Wall clock time and date at job start Mon Mar 30 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99835 * 2 1 4 4 C 1.38797 * 120.02778 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05380 * 179.70339 * 4 3 2 6 6 C 1.38201 * 120.10530 * 0.54673 * 5 4 3 7 7 C 1.50703 * 119.96946 * 179.72506 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72661 * 7 6 5 9 9 C 1.46902 * 111.00255 * 293.95458 * 8 7 6 10 10 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 11 11 C 1.50696 * 109.47399 * 190.00043 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00189 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99790 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47167 * 119.99895 * 15 13 11 18 18 H 1.48495 * 109.47058 * 239.99959 * 15 13 11 19 19 C 1.38753 * 120.05779 * 359.45460 * 6 5 4 20 20 O 1.35893 * 120.02899 * 180.29336 * 19 6 5 21 21 C 1.42896 * 117.00057 * 179.97438 * 20 19 6 22 22 C 1.38607 * 120.02617 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47036 * 60.00322 * 1 2 3 24 24 H 1.09003 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47137 * 299.99924 * 1 2 3 26 26 H 1.08001 * 119.97261 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.94422 * 180.29611 * 5 4 3 28 28 H 1.09002 * 109.47152 * 139.72748 * 7 6 5 29 29 H 1.09001 * 109.46980 * 19.72848 * 7 6 5 30 30 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 31 31 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 33 33 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 34 34 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 35 35 H 0.96994 * 119.99598 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.47276 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47270 * 300.00251 * 21 20 19 38 38 H 1.09002 * 109.46948 * 60.00341 * 21 20 19 39 39 H 1.08001 * 120.05686 * 0.04775 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0067 6 6 3.2971 3.6821 0.0010 7 6 3.9774 5.0269 0.0015 8 7 4.4130 5.3558 -1.3623 9 6 5.4622 4.4335 -1.8167 10 6 4.8649 6.7509 -1.4486 11 6 5.0690 7.1243 -2.8942 12 1 4.8814 6.3980 -3.6712 13 6 5.4953 8.3932 -3.2249 14 7 5.7232 9.2777 -2.2787 15 14 5.7477 8.8563 -5.0169 16 1 5.4246 7.6914 -5.8794 17 1 4.8571 9.9926 -5.3647 18 1 7.1626 9.2528 -5.2311 19 6 4.0567 2.5210 0.0004 20 8 5.4136 2.5960 0.0008 21 6 6.1316 1.3605 0.0008 22 6 3.4301 1.2841 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2120 2.3187 0.0014 27 1 1.3277 4.5114 0.0120 28 1 4.8439 4.9954 0.6620 29 1 3.2797 5.7868 0.3534 30 1 5.0776 3.4136 -1.8090 31 1 5.7660 4.6993 -2.8292 32 1 6.3211 4.5030 -1.1492 33 1 4.1125 7.4045 -1.0072 34 1 5.8050 6.8623 -0.9082 35 1 6.0235 10.1702 -2.5114 36 1 7.2027 1.5628 0.0006 37 1 5.8697 0.7880 0.8905 38 1 5.8702 0.7884 -0.8895 39 1 4.0197 0.3792 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046437726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:04 Heat of formation + Delta-G solvation = -60.083363 kcal Electronic energy + Delta-G solvation = -20261.643661 eV Core-core repulsion = 17169.646050 eV Total energy + Delta-G solvation = -3091.997611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62018 -39.99503 -38.31243 -37.17324 -34.69253 -32.22022 -31.21964 -29.14274 -28.71139 -28.06753 -27.27509 -25.41857 -23.17043 -22.76323 -21.56793 -19.59214 -18.54081 -17.82037 -17.24212 -17.14634 -16.77426 -16.50412 -16.34102 -15.72535 -15.67045 -15.47395 -14.98009 -14.38139 -14.15178 -13.76163 -13.53716 -13.33678 -13.10626 -12.92509 -12.81141 -12.58480 -12.48530 -12.45136 -12.22319 -12.03826 -11.93286 -11.69432 -11.43070 -11.18774 -10.60967 -9.55290 -9.08729 -8.80904 -8.18514 -6.28904 0.38788 0.45124 1.41508 1.42109 1.56294 2.23052 2.41651 2.51670 2.71413 3.13282 3.58969 3.81240 3.98569 4.07394 4.22282 4.27045 4.41087 4.44408 4.44969 4.50379 4.61503 4.63841 4.69391 4.74590 4.80131 4.85931 4.87067 5.12055 5.17617 5.22876 5.31078 5.36657 5.55404 5.66329 5.68554 6.06724 6.32149 6.37917 6.51688 6.66326 6.87501 7.40589 8.92655 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.004421 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.229970 B = 6332.457906 C = 6753.858004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.155 3.845 4 C -0.240 4.240 5 C -0.033 4.033 6 C -0.156 4.156 7 C 0.109 3.891 8 N -0.541 5.541 9 C 0.057 3.943 10 C 0.207 3.793 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.164 3.836 20 O -0.324 6.324 21 C 0.016 3.984 22 C -0.249 4.249 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.141 0.859 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.009 0.991 33 H 0.006 0.994 34 H -0.041 1.041 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -19.841 6.024 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.109 3.891 4 C -0.259 4.259 5 C -0.052 4.052 6 C -0.157 4.157 7 C -0.019 4.019 8 N -0.265 5.265 9 C -0.091 4.091 10 C 0.080 3.920 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.203 1.203 19 C 0.117 3.883 20 O -0.238 6.238 21 C -0.079 4.079 22 C -0.268 4.268 23 H 0.081 0.919 24 H 0.140 0.860 25 H 0.085 0.915 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.024 0.976 34 H -0.023 1.023 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.120 -19.755 5.744 22.118 hybrid contribution 0.885 0.731 -0.089 1.151 sum -7.235 -19.024 5.655 21.125 Atomic orbital electron populations 1.23376 0.76214 1.05644 1.02432 1.86018 1.23658 1.26375 1.88369 1.18760 0.91590 0.84789 0.93985 1.21319 1.01220 0.91178 1.12154 1.20841 0.92247 0.98421 0.93662 1.19179 0.93848 0.92657 1.10020 1.20730 0.97657 0.93734 0.89772 1.62137 1.38770 1.03924 1.21694 1.22196 0.92139 0.96013 0.98783 1.19412 0.91805 0.84547 0.96197 1.21476 1.44109 0.97544 0.92846 0.92145 1.25924 0.95088 0.96202 1.02447 1.70098 1.47484 1.05508 1.34489 0.85309 0.77801 0.78291 0.79054 1.18872 1.20164 1.20320 1.18544 0.82917 0.92727 0.94078 1.86320 1.15210 1.34372 1.87880 1.23326 0.97351 0.84798 1.02383 1.20438 0.93241 0.97175 1.15967 0.91854 0.86047 0.91478 0.82770 0.84115 0.95915 0.90977 0.90900 0.93562 0.97252 0.97573 1.02306 0.92662 0.86952 0.91279 0.91682 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.15 10.49 -92.37 -0.97 -8.12 16 3 C 0.15 3.91 6.68 22.49 0.15 4.06 16 4 C -0.24 -5.82 9.04 22.38 0.20 -5.62 16 5 C -0.03 -0.96 9.66 22.24 0.21 -0.74 16 6 C -0.16 -5.32 5.17 -19.75 -0.10 -5.42 16 7 C 0.11 4.41 4.99 85.56 0.43 4.83 16 8 N -0.54 -25.76 4.74 -931.63 -4.42 -30.18 16 9 C 0.06 2.49 7.86 127.69 1.00 3.49 16 10 C 0.21 11.71 4.72 85.56 0.40 12.11 16 11 C -0.52 -30.93 8.46 25.60 0.22 -30.71 16 12 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 13 C 0.00 0.07 5.46 84.66 0.46 0.53 16 14 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 15 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C 0.16 5.11 5.40 22.49 0.12 5.23 16 20 O -0.32 -9.93 6.53 -92.35 -0.60 -10.53 16 21 C 0.02 0.31 9.81 113.37 1.11 1.43 16 22 C -0.25 -6.65 8.97 22.46 0.20 -6.45 16 23 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 26 H 0.15 2.75 6.29 -2.91 -0.02 2.73 16 27 H 0.14 3.71 8.03 -2.91 -0.02 3.69 16 28 H 0.02 0.96 7.83 -2.39 -0.02 0.94 16 29 H 0.07 2.85 7.79 -2.39 -0.02 2.83 16 30 H 0.07 2.86 4.99 -2.38 -0.01 2.85 16 31 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16 32 H 0.01 0.40 7.71 -2.39 -0.02 0.38 16 33 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 34 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 38 H 0.06 1.17 7.66 -2.39 -0.02 1.16 16 39 H 0.15 3.33 6.30 -2.91 -0.02 3.31 16 Total: -1.00 -71.33 316.06 2.88 -68.45 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.04 Total: 6.26 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.53 Total: -15.92 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -4.13 Total: -87.62 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.57 Total: -18.65 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.33 2.88 -68.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046437726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.368 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds