1 7 7 C 1.37874 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00342 * 351.25752 * 7 2 1 9 9 C 1.50701 * 119.99764 * 171.53710 * 7 2 1 10 10 C 1.52999 * 115.55182 * 303.24477 * 9 7 2 11 11 N 1.46503 * 109.47212 * 302.36230 * 10 9 7 12 12 C 1.34770 * 120.00611 * 184.69777 * 11 10 9 13 13 O 1.21625 * 119.99593 * 5.04876 * 12 11 10 14 14 C 1.47096 * 120.00323 * 185.04908 * 12 11 10 15 15 C 1.32999 * 119.99969 * 187.62675 * 14 12 11 16 16 C 1.50704 * 120.00258 * 17.09107 * 15 14 12 17 17 H 1.09006 * 110.45365 * 6.16152 * 16 15 14 18 18 C 1.54506 * 110.51067 * 128.76111 * 16 15 14 19 19 C 1.54479 * 104.06192 * 118.64534 * 18 16 15 20 20 O 1.44432 * 104.79997 * 23.98321 * 19 18 16 21 21 C 1.44427 * 105.27430 * 319.48387 * 20 19 18 22 22 C 1.53001 * 117.49854 * 157.53363 * 9 7 2 23 23 C 1.53006 * 60.00151 * 252.50702 * 22 9 7 24 24 H 0.97003 * 120.00305 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47324 * 62.35807 * 10 9 7 26 26 H 1.08997 * 109.47267 * 182.36043 * 10 9 7 27 27 H 0.97002 * 119.99672 * 4.69521 * 11 10 9 28 28 H 1.07998 * 120.00117 * 7.62259 * 14 12 11 29 29 H 1.07997 * 119.99667 * 197.09884 * 15 14 12 30 30 H 1.08999 * 110.51672 * 237.29570 * 18 16 15 31 31 H 1.09003 * 110.51284 * 0.02562 * 18 16 15 32 32 H 1.09001 * 110.37023 * 142.80691 * 19 18 16 33 33 H 1.09000 * 110.37626 * 265.15184 * 19 18 16 34 34 H 1.08997 * 110.37242 * 281.68223 * 21 20 19 35 35 H 1.08998 * 110.36951 * 159.34261 * 21 20 19 36 36 H 1.08990 * 117.49888 * 0.02562 * 22 9 7 37 37 H 1.09002 * 117.49498 * 145.02076 * 22 9 7 38 38 H 1.08997 * 117.50051 * 252.50983 * 23 22 9 39 39 H 1.09004 * 117.49470 * 107.48459 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4160 2.0930 -1.3970 5 1 1.4890 2.6281 0.7790 6 1 3.5846 1.4183 0.6180 7 6 2.0045 -1.1940 -0.0005 8 1 1.4739 -2.1240 0.1412 9 6 3.4992 -1.2010 -0.1926 10 6 4.0030 -0.5338 -1.4740 11 7 3.3905 -1.1828 -2.6359 12 6 3.7596 -0.8232 -3.8811 13 8 4.6651 -0.0271 -4.0409 14 6 3.0674 -1.3934 -5.0470 15 6 3.5263 -1.1590 -6.2731 16 6 4.9328 -0.6540 -6.4676 17 1 5.4672 -0.6399 -5.5176 18 6 5.6836 -1.5266 -7.4982 19 6 6.0351 -0.5437 -8.6369 20 8 6.0445 0.7579 -8.0111 21 6 4.9195 0.7528 -7.1055 22 6 4.2719 -2.4172 0.3221 23 6 4.3728 -1.0793 1.0576 24 1 -0.4851 0.8400 0.0004 25 1 3.7335 0.5224 -1.4639 26 1 5.0870 -0.6317 -1.5326 27 1 2.7193 -1.8715 -2.5088 28 1 2.1866 -2.0026 -4.9075 29 1 2.8908 -1.3304 -7.1294 30 1 6.5905 -1.9419 -7.0586 31 1 5.0374 -2.3229 -7.8674 32 1 7.0182 -0.7745 -9.0473 33 1 5.2775 -0.5830 -9.4196 34 1 3.9908 0.9124 -7.6532 35 1 5.0456 1.5180 -6.3395 36 1 3.6991 -3.2123 0.7992 37 1 5.1393 -2.7422 -0.2524 38 1 5.3065 -0.5243 0.9671 39 1 3.8663 -0.9942 2.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270951500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:35 Heat of formation + Delta-G solvation = -55.598890 kcal Electronic energy + Delta-G solvation = -20166.124745 eV Core-core repulsion = 17074.321595 eV Total energy + Delta-G solvation = -3091.803150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09960 -40.06920 -38.72557 -35.41208 -34.84149 -34.31688 -31.88767 -29.86618 -28.58044 -27.17716 -24.19363 -23.45957 -23.09709 -21.85608 -21.28006 -20.34920 -18.51171 -17.94685 -17.33068 -17.12409 -16.89323 -16.40602 -16.06578 -15.83117 -15.20316 -14.93109 -14.90700 -14.66305 -14.07628 -13.96081 -13.83926 -13.60679 -13.04247 -12.74778 -12.64660 -12.43800 -12.17287 -12.09882 -12.01524 -11.82167 -11.46429 -11.10971 -10.80949 -10.73568 -10.63134 -10.35087 -10.10026 -9.76318 -8.34929 -6.35616 0.36099 1.27502 1.35082 1.44009 2.26315 2.30345 2.42925 2.96143 3.05437 3.37179 3.74815 3.79423 3.97922 4.00745 4.05003 4.22004 4.26943 4.35109 4.43728 4.45371 4.52756 4.57610 4.77213 4.80686 4.84767 4.90415 4.90579 5.02712 5.09513 5.17739 5.22610 5.28371 5.49400 5.59531 5.66815 5.70321 5.85970 6.28716 6.67114 6.78287 7.31286 7.34532 8.79437 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.004760 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.311924 B = 5881.313184 C = 6133.500524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.234 1.234 7 C -0.476 4.476 8 H 0.049 0.951 9 C -0.042 4.042 10 C 0.158 3.842 11 N -0.698 5.698 12 C 0.526 3.474 13 O -0.584 6.584 14 C -0.223 4.223 15 C -0.042 4.042 16 C -0.130 4.130 17 H 0.100 0.900 18 C -0.140 4.140 19 C 0.039 3.961 20 O -0.405 6.405 21 C 0.062 3.938 22 C -0.155 4.155 23 C -0.187 4.187 24 H 0.265 0.735 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.413 0.587 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.818 -4.997 -14.655 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.156 4.156 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.157 1.157 7 C -0.513 4.513 8 H 0.067 0.933 9 C -0.043 4.043 10 C 0.033 3.967 11 N -0.347 5.347 12 C 0.317 3.683 13 O -0.469 6.469 14 C -0.244 4.244 15 C -0.061 4.061 16 C -0.149 4.149 17 H 0.117 0.883 18 C -0.177 4.177 19 C -0.037 4.037 20 O -0.324 6.324 21 C -0.014 4.014 22 C -0.192 4.192 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.249 0.751 28 H 0.172 0.828 29 H 0.182 0.818 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.421 -4.164 -14.739 17.981 hybrid contribution -0.644 0.664 0.648 1.129 sum 8.777 -3.500 -14.091 16.966 Atomic orbital electron populations 1.69996 1.07756 1.27831 1.51633 1.25436 0.94800 1.01515 0.93893 0.86291 0.81116 0.80753 0.77526 1.21739 1.22404 1.15700 1.20352 0.89216 0.93158 1.48609 0.93327 1.19472 0.92676 1.00923 0.91191 1.20858 0.95859 0.94747 0.85188 1.45879 1.43016 1.40873 1.04891 1.19355 0.82593 0.81936 0.84440 1.90616 1.32119 1.37931 1.86227 1.22800 1.04020 1.05507 0.92024 1.23848 0.94324 0.90800 0.97169 1.22281 0.95212 0.95191 1.02200 0.88264 1.23000 1.00854 0.98756 0.95139 1.23671 1.03459 0.81266 0.95310 1.89090 1.49689 1.35297 1.58332 1.23286 0.89651 0.96899 0.91612 1.22827 1.01673 0.91046 1.03690 1.23092 1.01196 1.01089 0.97168 0.92555 0.95242 0.91986 0.75091 0.82827 0.81767 0.90830 0.87909 0.87892 0.90346 0.90846 0.91154 0.89522 0.88375 0.89186 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.96 21.45 0.30 -54.78 16 2 C 0.04 2.37 5.45 84.65 0.46 2.83 16 3 Si 0.92 44.39 24.66 68.60 1.69 46.08 16 4 H -0.29 -14.55 6.96 99.48 0.69 -13.86 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.23 -10.47 6.21 99.48 0.62 -9.85 16 7 C -0.48 -24.62 8.83 25.60 0.23 -24.39 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C -0.04 -1.77 0.97 -52.93 -0.05 -1.82 16 10 C 0.16 6.59 5.06 86.38 0.44 7.03 16 11 N -0.70 -26.57 5.42 -466.71 -2.53 -29.10 16 12 C 0.53 18.90 7.54 86.57 0.65 19.56 16 13 O -0.58 -24.09 13.35 -4.11 -0.05 -24.14 16 14 C -0.22 -5.83 10.00 23.43 0.23 -5.60 16 15 C -0.04 -0.89 8.55 24.52 0.21 -0.68 16 16 C -0.13 -3.23 2.62 -10.53 -0.03 -3.26 16 17 H 0.10 3.25 4.98 -4.20 -0.02 3.23 16 18 C -0.14 -2.50 6.73 31.61 0.21 -2.29 16 19 C 0.04 0.69 7.63 72.48 0.55 1.24 16 20 O -0.40 -10.80 11.65 -148.98 -1.74 -12.53 16 21 C 0.06 1.63 7.17 72.48 0.52 2.15 16 22 C -0.16 -5.53 9.94 30.60 0.30 -5.23 16 23 C -0.19 -7.14 8.84 30.60 0.27 -6.87 16 24 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.03 1.38 4.22 -2.38 -0.01 1.37 16 26 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 27 H 0.41 15.02 8.05 -92.71 -0.75 14.28 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.30 7.73 -2.39 -0.02 1.28 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.60 7.86 -2.39 -0.02 1.59 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -66.24 317.16 1.86 -64.38 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.19 Total: 27.43 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.00 Total: -17.33 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.23 Total: -83.88 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.79 Total: -36.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.69 Total: 46.08 kcal Total: -66.24 1.86 -64.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270951500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.778 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds