Wall clock time and date at job start Mon Mar 30 2020 00:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37102 * 119.99868 * 2 1 4 4 H 1.07993 * 119.99729 * 174.77241 * 3 2 1 5 5 C 1.38952 * 120.00205 * 355.04929 * 3 2 1 6 6 N 1.31414 * 119.99466 * 4.74947 * 5 3 2 7 7 Si 1.86795 * 120.00279 * 184.74588 * 5 3 2 8 8 H 1.48506 * 109.46748 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46859 * 119.99960 * 7 5 3 10 10 H 1.48492 * 109.47457 * 240.00200 * 7 5 3 11 11 C 1.34772 * 119.99806 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99498 * 174.54918 * 11 2 1 13 13 C 1.50692 * 120.00440 * 354.55477 * 11 2 1 14 14 C 1.55922 * 115.85385 * 65.32779 * 13 11 2 15 15 C 1.54614 * 104.58646 * 159.96250 * 14 13 11 16 16 C 1.55980 * 104.46242 * 0.33466 * 15 14 13 17 17 H 1.08999 * 116.08124 * 199.12297 * 16 15 14 18 18 C 1.55962 * 104.31013 * 70.04078 * 16 15 14 19 19 C 1.53531 * 115.83993 * 302.30734 * 13 11 2 20 20 O 1.20764 * 127.32466 * 19.69273 * 19 13 11 21 21 C 1.56932 * 116.14327 * 183.21178 * 13 11 2 22 22 C 1.52997 * 112.08551 * 296.85256 * 21 13 11 23 23 C 1.52995 * 112.08901 * 63.53793 * 21 13 11 24 24 H 1.08994 * 109.46873 * 64.89581 * 1 2 3 25 25 H 1.08996 * 109.46769 * 184.89865 * 1 2 3 26 26 H 1.09001 * 109.47135 * 304.89685 * 1 2 3 27 27 H 0.97006 * 119.99611 * 179.97438 * 6 5 3 28 28 H 1.09000 * 110.41499 * 278.73965 * 14 13 11 29 29 H 1.08997 * 110.41042 * 41.18869 * 14 13 11 30 30 H 1.09006 * 110.43331 * 119.07557 * 15 14 13 31 31 H 1.08993 * 110.43651 * 241.46826 * 15 14 13 32 32 H 1.09007 * 110.35585 * 48.46488 * 18 16 15 33 33 H 1.08995 * 110.36120 * 170.65643 * 18 16 15 34 34 H 1.09003 * 109.47179 * 59.99686 * 22 21 13 35 35 H 1.08997 * 109.47234 * 180.02562 * 22 21 13 36 36 H 1.09004 * 109.47236 * 300.00067 * 22 21 13 37 37 H 1.09003 * 109.46980 * 59.99816 * 23 21 13 38 38 H 1.08994 * 109.47248 * 180.02562 * 23 21 13 39 39 H 1.09004 * 109.47175 * 300.00541 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2271 1.1893 0.0852 5 6 1.4597 2.3885 -0.1038 6 7 0.1456 2.3923 -0.1080 7 14 2.3988 3.9977 -0.2374 8 1 3.8580 3.7228 -0.2104 9 1 2.0461 4.6722 -1.5125 10 1 2.0391 4.8770 0.9038 11 6 2.1389 -1.1672 0.0005 12 8 3.3478 -1.1695 -0.0993 13 6 1.3906 -2.4692 0.1249 14 6 0.4420 -2.8243 -1.0605 15 6 0.2288 -4.3513 -0.9447 16 6 1.0633 -4.7674 0.3056 17 1 1.3160 -5.8249 0.3829 18 6 0.2822 -4.1587 1.5105 19 6 0.5161 -2.6214 1.3777 20 8 0.0980 -1.7406 2.0902 21 6 2.2691 -3.7678 0.1942 22 6 3.0788 -3.9835 -1.0860 23 6 3.1569 -3.7960 1.4399 24 1 -0.3633 0.4360 -0.9305 25 1 -0.3633 -1.0239 0.0878 26 1 -0.3633 0.5879 0.8429 27 1 -0.3368 3.2308 -0.1801 28 1 -0.5075 -2.2990 -0.9582 29 1 0.9135 -2.5773 -2.0117 30 1 -0.8263 -4.5776 -0.7906 31 1 0.5992 -4.8560 -1.8370 32 1 -0.7782 -4.3999 1.4357 33 1 0.6889 -4.5282 2.4518 34 1 3.7419 -3.1329 -1.2441 35 1 3.6709 -4.8938 -0.9923 36 1 2.4000 -4.0775 -1.9337 37 1 2.5319 -3.7609 2.3323 38 1 3.7469 -4.7125 1.4448 39 1 3.8246 -2.9345 1.4298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520912709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:22 Heat of formation + Delta-G solvation = -63.092671 kcal Electronic energy + Delta-G solvation = -22106.302328 eV Core-core repulsion = 19014.174224 eV Total energy + Delta-G solvation = -3092.128105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.62925 -39.57408 -38.96492 -36.69400 -33.78033 -32.69762 -31.45562 -30.18172 -28.15427 -27.34294 -26.39196 -24.77405 -22.32686 -22.23410 -20.04381 -19.17300 -18.85767 -17.90787 -16.84634 -16.69852 -16.61128 -15.91338 -15.62373 -15.46232 -14.96600 -14.79190 -14.33948 -14.05239 -13.86701 -13.69700 -13.30081 -13.22629 -13.07490 -12.85857 -12.81265 -12.64013 -12.52204 -12.32540 -12.17052 -12.11210 -11.68188 -11.47635 -11.22489 -11.09045 -11.06215 -10.41466 -9.99891 -9.88567 -8.27784 -5.94745 0.94182 1.30113 1.33446 1.49261 1.92906 2.21145 2.89503 3.01433 3.10399 3.37724 3.56264 3.66015 4.04165 4.07568 4.12920 4.23146 4.32583 4.42331 4.49189 4.53605 4.64884 4.80779 4.88737 4.92227 4.97986 5.07919 5.10376 5.13794 5.17436 5.23772 5.25264 5.37670 5.41569 5.45549 5.53982 5.64439 6.00249 6.43607 6.51828 7.12337 7.48021 8.01800 8.63913 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.007134 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.913704 B = 3923.812126 C = 4219.639689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.459 5.459 3 C -0.341 4.341 4 H 0.077 0.923 5 C -0.012 4.012 6 N -0.900 5.900 7 Si 0.998 3.002 8 H -0.274 1.274 9 H -0.265 1.265 10 H -0.270 1.270 11 C 0.457 3.543 12 O -0.622 6.622 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.066 4.066 17 H 0.159 0.841 18 C -0.154 4.154 19 C 0.358 3.642 20 O -0.473 6.473 21 C -0.035 4.035 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.271 0.729 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -17.591 -1.152 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.176 5.176 3 C -0.469 4.469 4 H 0.095 0.905 5 C -0.212 4.212 6 N -0.541 5.541 7 Si 0.820 3.180 8 H -0.198 1.198 9 H -0.190 1.190 10 H -0.195 1.195 11 C 0.246 3.754 12 O -0.510 6.510 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.149 4.149 16 C -0.084 4.084 17 H 0.176 0.824 18 C -0.191 4.191 19 C 0.233 3.767 20 O -0.346 6.346 21 C -0.036 4.036 22 C -0.189 4.189 23 C -0.198 4.198 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.046 -16.927 -0.839 17.220 hybrid contribution 0.501 1.988 0.040 2.050 sum -2.545 -14.940 -0.799 15.176 Atomic orbital electron populations 1.21623 0.79378 0.97634 1.01297 1.43884 1.06820 1.04992 1.61889 1.19821 0.92688 0.84127 1.50251 0.90489 1.26189 0.96835 1.02521 0.95652 1.70331 1.06700 1.28011 1.49015 0.84821 0.77894 0.76703 0.78543 1.19844 1.19030 1.19514 1.19921 0.87450 0.84746 0.83289 1.90423 1.15562 1.87448 1.57537 1.23707 0.98334 0.94478 0.98953 1.22705 0.97082 0.99579 0.95404 1.22786 1.01601 0.91243 0.99286 1.23756 0.91759 0.99823 0.93021 0.82386 1.23875 1.04435 0.88727 1.02036 1.27133 0.74543 0.93232 0.81750 1.90449 1.46472 1.50847 1.46881 1.22298 0.94437 0.90192 0.96676 1.21692 0.99789 1.01572 0.95854 1.21769 0.99557 1.02287 0.96236 0.94047 0.92873 0.93668 0.91917 0.91615 0.91474 0.88523 0.88524 0.85544 0.86736 0.95094 0.89899 0.91070 0.93018 0.89057 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.56 6.90 127.77 0.88 8.45 16 2 N -0.46 -26.50 3.02 -658.90 -1.99 -28.49 16 3 C -0.34 -21.17 9.55 84.04 0.80 -20.37 16 4 H 0.08 5.04 7.20 -2.91 -0.02 5.02 16 5 C -0.01 -0.69 5.45 84.93 0.46 -0.22 16 6 N -0.90 -51.45 9.44 21.66 0.20 -51.25 16 7 Si 1.00 45.65 29.56 68.60 2.03 47.68 16 8 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 C 0.46 24.11 6.75 87.66 0.59 24.70 16 12 O -0.62 -36.32 13.32 -3.09 -0.04 -36.37 16 13 C -0.15 -5.67 0.32 -50.36 -0.02 -5.69 16 14 C -0.11 -3.27 4.55 32.16 0.15 -3.13 16 15 C -0.11 -1.95 5.55 32.18 0.18 -1.77 16 16 C -0.07 -1.12 4.50 -7.32 -0.03 -1.16 16 17 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 18 C -0.15 -3.14 5.64 32.68 0.18 -2.95 16 19 C 0.36 12.81 5.07 31.83 0.16 12.97 16 20 O -0.47 -21.45 15.69 -1.46 -0.02 -21.47 16 21 C -0.04 -1.00 0.57 -49.39 -0.03 -1.03 16 22 C -0.13 -3.65 8.46 71.98 0.61 -3.04 16 23 C -0.14 -4.22 8.51 71.98 0.61 -3.61 16 24 H 0.04 2.23 7.20 -2.39 -0.02 2.22 16 25 H 0.05 2.41 2.56 -2.39 -0.01 2.41 16 26 H 0.04 2.62 6.88 -2.39 -0.02 2.61 16 27 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.07 2.04 6.11 -2.39 -0.01 2.03 16 29 H 0.07 2.14 7.56 -2.39 -0.02 2.12 16 30 H 0.10 1.24 7.83 -2.38 -0.02 1.22 16 31 H 0.10 1.31 7.22 -2.39 -0.02 1.30 16 32 H 0.13 1.90 7.82 -2.38 -0.02 1.88 16 33 H 0.11 1.98 7.30 -2.39 -0.02 1.97 16 34 H 0.03 1.15 6.60 -2.39 -0.02 1.13 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.70 5.40 -2.39 -0.01 1.69 16 37 H 0.05 1.46 5.86 -2.39 -0.01 1.44 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.03 1.08 6.86 -2.38 -0.02 1.06 16 Total: -1.00 -79.56 289.32 5.80 -73.77 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.07 Total: 12.98 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 4.55 Total: 3.15 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.79 Total: -79.74 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.06 Total: -57.84 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -79.56 5.80 -73.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520912709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.673 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds