Wall clock time and date at job start Mon Mar 30 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00203 * 2 1 4 4 H 1.48494 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47017 * 300.00222 * 3 2 1 6 6 H 1.48503 * 109.46672 * 60.00335 * 3 2 1 7 7 C 1.37876 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47376 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47413 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99948 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00252 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00045 * 179.97438 * 13 12 11 16 16 H 1.08999 * 110.37176 * 299.10426 * 15 13 12 17 17 C 1.54614 * 110.40908 * 61.46028 * 15 13 12 18 18 C 1.55986 * 104.57078 * 118.38304 * 17 15 13 19 19 H 1.08997 * 116.07660 * 160.93465 * 18 17 15 20 20 C 1.55958 * 104.30643 * 290.85635 * 18 17 15 21 21 C 1.52402 * 104.85246 * 70.31267 * 20 18 17 22 22 O 1.20762 * 127.29258 * 179.74040 * 21 20 18 23 23 C 1.53523 * 105.38295 * 359.65586 * 21 20 18 24 24 H 1.08998 * 116.44191 * 160.70559 * 23 21 20 25 25 C 1.56926 * 100.84125 * 34.09961 * 23 21 20 26 26 H 0.97001 * 119.99606 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47395 * 59.99484 * 9 7 2 28 28 H 1.09002 * 109.47104 * 299.99578 * 9 7 2 29 29 H 1.09002 * 109.47267 * 59.99421 * 10 9 7 30 30 H 1.09002 * 109.46672 * 299.99858 * 10 9 7 31 31 H 1.08998 * 109.47052 * 60.00021 * 11 10 9 32 32 H 1.08997 * 109.47102 * 300.00120 * 11 10 9 33 33 H 0.96999 * 120.00293 * 0.02562 * 12 11 10 34 34 H 1.09002 * 110.43668 * 237.19090 * 17 15 13 35 35 H 1.08998 * 110.43651 * 359.57483 * 17 15 13 36 36 H 1.08999 * 110.35712 * 189.23496 * 20 18 17 37 37 H 1.09002 * 110.36206 * 311.42405 * 20 18 17 38 38 H 1.08996 * 112.08498 * 63.25770 * 25 23 21 39 39 H 1.09001 * 112.08887 * 189.86961 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 7 2.4321 -6.1006 -0.0049 13 6 1.9828 -7.3713 -0.0051 14 8 0.7905 -7.5930 -0.0044 15 6 2.9621 -8.5168 -0.0073 16 1 3.5851 -8.4816 -0.9010 17 6 3.8406 -8.4776 1.2644 18 6 3.5234 -9.8151 2.0018 19 1 4.2551 -10.1395 2.7417 20 6 2.0543 -9.6437 2.4961 21 6 1.2077 -9.6928 1.2298 22 8 0.0061 -9.6033 1.1490 23 6 2.2068 -9.8782 0.0790 24 1 1.8016 -10.2571 -0.8592 25 6 3.2944 -10.7712 0.7733 26 1 -0.4849 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.8719 -3.6052 0.8872 30 1 2.8718 -3.6036 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8538 -5.0454 0.8868 33 1 3.3858 -5.9234 -0.0051 34 1 4.8962 -8.4317 0.9965 35 1 3.5697 -7.6257 1.8880 36 1 1.7825 -10.4583 3.1674 37 1 1.9324 -8.6835 2.9976 38 1 2.8968 -11.7397 1.0767 39 1 4.1904 -10.8761 0.1614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359972283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:20 Heat of formation + Delta-G solvation = -85.575680 kcal Electronic energy + Delta-G solvation = -19989.809993 eV Core-core repulsion = 16896.706952 eV Total energy + Delta-G solvation = -3093.103041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44707 -38.77785 -37.37649 -35.41226 -33.35117 -31.55839 -30.43477 -29.14935 -27.52505 -26.50745 -23.50472 -22.17708 -20.73294 -20.55152 -20.00766 -18.65019 -17.04246 -16.90302 -16.41736 -15.94307 -15.43587 -15.03382 -14.65448 -14.44046 -13.91155 -13.77671 -13.71941 -13.09015 -12.67213 -12.35063 -12.25306 -11.94003 -11.85672 -11.73739 -11.60725 -11.39993 -11.11342 -10.92954 -10.85310 -10.74864 -10.57964 -9.88944 -9.82094 -9.36848 -9.26575 -9.10970 -8.79221 -8.38718 -6.02892 -4.06261 2.11258 2.71071 3.28579 3.29003 3.36586 3.40033 3.90914 4.03364 4.07533 4.39132 4.43246 4.60414 4.79715 4.85027 4.91857 4.96685 5.15477 5.32852 5.37726 5.41875 5.44043 5.57097 5.61362 5.66452 5.73966 5.75724 5.78733 5.86119 6.14490 6.46453 6.57679 6.80694 6.98443 7.62430 7.66499 7.68460 7.74568 7.95749 8.34277 8.38104 9.00680 9.58078 11.08417 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.003370 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.940154 B = 8305.737323 C = 8606.652574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.724 5.724 13 C 0.499 3.501 14 O -0.525 6.525 15 C -0.108 4.108 16 H 0.110 0.890 17 C -0.120 4.120 18 C -0.094 4.094 19 H 0.114 0.886 20 C -0.182 4.182 21 C 0.372 3.628 22 O -0.415 6.415 23 C -0.134 4.134 24 H 0.116 0.884 25 C -0.120 4.120 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.688 -22.001 2.752 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.284 3.716 14 O -0.402 6.402 15 C -0.129 4.129 16 H 0.128 0.872 17 C -0.158 4.158 18 C -0.113 4.113 19 H 0.132 0.868 20 C -0.220 4.220 21 C 0.243 3.757 22 O -0.284 6.284 23 C -0.154 4.154 24 H 0.134 0.866 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.981 -21.951 2.710 24.266 hybrid contribution 0.962 1.256 -0.100 1.585 sum 10.943 -20.695 2.610 23.555 Atomic orbital electron populations 1.69983 1.06070 1.26597 1.50571 1.25043 0.94860 0.99340 0.95272 0.86522 0.80021 0.83741 0.77620 1.19754 1.20989 1.20981 1.21233 0.93005 0.90919 1.50895 0.92593 1.19038 0.93865 0.90885 0.97680 1.21881 0.99735 0.93343 1.00813 1.21651 0.91880 0.85121 1.02012 1.46193 1.10746 1.05836 1.74667 1.20611 0.89744 0.84251 0.77000 1.90851 1.16371 1.84288 1.48641 1.22375 0.96799 0.92489 1.01252 0.87165 1.22783 0.99679 0.98358 0.94938 1.23602 0.95521 0.95119 0.97020 0.86762 1.23248 0.95712 1.04414 0.98602 1.25079 0.88850 0.70345 0.91388 1.90412 1.15842 1.35172 1.86939 1.24029 0.96638 0.94753 0.99933 0.86588 1.23631 0.98211 0.97503 0.96435 0.92959 0.96280 0.96281 0.92765 0.92734 0.91780 0.91846 0.76850 0.89937 0.90493 0.88617 0.88704 0.90337 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.72 -10.11 5.43 -60.30 -0.33 -10.44 16 13 C 0.50 7.22 6.53 -10.98 -0.07 7.14 16 14 O -0.53 -10.18 13.24 -17.10 -0.23 -10.41 16 15 C -0.11 -1.02 3.10 -89.36 -0.28 -1.29 16 16 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.12 -0.84 5.78 -24.29 -0.14 -0.98 16 18 C -0.09 -0.59 5.26 -85.08 -0.45 -1.04 16 19 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 20 C -0.18 -1.68 6.11 -25.46 -0.16 -1.84 16 21 C 0.37 4.92 5.27 -26.77 -0.14 4.78 16 22 O -0.41 -7.57 16.49 -16.66 -0.27 -7.85 16 23 C -0.13 -1.32 4.63 -86.66 -0.40 -1.72 16 24 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 25 C -0.12 -0.73 6.46 -22.24 -0.14 -0.88 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 4.32 8.45 -40.82 -0.35 3.98 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.63 7.38 -51.93 -0.38 0.25 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.96 7.84 -51.93 -0.41 0.56 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -35.28 318.50 -8.98 -44.26 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.17 Total: -1.37 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.49 Total: -9.22 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.41 Total: -36.67 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.50 Total: -18.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.28 -8.98 -44.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359972283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.314 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds