Wall clock time and date at job start Mon Mar 30 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.86842 * 2 1 4 4 C 1.54097 * 109.88091 * 238.83858 * 2 1 3 5 5 C 1.54818 * 104.18808 * 242.60655 * 4 2 1 6 6 C 1.55000 * 102.09030 * 20.87976 * 5 4 2 7 7 H 1.08997 * 110.62057 * 81.47966 * 6 5 4 8 8 C 1.52998 * 110.61526 * 204.47771 * 6 5 4 9 9 N 1.46504 * 109.47188 * 180.52047 * 8 6 5 10 10 C 1.35313 * 125.86405 * 124.71227 * 9 8 6 11 11 C 1.35355 * 106.17152 * 179.90961 * 10 9 8 12 12 C 1.50698 * 126.75092 * 180.12573 * 11 10 9 13 13 C 1.50704 * 109.47076 * 125.24294 * 12 11 10 14 14 H 1.08001 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00110 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47149 * 89.99864 * 17 15 13 19 19 H 1.48500 * 109.46973 * 210.00064 * 17 15 13 20 20 H 1.48501 * 109.47064 * 329.99752 * 17 15 13 21 21 N 1.33773 * 106.49858 * 0.35204 * 11 10 9 22 22 N 1.28639 * 108.88153 * 359.77296 * 21 11 10 23 23 O 1.43745 * 109.87911 * 121.00481 * 2 1 3 24 24 H 1.08999 * 109.47136 * 300.44401 * 1 2 3 25 25 H 1.08995 * 109.47401 * 60.44670 * 1 2 3 26 26 H 1.09004 * 109.47091 * 180.44673 * 1 2 3 27 27 H 1.09003 * 109.47217 * 179.55387 * 3 2 1 28 28 H 1.09003 * 109.47587 * 299.55304 * 3 2 1 29 29 H 1.09003 * 109.47898 * 59.55270 * 3 2 1 30 30 H 1.09004 * 110.48577 * 1.27936 * 4 2 1 31 31 H 1.08989 * 110.49279 * 123.79451 * 4 2 1 32 32 H 1.08996 * 110.90598 * 139.07645 * 5 4 2 33 33 H 1.09001 * 110.90139 * 262.64748 * 5 4 2 34 34 H 1.09001 * 109.47249 * 300.52566 * 8 6 5 35 35 H 1.09000 * 109.47244 * 60.52223 * 8 6 5 36 36 H 1.08004 * 126.91753 * 0.02562 * 10 9 8 37 37 H 1.08991 * 109.47389 * 245.24700 * 12 11 10 38 38 H 1.09005 * 109.47290 * 5.24905 * 12 11 10 39 39 H 0.97003 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4389 0.0000 4 6 2.0540 -0.7499 -1.2400 5 6 2.8325 -1.9534 -0.6549 6 6 2.2280 -2.0703 0.7676 7 1 1.2813 -2.6098 0.7392 8 6 3.2126 -2.7566 1.7166 9 7 2.6121 -2.8651 3.0485 10 6 2.4580 -4.0070 3.7579 11 6 1.8665 -3.6506 4.9221 12 6 1.4846 -4.5660 6.0567 13 6 2.1090 -4.0689 7.3350 14 1 2.7207 -3.1789 7.3268 15 6 1.8992 -4.7502 8.5151 16 7 1.1547 -5.8343 8.5251 17 14 2.6725 -4.1337 10.0998 18 1 1.7430 -3.1888 10.7693 19 1 2.9419 -5.2841 10.9994 20 1 3.9476 -3.4381 9.7905 21 7 1.6829 -2.3268 4.8652 22 7 2.1355 -1.8916 3.7424 23 8 2.0188 -0.6963 1.1587 24 1 -0.3633 0.5207 0.8860 25 1 -0.3634 0.5068 -0.8939 26 1 -0.3633 -1.0277 0.0080 27 1 3.1399 1.4313 0.0080 28 1 1.6968 1.9529 -0.8940 29 1 1.6837 1.9577 0.8859 30 1 1.2237 -1.0956 -1.8559 31 1 2.7178 -0.1096 -1.8209 32 1 2.6432 -2.8574 -1.2335 33 1 3.9004 -1.7400 -0.6080 34 1 3.4452 -3.7529 1.3405 35 1 4.1283 -2.1684 1.7777 36 1 2.7500 -5.0023 3.4568 37 1 0.4000 -4.5795 6.1633 38 1 1.8416 -5.5741 5.8461 39 1 1.0068 -6.3135 9.3555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603237550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:59 Heat of formation + Delta-G solvation = 39.805593 kcal Electronic energy + Delta-G solvation = -20028.781553 eV Core-core repulsion = 16973.408203 eV Total energy + Delta-G solvation = -3055.373350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38251 -40.09977 -35.07900 -33.36546 -32.79807 -32.05749 -30.92473 -28.58570 -27.57299 -27.20244 -24.38319 -23.32286 -21.80286 -21.05176 -20.24924 -19.91397 -17.07601 -16.60176 -16.20491 -15.84953 -15.36316 -14.64669 -14.47869 -14.16287 -13.95004 -13.74753 -13.33212 -12.90540 -12.54389 -12.44719 -12.26377 -12.02036 -11.92896 -11.75870 -11.59221 -11.45294 -11.01078 -10.84571 -10.83960 -10.67735 -10.54445 -9.98729 -9.79965 -9.61181 -9.33842 -9.17618 -8.37404 -8.02441 -5.93978 -3.94026 2.35327 2.84228 3.40844 3.45689 3.49596 3.52939 3.64050 4.15589 4.33957 4.49937 4.55715 4.58319 4.69657 4.86185 4.94748 5.04678 5.09705 5.29577 5.32783 5.38943 5.42629 5.43305 5.46611 5.63101 5.67595 5.69665 5.78855 5.95009 6.00643 6.09566 6.19307 6.43197 6.86673 7.23096 7.30251 7.59593 7.69459 8.04249 8.43956 9.09721 9.47004 9.68562 11.17234 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039786 B = 0.003711 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.601711 B = 7543.430922 C = 7770.776165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.147 4.147 6 C 0.066 3.934 7 H 0.075 0.925 8 C 0.129 3.871 9 N -0.305 5.305 10 C -0.093 4.093 11 C 0.034 3.966 12 C 0.092 3.908 13 C -0.501 4.501 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.269 5.269 22 N -0.080 5.080 23 O -0.335 6.335 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.179 0.821 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 7.049 -23.771 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 C -0.199 4.199 4 C -0.182 4.182 5 C -0.185 4.185 6 C 0.007 3.993 7 H 0.093 0.907 8 C 0.006 3.994 9 N -0.101 5.101 10 C -0.241 4.241 11 C -0.103 4.103 12 C 0.054 3.946 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.136 5.136 22 N -0.059 5.059 23 O -0.254 6.254 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.197 0.803 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.999 8.525 -23.404 25.088 hybrid contribution 0.622 -1.087 0.482 1.342 sum 3.621 7.438 -22.922 24.369 Atomic orbital electron populations 1.22250 0.94911 1.02383 1.02488 1.22127 0.93806 0.93440 0.85278 1.21872 1.01584 0.93991 1.02426 1.23028 1.00375 0.96945 0.97900 1.23121 1.01026 0.99195 0.95194 1.23332 0.97707 0.85826 0.92458 0.90670 1.21955 0.96400 1.02824 0.78183 1.47095 1.41804 1.06288 1.14924 1.23350 1.12076 0.92834 0.95812 1.22998 0.98916 0.92184 0.96189 1.17710 0.97556 0.91373 0.87998 1.21066 1.30380 1.10730 0.91813 0.92284 1.24971 0.95453 0.94992 0.99040 1.69949 1.39010 1.17800 1.27195 0.86513 0.79730 0.78199 0.83115 1.20565 1.21335 1.19939 1.75119 1.17859 1.10910 1.09740 1.78389 1.12820 1.14450 1.00195 1.89189 1.85723 1.18634 1.31887 0.91494 0.91868 0.92528 0.91987 0.91582 0.91571 0.90534 0.90220 0.89842 0.89966 0.86922 0.88302 0.80342 0.94407 0.94653 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.60 37.16 0.32 -1.28 16 2 C 0.09 0.93 1.19 -90.05 -0.11 0.83 16 3 C -0.14 -1.27 8.68 37.15 0.32 -0.95 16 4 C -0.14 -1.05 6.28 -25.20 -0.16 -1.21 16 5 C -0.15 -1.04 6.59 -24.72 -0.16 -1.20 16 6 C 0.07 0.71 3.47 -25.68 -0.09 0.62 16 7 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 8 C 0.13 1.46 6.23 -4.04 -0.03 1.44 16 9 N -0.31 -5.35 3.44 -61.26 -0.21 -5.56 16 10 C -0.09 -1.76 11.49 -17.04 -0.20 -1.95 16 11 C 0.03 0.81 6.44 -82.78 -0.53 0.28 16 12 C 0.09 2.49 5.55 -29.03 -0.16 2.33 16 13 C -0.50 -14.86 9.09 -34.44 -0.31 -15.17 16 14 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 17 Si 0.90 22.57 29.54 -169.99 -5.02 17.54 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 N -0.27 -6.76 12.40 33.29 0.41 -6.35 16 22 N -0.08 -1.74 12.22 60.35 0.74 -1.00 16 23 O -0.34 -4.56 9.75 -35.23 -0.34 -4.91 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 31 H 0.08 0.48 7.70 -51.94 -0.40 0.08 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.11 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.18 2.64 8.06 -52.48 -0.42 2.22 16 37 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -35.37 326.16 -6.22 -41.59 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -6.25 Total: -5.09 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.20 Total: -14.73 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.68 Total: -39.33 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.34 Total: -4.91 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.37 -6.22 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603237550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.396 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds