Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38216 * 120.01502 * 2 1 4 4 C 1.38226 * 120.02514 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.05319 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.02306 * 359.78900 * 5 4 3 7 7 C 1.50704 * 120.01152 * 180.23020 * 6 5 4 8 8 N 1.46903 * 109.47067 * 260.23554 * 7 6 5 9 9 C 1.46896 * 111.00080 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47405 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46780 * 299.99803 * 10 9 8 12 12 C 1.53008 * 109.47067 * 59.99550 * 10 9 8 13 13 C 1.50696 * 109.47118 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00274 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99808 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99567 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99894 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46861 * 60.00101 * 17 15 13 19 19 H 1.48494 * 109.46965 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47401 * 299.99960 * 17 15 13 21 21 C 1.38436 * 120.00925 * 180.02562 * 2 1 3 22 22 F 1.35104 * 120.02854 * 359.95937 * 21 2 1 23 23 H 1.08996 * 109.47195 * 269.98180 * 1 2 3 24 24 H 1.09003 * 109.47272 * 29.98277 * 1 2 3 25 25 H 1.09002 * 109.47524 * 149.97871 * 1 2 3 26 26 H 1.08002 * 119.98614 * 0.03902 * 3 2 1 27 27 H 1.08001 * 119.97063 * 179.97438 * 4 3 2 28 28 H 1.07993 * 119.98872 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47393 * 20.23497 * 7 6 5 30 30 H 1.08998 * 109.46807 * 140.24019 * 7 6 5 31 31 H 1.00904 * 111.00074 * 56.04304 * 8 7 6 32 32 H 1.09005 * 109.46904 * 299.99819 * 9 8 7 33 33 H 1.08994 * 109.47692 * 59.99570 * 9 8 7 34 34 H 1.08999 * 109.47505 * 59.99882 * 11 10 9 35 35 H 1.09007 * 109.47200 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47257 * 299.99672 * 11 10 9 37 37 H 1.08997 * 109.47282 * 60.00040 * 12 10 9 38 38 H 1.08998 * 109.46796 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.46728 * 300.00450 * 12 10 9 40 40 H 0.97007 * 119.99186 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 3.5842 -1.1973 0.0044 7 6 4.3394 -2.5014 0.0096 8 7 4.3814 -3.0484 -1.3531 9 6 5.1110 -4.3229 -1.3865 10 6 5.1341 -4.8601 -2.8190 11 6 3.6999 -5.0806 -3.3040 12 6 5.8313 -3.8491 -3.7316 13 6 5.8831 -6.1672 -2.8533 14 1 6.3013 -6.5740 -1.9445 15 6 6.0345 -6.8439 -4.0451 16 7 5.5248 -6.3487 -5.1517 17 14 6.9636 -8.4639 -4.0878 18 1 6.2882 -9.4453 -3.2013 19 1 6.9847 -8.9858 -5.4778 20 1 8.3558 -8.2487 -3.6181 21 6 2.1993 -1.1988 -0.0005 22 9 1.5246 -2.3693 -0.0002 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6584 2.1321 0.0006 27 1 4.1200 2.1327 -0.0010 28 1 5.3532 0.0018 -0.0005 29 1 5.3559 -2.3312 0.3643 30 1 3.8379 -3.2090 0.6698 31 1 4.7838 -2.3840 -1.9972 32 1 6.1330 -4.1657 -1.0414 33 1 4.6147 -5.0430 -0.7361 34 1 3.1584 -4.1349 -3.2792 35 1 3.7162 -5.4629 -4.3247 36 1 3.2031 -5.8008 -2.6538 37 1 6.8530 -3.6919 -3.3861 38 1 5.8473 -4.2316 -4.7522 39 1 5.2898 -2.9034 -3.7067 40 1 5.6317 -6.8247 -5.9902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459659871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -49.471048 kcal Electronic energy + Delta-G solvation = -20101.687006 eV Core-core repulsion = 17022.522369 eV Total energy + Delta-G solvation = -3079.164637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.76994 -40.17959 -38.61546 -35.97936 -33.89748 -32.80902 -31.27959 -27.95059 -27.52576 -27.29631 -27.02994 -24.69967 -22.81920 -21.89018 -20.36373 -18.41985 -17.93332 -17.61285 -16.94377 -16.64814 -16.30355 -15.90065 -15.52462 -15.18314 -14.67909 -14.33686 -14.22021 -14.17286 -14.00535 -13.89096 -13.56979 -13.12924 -12.99074 -12.88302 -12.69487 -12.55303 -12.48305 -12.22517 -12.12155 -12.06554 -11.83389 -11.33365 -10.98382 -10.62756 -10.34880 -9.72900 -9.48701 -9.19563 -7.96861 -6.14175 0.25314 0.28376 1.43533 1.44429 1.51404 2.46222 2.63648 3.25069 3.41453 3.48633 3.72435 3.81385 4.07449 4.30466 4.37442 4.38573 4.50632 4.58857 4.65669 4.75573 4.78758 4.85214 4.91379 5.00606 5.14063 5.15073 5.26363 5.27333 5.35618 5.40063 5.44873 5.50793 5.51309 5.68903 5.74577 6.02001 6.12348 6.21175 6.31342 6.46993 6.59971 6.94473 7.53250 9.01369 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036111 B = 0.004086 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.190891 B = 6851.479771 C = 7073.409612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.134 4.134 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.125 4.125 7 C 0.100 3.900 8 N -0.684 5.684 9 C 0.091 3.909 10 C 0.059 3.941 11 C -0.104 4.104 12 C -0.119 4.119 13 C -0.528 4.528 14 H 0.045 0.955 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.085 3.915 22 F -0.150 7.150 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.162 0.838 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.340 0.660 32 H 0.016 0.984 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 17.171 10.701 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.135 4.135 3 C -0.111 4.111 4 C -0.140 4.140 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.028 4.028 8 N -0.317 5.317 9 C -0.038 4.038 10 C 0.059 3.941 11 C -0.162 4.162 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.064 0.936 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.066 3.934 22 F -0.129 7.129 23 H 0.101 0.899 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.179 0.821 27 H 0.178 0.822 28 H 0.162 0.838 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.152 16.760 10.559 20.742 hybrid contribution 1.281 -1.390 -0.112 1.893 sum -4.872 15.369 10.447 19.212 Atomic orbital electron populations 1.20757 0.89081 1.03665 1.03363 1.20285 0.98139 0.91815 1.03251 1.21298 0.94499 0.97258 0.98027 1.21533 0.94392 0.98707 0.99389 1.21218 1.00997 0.90914 0.98581 1.19975 0.92067 0.96551 1.04066 1.20748 0.98069 0.92550 0.91457 1.60516 1.58591 1.05892 1.06653 1.21834 0.93571 0.89816 0.98585 1.18147 0.92838 0.93017 0.90115 1.21460 0.96792 0.97286 1.00629 1.21642 0.97104 0.96535 1.02383 1.21391 1.34848 1.06644 0.93818 0.93627 1.25554 0.96377 1.00267 0.95478 1.69968 1.45797 1.39500 0.98990 0.85800 0.79324 0.80711 0.76856 1.20260 1.21026 1.19893 1.17797 0.90006 0.81290 1.04344 1.91444 1.80369 1.47178 1.93896 0.89936 0.88796 0.92734 0.82057 0.82225 0.83835 0.93134 0.91722 0.84033 0.96625 0.93649 0.95281 0.93143 0.97397 0.96084 0.92526 0.95025 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.84 71.24 0.70 -1.31 16 2 C -0.13 -3.01 5.89 -19.82 -0.12 -3.13 16 3 C -0.09 -1.56 9.70 22.26 0.22 -1.35 16 4 C -0.12 -2.02 10.04 22.27 0.22 -1.79 16 5 C -0.10 -2.08 9.67 22.26 0.22 -1.87 16 6 C -0.13 -3.46 5.40 -19.82 -0.11 -3.57 16 7 C 0.10 3.13 5.54 85.56 0.47 3.60 16 8 N -0.68 -25.50 5.70 -517.93 -2.95 -28.45 16 9 C 0.09 3.91 4.59 86.30 0.40 4.30 16 10 C 0.06 2.96 0.57 -52.93 -0.03 2.93 16 11 C -0.10 -5.34 8.09 71.98 0.58 -4.76 16 12 C -0.12 -5.69 7.92 71.98 0.57 -5.12 16 13 C -0.53 -29.14 8.01 25.60 0.21 -28.93 16 14 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 15 C 0.02 1.23 5.15 84.66 0.44 1.67 16 16 N -0.90 -51.28 9.35 21.45 0.20 -51.08 16 17 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.09 2.49 7.19 22.38 0.16 2.65 16 22 F -0.15 -5.18 15.88 44.97 0.71 -4.47 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 25 H 0.05 1.16 7.64 -2.39 -0.02 1.14 16 26 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.14 2.50 8.04 -2.91 -0.02 2.48 16 29 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 30 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 31 H 0.34 12.31 6.76 -89.69 -0.61 11.71 16 32 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 35 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 39 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 40 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -62.40 325.05 4.33 -58.07 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.42 Total: 16.69 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.93 Total: -36.68 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.75 Total: -79.54 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.71 Total: -4.47 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.40 4.33 -58.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459659871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.597 kcal (2) G-P(sol) polarization free energy of solvation -62.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds