Wall clock time and date at job start Mon Mar 30 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99835 * 2 1 4 4 C 1.38797 * 120.02778 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05380 * 179.70339 * 4 3 2 6 6 C 1.38201 * 120.10530 * 0.54673 * 5 4 3 7 7 C 1.50703 * 119.96946 * 179.72506 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72661 * 7 6 5 9 9 C 1.46902 * 111.00255 * 293.95458 * 8 7 6 10 10 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 11 11 C 1.50696 * 109.47399 * 190.00043 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00189 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99790 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47167 * 119.99895 * 15 13 11 18 18 H 1.48495 * 109.47058 * 239.99959 * 15 13 11 19 19 C 1.38753 * 120.05779 * 359.45460 * 6 5 4 20 20 O 1.35893 * 120.02899 * 180.29336 * 19 6 5 21 21 C 1.42896 * 117.00057 * 179.97438 * 20 19 6 22 22 C 1.38607 * 120.02617 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47036 * 60.00322 * 1 2 3 24 24 H 1.09003 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47137 * 299.99924 * 1 2 3 26 26 H 1.08001 * 119.97261 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.94422 * 180.29611 * 5 4 3 28 28 H 1.09002 * 109.47152 * 139.72748 * 7 6 5 29 29 H 1.09001 * 109.46980 * 19.72848 * 7 6 5 30 30 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 31 31 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 33 33 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 34 34 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 35 35 H 0.96994 * 119.99598 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.47276 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47270 * 300.00251 * 21 20 19 38 38 H 1.09002 * 109.46948 * 60.00341 * 21 20 19 39 39 H 1.08001 * 120.05686 * 0.04775 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0067 6 6 3.2971 3.6821 0.0010 7 6 3.9774 5.0269 0.0015 8 7 4.4130 5.3558 -1.3623 9 6 5.4622 4.4335 -1.8167 10 6 4.8649 6.7509 -1.4486 11 6 5.0690 7.1243 -2.8942 12 1 4.8814 6.3980 -3.6712 13 6 5.4953 8.3932 -3.2249 14 7 5.7232 9.2777 -2.2787 15 14 5.7477 8.8563 -5.0169 16 1 5.4246 7.6914 -5.8794 17 1 4.8571 9.9926 -5.3647 18 1 7.1626 9.2528 -5.2311 19 6 4.0567 2.5210 0.0004 20 8 5.4136 2.5960 0.0008 21 6 6.1316 1.3605 0.0008 22 6 3.4301 1.2841 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2120 2.3187 0.0014 27 1 1.3277 4.5114 0.0120 28 1 4.8439 4.9954 0.6620 29 1 3.2797 5.7868 0.3534 30 1 5.0776 3.4136 -1.8090 31 1 5.7660 4.6993 -2.8292 32 1 6.3211 4.5030 -1.1492 33 1 4.1125 7.4045 -1.0072 34 1 5.8050 6.8623 -0.9082 35 1 6.0235 10.1702 -2.5114 36 1 7.2027 1.5628 0.0006 37 1 5.8697 0.7880 0.8905 38 1 5.8702 0.7884 -0.8895 39 1 4.0197 0.3792 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046437726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:04 Heat of formation + Delta-G solvation = -37.844563 kcal Electronic energy + Delta-G solvation = -20260.679314 eV Core-core repulsion = 17169.646050 eV Total energy + Delta-G solvation = -3091.033265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52494 -38.99578 -36.87530 -35.75223 -32.56657 -30.92905 -30.06957 -27.80152 -27.26216 -26.94431 -25.83604 -23.64638 -22.03256 -21.27865 -19.94673 -18.59584 -16.81554 -16.34799 -16.14028 -16.03679 -15.62087 -15.27962 -14.73458 -14.60275 -14.05755 -13.76292 -13.63140 -13.05155 -12.72053 -12.50530 -12.40024 -11.90173 -11.72443 -11.54016 -11.34382 -11.18822 -10.96419 -10.81013 -10.73919 -10.53090 -10.44411 -10.11979 -9.73520 -9.11285 -8.47456 -8.37225 -7.80328 -7.04361 -5.95850 -3.96248 1.50567 1.57928 3.13481 3.35166 3.42196 3.47430 3.47923 3.86356 4.49578 4.82307 4.98150 5.01231 5.06156 5.08414 5.19124 5.22879 5.30307 5.37957 5.42410 5.48297 5.54864 5.62344 5.78583 6.01382 6.25150 6.35679 6.45297 6.48909 6.60118 6.70744 6.85646 7.00229 7.29498 7.40141 7.46487 7.55485 7.89594 8.19040 8.34805 8.66809 9.12309 9.67476 11.15157 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.004421 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.229970 B = 6332.457906 C = 6753.858004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.152 3.848 4 C -0.244 4.244 5 C -0.030 4.030 6 C -0.124 4.124 7 C 0.102 3.898 8 N -0.535 5.535 9 C 0.044 3.956 10 C 0.192 3.808 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.053 3.947 14 N -0.900 5.900 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.170 3.830 20 O -0.298 6.298 21 C 0.024 3.976 22 C -0.244 4.244 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.014 0.986 33 H 0.028 0.972 34 H -0.010 1.010 35 H 0.259 0.741 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 -17.982 6.843 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.106 3.894 4 C -0.263 4.263 5 C -0.048 4.048 6 C -0.126 4.126 7 C -0.026 4.026 8 N -0.260 5.260 9 C -0.104 4.104 10 C 0.066 3.934 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C 0.124 3.876 20 O -0.211 6.211 21 C -0.072 4.072 22 C -0.263 4.263 23 H 0.075 0.925 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.008 0.992 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.989 -17.863 6.551 20.270 hybrid contribution 0.603 0.286 -0.427 0.792 sum -6.386 -17.578 6.124 19.679 Atomic orbital electron populations 1.23022 0.78504 1.03545 1.01541 1.86015 1.21312 1.27295 1.88860 1.18591 0.91478 0.83973 0.95318 1.21069 0.99751 0.92159 1.13292 1.20679 0.92945 0.97134 0.94086 1.19316 0.92814 0.93874 1.06555 1.20806 0.97970 0.91709 0.92077 1.62186 1.38802 1.05856 1.19122 1.22305 0.92559 0.95363 1.00210 1.19742 0.94044 0.82219 0.97345 1.21222 1.43527 0.97079 0.92227 0.91868 1.24987 0.95814 0.96453 0.97464 1.69974 1.47063 1.04991 1.32003 0.86462 0.77556 0.78416 0.85115 1.19690 1.21060 1.21184 1.18480 0.82643 0.92506 0.93985 1.86379 1.15125 1.31723 1.87879 1.23043 0.97021 0.85973 1.01127 1.20262 0.92579 0.97252 1.16231 0.92531 0.88558 0.92668 0.85649 0.84921 0.94801 0.90845 0.93115 0.91765 0.96765 0.95349 0.99181 0.93088 0.88331 0.92925 0.92648 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.49 -19.41 -0.20 -4.16 16 3 C 0.15 2.10 6.68 -39.24 -0.26 1.84 16 4 C -0.24 -3.24 9.04 -39.40 -0.36 -3.60 16 5 C -0.03 -0.44 9.66 -39.62 -0.38 -0.83 16 6 C -0.12 -2.12 5.17 -104.44 -0.54 -2.66 16 7 C 0.10 2.00 4.99 -4.98 -0.02 1.98 16 8 N -0.54 -12.35 4.74 -245.82 -1.17 -13.51 16 9 C 0.04 0.94 7.86 60.07 0.47 1.42 16 10 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16 11 C -0.50 -14.55 8.46 -34.44 -0.29 -14.84 16 12 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.17 2.71 5.40 -39.24 -0.21 2.50 16 20 O -0.30 -4.62 6.53 -19.40 -0.13 -4.75 16 21 C 0.02 0.25 9.81 101.05 0.99 1.25 16 22 C -0.24 -3.48 8.97 -39.29 -0.35 -3.83 16 23 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 26 H 0.13 1.33 6.29 -52.49 -0.33 1.00 16 27 H 0.13 1.79 8.03 -52.49 -0.42 1.37 16 28 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 29 H 0.07 1.38 7.79 -51.93 -0.40 0.98 16 30 H 0.05 0.99 4.99 -51.93 -0.26 0.73 16 31 H 0.06 1.47 6.76 -51.93 -0.35 1.11 16 32 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 16 33 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 34 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -32.80 316.06 -6.79 -39.59 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.68 Total: -3.53 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.09 Total: -8.93 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.43 Total: -40.07 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.33 Total: -8.91 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.80 -6.79 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046437726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.742 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds