Wall clock time and date at job start Mon Mar 30 2020 00:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 C 1.51850 * 108.64837 * 301.98095 * 15 13 12 17 17 C 1.53027 * 110.73481 * 172.27648 * 16 15 13 18 18 C 1.51370 * 108.52685 * 85.89929 * 17 16 15 19 19 C 1.29523 * 120.36223 * 288.10598 * 18 17 16 20 20 C 1.51379 * 120.35947 * 359.97438 * 19 18 17 21 21 C 1.51847 * 108.65522 * 178.01531 * 15 13 12 22 22 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 25 25 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 26 26 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 27 27 H 1.09002 * 108.60838 * 59.99411 * 15 13 12 28 28 H 1.09005 * 109.22305 * 292.72503 * 16 15 13 29 29 H 1.08995 * 109.22364 * 52.07064 * 16 15 13 30 30 H 1.09001 * 109.67435 * 326.17825 * 17 16 15 31 31 H 1.09003 * 109.78540 * 205.68374 * 17 16 15 32 32 H 1.08001 * 119.81869 * 108.08169 * 18 17 16 33 33 H 1.07999 * 119.82088 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.60821 * 312.15890 * 20 19 18 35 35 H 1.08999 * 109.60902 * 191.63982 * 20 19 18 36 36 H 1.08999 * 109.21873 * 307.93313 * 21 15 13 37 37 H 1.09005 * 109.21649 * 67.31477 * 21 15 13 38 38 H 1.08993 * 113.76952 * 221.15022 * 22 12 11 39 39 H 1.08993 * 113.76905 * 89.74994 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 6 0.2071 -5.0054 3.7126 17 6 -0.9210 -5.0085 4.7467 18 6 -0.8406 -6.2937 5.5423 19 6 -1.1712 -7.4220 4.9988 20 6 -1.6427 -7.4695 3.5611 21 6 -0.4433 -7.2167 2.6450 22 6 2.1609 -3.7402 0.0462 23 1 -0.4850 0.8401 0.0004 24 1 -0.3474 -1.7969 -1.0267 25 1 1.3275 -2.4975 2.2141 26 1 -0.3215 -2.8326 1.5249 27 1 -1.1490 -5.2815 2.0887 28 1 1.0817 -5.5033 4.1314 29 1 0.4645 -3.9749 3.4680 30 1 -1.8840 -4.9519 4.2393 31 1 -0.8097 -4.1559 5.4167 32 1 -0.5053 -6.2699 6.5687 33 1 -1.1109 -8.3336 5.5746 34 1 -2.3967 -6.6995 3.3977 35 1 -2.0661 -8.4509 3.3472 36 1 -0.6262 -7.6837 1.6772 37 1 0.4482 -7.6561 3.0926 38 1 2.2027 -4.2899 -0.8940 39 1 3.1456 -3.5472 0.4717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329805473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:43 Heat of formation + Delta-G solvation = -65.700029 kcal Electronic energy + Delta-G solvation = -20776.967205 eV Core-core repulsion = 17684.726036 eV Total energy + Delta-G solvation = -3092.241168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53899 -39.76549 -38.43354 -35.83533 -34.14967 -33.72074 -32.76855 -30.31591 -27.59638 -27.04572 -26.16076 -24.80839 -22.53305 -21.21432 -19.99022 -19.20776 -18.85590 -17.97396 -17.54503 -17.04662 -16.73843 -16.10333 -15.89266 -15.51748 -14.93653 -14.68237 -14.24836 -14.19824 -14.03524 -13.86857 -13.55957 -13.41343 -13.12421 -12.85888 -12.75315 -12.59926 -12.25301 -12.22772 -12.13919 -11.78991 -11.54415 -11.34881 -11.20348 -10.86806 -10.62134 -10.24567 -9.86551 -9.56776 -8.26032 -6.42895 1.45182 1.46787 1.50813 1.59280 1.63493 1.96559 2.41463 2.96708 3.38676 3.62400 3.73401 3.85515 4.10718 4.15851 4.21353 4.23276 4.41346 4.48266 4.49965 4.58000 4.59518 4.63389 4.79734 4.86154 4.88044 4.89345 4.99236 5.07477 5.18480 5.21876 5.25228 5.27657 5.39851 5.72987 5.82726 5.93692 6.08575 6.62403 6.85860 7.14581 7.30826 7.44461 8.80010 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.028698 B = 0.005088 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.445437 B = 5501.385244 C = 6000.033332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.283 1.283 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.099 3.901 12 N -0.633 5.633 13 C 0.519 3.481 14 O -0.600 6.600 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.087 4.087 21 C -0.087 4.087 22 C 0.108 3.892 23 H 0.276 0.724 24 H 0.388 0.612 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -6.570 10.949 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.177 3.823 10 O -0.399 6.399 11 C -0.023 4.023 12 N -0.366 5.366 13 C 0.311 3.689 14 O -0.483 6.483 15 C -0.108 4.108 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.180 4.180 19 C -0.180 4.180 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.015 4.015 23 H 0.086 0.914 24 H 0.242 0.758 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.474 -7.699 10.608 13.560 hybrid contribution 0.291 1.322 -0.259 1.379 sum -3.183 -6.376 10.349 12.566 Atomic orbital electron populations 1.69459 1.07019 1.28919 1.50080 1.25702 0.95749 1.02404 0.92620 0.85424 0.78478 0.78466 0.78475 1.19568 1.19743 1.20875 1.21711 0.94084 0.90832 1.52935 0.91189 1.20138 0.85842 0.91660 0.84622 1.86052 1.47499 1.49692 1.56622 1.24078 0.99965 0.77191 1.01066 1.50286 1.39845 1.05341 1.41147 1.21219 0.84146 0.80674 0.82855 1.90588 1.58233 1.40341 1.59159 1.20963 0.96699 0.99101 0.94080 1.21277 0.99341 1.00108 0.93311 1.20788 0.97998 0.96991 0.96572 1.22699 1.00727 0.94477 1.00067 1.22699 1.00498 0.98558 0.96219 1.20817 0.96395 1.03078 0.92132 1.21031 0.99181 0.92519 0.99796 1.23442 0.94206 0.92245 0.91596 0.91432 0.75822 0.88935 0.91258 0.88780 0.92086 0.91423 0.90549 0.89840 0.86112 0.86093 0.90521 0.89815 0.92487 0.92441 0.92612 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.01 11.20 21.45 0.24 -44.77 16 2 C 0.04 1.75 5.40 84.66 0.46 2.20 16 3 Si 0.97 38.67 29.54 68.60 2.03 40.70 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.56 -27.47 8.61 25.60 0.22 -27.25 16 8 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 9 C 0.22 10.39 1.40 -10.88 -0.02 10.37 16 10 O -0.59 -30.35 13.49 -148.98 -2.01 -32.36 16 11 C 0.10 4.11 6.11 86.45 0.53 4.64 16 12 N -0.63 -26.68 3.54 -839.60 -2.97 -29.66 16 13 C 0.52 21.23 7.34 87.66 0.64 21.87 16 14 O -0.60 -28.34 16.51 -3.02 -0.05 -28.39 16 15 C -0.09 -2.70 1.90 -12.30 -0.02 -2.73 16 16 C -0.10 -2.74 4.85 30.23 0.15 -2.60 16 17 C -0.09 -1.80 5.62 30.07 0.17 -1.63 16 18 C -0.16 -3.07 9.34 27.37 0.26 -2.82 16 19 C -0.16 -3.07 9.34 27.37 0.26 -2.81 16 20 C -0.09 -1.80 5.62 30.07 0.17 -1.63 16 21 C -0.09 -2.43 4.28 30.22 0.13 -2.30 16 22 C 0.11 4.77 8.23 86.49 0.71 5.48 16 23 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 24 H 0.39 20.12 6.60 -74.06 -0.49 19.63 16 25 H 0.09 3.61 7.76 -2.39 -0.02 3.60 16 26 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 27 H 0.09 2.83 7.89 -2.39 -0.02 2.81 16 28 H 0.06 1.68 7.86 -2.38 -0.02 1.66 16 29 H 0.07 1.94 5.54 -2.39 -0.01 1.93 16 30 H 0.08 1.56 6.68 -2.39 -0.02 1.54 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.08 1.52 6.68 -2.39 -0.02 1.51 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.74 7.80 -2.39 -0.02 1.73 16 37 H 0.06 1.70 7.85 -2.38 -0.02 1.68 16 38 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16 Total: -1.00 -57.95 311.18 1.44 -56.51 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.56 Total: 37.16 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 3.65 Total: 0.81 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.73 Total: -74.43 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -2.06 Total: -60.75 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -57.95 1.44 -56.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329805473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.185 kcal (2) G-P(sol) polarization free energy of solvation -57.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds