Wall clock time and date at job start Mon Mar 30 2020 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38216 * 120.01502 * 2 1 4 4 C 1.38226 * 120.02514 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.05319 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.02306 * 359.78900 * 5 4 3 7 7 C 1.50704 * 120.01152 * 180.23020 * 6 5 4 8 8 N 1.46903 * 109.47067 * 260.23554 * 7 6 5 9 9 C 1.46896 * 111.00080 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47405 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46780 * 299.99803 * 10 9 8 12 12 C 1.53008 * 109.47067 * 59.99550 * 10 9 8 13 13 C 1.50696 * 109.47118 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00274 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99808 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99567 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99894 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46861 * 60.00101 * 17 15 13 19 19 H 1.48494 * 109.46965 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47401 * 299.99960 * 17 15 13 21 21 C 1.38436 * 120.00925 * 180.02562 * 2 1 3 22 22 F 1.35104 * 120.02854 * 359.95937 * 21 2 1 23 23 H 1.08996 * 109.47195 * 269.98180 * 1 2 3 24 24 H 1.09003 * 109.47272 * 29.98277 * 1 2 3 25 25 H 1.09002 * 109.47524 * 149.97871 * 1 2 3 26 26 H 1.08002 * 119.98614 * 0.03902 * 3 2 1 27 27 H 1.08001 * 119.97063 * 179.97438 * 4 3 2 28 28 H 1.07993 * 119.98872 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47393 * 20.23497 * 7 6 5 30 30 H 1.08998 * 109.46807 * 140.24019 * 7 6 5 31 31 H 1.00904 * 111.00074 * 56.04304 * 8 7 6 32 32 H 1.09005 * 109.46904 * 299.99819 * 9 8 7 33 33 H 1.08994 * 109.47692 * 59.99570 * 9 8 7 34 34 H 1.08999 * 109.47505 * 59.99882 * 11 10 9 35 35 H 1.09007 * 109.47200 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47257 * 299.99672 * 11 10 9 37 37 H 1.08997 * 109.47282 * 60.00040 * 12 10 9 38 38 H 1.08998 * 109.46796 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.46728 * 300.00450 * 12 10 9 40 40 H 0.97007 * 119.99186 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 3.5842 -1.1973 0.0044 7 6 4.3394 -2.5014 0.0096 8 7 4.3814 -3.0484 -1.3531 9 6 5.1110 -4.3229 -1.3865 10 6 5.1341 -4.8601 -2.8190 11 6 3.6999 -5.0806 -3.3040 12 6 5.8313 -3.8491 -3.7316 13 6 5.8831 -6.1672 -2.8533 14 1 6.3013 -6.5740 -1.9445 15 6 6.0345 -6.8439 -4.0451 16 7 5.5248 -6.3487 -5.1517 17 14 6.9636 -8.4639 -4.0878 18 1 6.2882 -9.4453 -3.2013 19 1 6.9847 -8.9858 -5.4778 20 1 8.3558 -8.2487 -3.6181 21 6 2.1993 -1.1988 -0.0005 22 9 1.5246 -2.3693 -0.0002 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6584 2.1321 0.0006 27 1 4.1200 2.1327 -0.0010 28 1 5.3532 0.0018 -0.0005 29 1 5.3559 -2.3312 0.3643 30 1 3.8379 -3.2090 0.6698 31 1 4.7838 -2.3840 -1.9972 32 1 6.1330 -4.1657 -1.0414 33 1 4.6147 -5.0430 -0.7361 34 1 3.1584 -4.1349 -3.2792 35 1 3.7162 -5.4629 -4.3247 36 1 3.2031 -5.8008 -2.6538 37 1 6.8530 -3.6919 -3.3861 38 1 5.8473 -4.2316 -4.7522 39 1 5.2898 -2.9034 -3.7067 40 1 5.6317 -6.8247 -5.9902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459659871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:13 Heat of formation + Delta-G solvation = -34.505370 kcal Electronic energy + Delta-G solvation = -20101.038046 eV Core-core repulsion = 17022.522369 eV Total energy + Delta-G solvation = -3078.515677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.63846 -39.24106 -36.90615 -34.46884 -32.64080 -31.32026 -29.94618 -27.08638 -25.75723 -25.52294 -25.14210 -23.11611 -21.90112 -20.87184 -18.43303 -17.39944 -16.59862 -15.96857 -15.53181 -15.44617 -14.86593 -14.44541 -14.03833 -13.84598 -13.44095 -13.41925 -13.13055 -12.77212 -12.56904 -12.41264 -12.10978 -11.82694 -11.78852 -11.28609 -11.12636 -10.96065 -10.89825 -10.61791 -10.54506 -10.14616 -10.02715 -9.34890 -9.11215 -8.79340 -8.59878 -8.53248 -8.25864 -7.69289 -5.88172 -3.98633 1.15936 1.19628 3.34694 3.39411 3.41981 3.53468 4.34584 4.46220 4.62495 4.69504 4.79915 5.09053 5.11107 5.30345 5.37092 5.37600 5.47339 5.59341 5.70084 5.85124 6.02037 6.11967 6.22792 6.29156 6.34157 6.38888 6.45960 6.74599 6.90897 6.92766 7.10981 7.20098 7.43037 7.50626 7.73457 7.78972 7.86131 7.98159 8.24286 8.37849 8.58783 9.02489 9.66047 11.12311 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036111 B = 0.004086 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.190891 B = 6851.479771 C = 7073.409612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.131 4.131 5 C -0.094 4.094 6 C -0.107 4.107 7 C 0.096 3.904 8 N -0.679 5.679 9 C 0.076 3.924 10 C 0.069 3.931 11 C -0.118 4.118 12 C -0.132 4.132 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.123 3.877 22 F -0.128 7.128 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.338 0.662 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.083 0.917 39 H 0.010 0.990 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 14.952 9.999 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.149 4.149 5 C -0.113 4.113 6 C -0.108 4.108 7 C -0.033 4.033 8 N -0.311 5.311 9 C -0.052 4.052 10 C 0.068 3.932 11 C -0.176 4.176 12 C -0.189 4.189 13 C -0.546 4.546 14 H 0.069 0.931 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.205 1.205 21 C 0.103 3.897 22 F -0.106 7.106 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.472 14.530 9.845 18.707 hybrid contribution 1.417 -0.801 0.079 1.630 sum -5.055 13.729 9.925 17.679 Atomic orbital electron populations 1.20703 0.90357 1.03348 1.02503 1.19945 0.96947 0.92061 1.03851 1.20849 0.94147 0.96769 0.99928 1.21103 0.94181 0.98062 1.01580 1.20965 1.00077 0.91189 0.99040 1.20032 0.92175 0.96562 1.02027 1.20803 0.97091 0.91812 0.93584 1.60633 1.59184 1.06691 1.04598 1.22180 0.93279 0.88669 1.01100 1.18091 0.93712 0.93363 0.87990 1.21631 0.96076 0.97440 1.02474 1.21830 0.96793 0.95964 1.04355 1.21069 1.34343 1.05278 0.93893 0.93061 1.24884 0.95573 0.97371 0.95719 1.69833 1.45205 1.38543 0.98749 0.86715 0.80365 0.84311 0.76885 1.20402 1.21369 1.20494 1.17356 0.89432 0.81023 1.01920 1.91510 1.79909 1.45783 1.93387 0.91095 0.91172 0.91031 0.85472 0.85627 0.85397 0.94637 0.90406 0.84260 0.96807 0.92449 0.96134 0.90776 0.96296 0.96241 0.89825 0.97091 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.84 36.00 0.35 -0.75 16 2 C -0.13 -1.54 5.89 -104.56 -0.62 -2.15 16 3 C -0.10 -1.01 9.70 -39.59 -0.38 -1.39 16 4 C -0.13 -1.33 10.04 -39.58 -0.40 -1.73 16 5 C -0.09 -1.11 9.67 -39.59 -0.38 -1.49 16 6 C -0.11 -1.52 5.40 -104.55 -0.56 -2.08 16 7 C 0.10 1.51 5.54 -4.97 -0.03 1.48 16 8 N -0.68 -12.72 5.70 -115.06 -0.66 -13.37 16 9 C 0.08 1.63 4.59 -3.83 -0.02 1.61 16 10 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 11 C -0.12 -2.99 8.09 37.16 0.30 -2.69 16 12 C -0.13 -3.16 7.92 37.16 0.29 -2.87 16 13 C -0.51 -13.85 8.01 -34.44 -0.28 -14.13 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 15 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 16 N -0.88 -24.81 9.35 55.43 0.52 -24.29 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.12 1.80 7.19 -39.42 -0.28 1.52 16 22 F -0.13 -2.12 15.88 2.25 0.04 -2.08 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 26 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 29 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 30 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 31 H 0.34 6.27 6.76 -39.29 -0.27 6.00 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 35 H 0.07 2.03 6.07 -51.92 -0.32 1.72 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 39 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -28.70 325.05 -8.60 -37.31 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.20 Total: 2.59 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.18 Total: -21.36 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.66 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.70 -8.60 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459659871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.802 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds