Wall clock time and date at job start Mon Mar 30 2020 00:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.86842 * 2 1 4 4 C 1.54097 * 109.88091 * 238.83858 * 2 1 3 5 5 C 1.54818 * 104.18808 * 242.60655 * 4 2 1 6 6 C 1.55000 * 102.09030 * 20.87976 * 5 4 2 7 7 H 1.08997 * 110.62057 * 81.47966 * 6 5 4 8 8 C 1.52998 * 110.61526 * 204.47771 * 6 5 4 9 9 N 1.46504 * 109.47188 * 180.52047 * 8 6 5 10 10 C 1.35313 * 125.86405 * 124.71227 * 9 8 6 11 11 C 1.35355 * 106.17152 * 179.90961 * 10 9 8 12 12 C 1.50698 * 126.75092 * 180.12573 * 11 10 9 13 13 C 1.50704 * 109.47076 * 125.24294 * 12 11 10 14 14 H 1.08001 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00110 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47149 * 89.99864 * 17 15 13 19 19 H 1.48500 * 109.46973 * 210.00064 * 17 15 13 20 20 H 1.48501 * 109.47064 * 329.99752 * 17 15 13 21 21 N 1.33773 * 106.49858 * 0.35204 * 11 10 9 22 22 N 1.28639 * 108.88153 * 359.77296 * 21 11 10 23 23 O 1.43745 * 109.87911 * 121.00481 * 2 1 3 24 24 H 1.08999 * 109.47136 * 300.44401 * 1 2 3 25 25 H 1.08995 * 109.47401 * 60.44670 * 1 2 3 26 26 H 1.09004 * 109.47091 * 180.44673 * 1 2 3 27 27 H 1.09003 * 109.47217 * 179.55387 * 3 2 1 28 28 H 1.09003 * 109.47587 * 299.55304 * 3 2 1 29 29 H 1.09003 * 109.47898 * 59.55270 * 3 2 1 30 30 H 1.09004 * 110.48577 * 1.27936 * 4 2 1 31 31 H 1.08989 * 110.49279 * 123.79451 * 4 2 1 32 32 H 1.08996 * 110.90598 * 139.07645 * 5 4 2 33 33 H 1.09001 * 110.90139 * 262.64748 * 5 4 2 34 34 H 1.09001 * 109.47249 * 300.52566 * 8 6 5 35 35 H 1.09000 * 109.47244 * 60.52223 * 8 6 5 36 36 H 1.08004 * 126.91753 * 0.02562 * 10 9 8 37 37 H 1.08991 * 109.47389 * 245.24700 * 12 11 10 38 38 H 1.09005 * 109.47290 * 5.24905 * 12 11 10 39 39 H 0.97003 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4389 0.0000 4 6 2.0540 -0.7499 -1.2400 5 6 2.8325 -1.9534 -0.6549 6 6 2.2280 -2.0703 0.7676 7 1 1.2813 -2.6098 0.7392 8 6 3.2126 -2.7566 1.7166 9 7 2.6121 -2.8651 3.0485 10 6 2.4580 -4.0070 3.7579 11 6 1.8665 -3.6506 4.9221 12 6 1.4846 -4.5660 6.0567 13 6 2.1090 -4.0689 7.3350 14 1 2.7207 -3.1789 7.3268 15 6 1.8992 -4.7502 8.5151 16 7 1.1547 -5.8343 8.5251 17 14 2.6725 -4.1337 10.0998 18 1 1.7430 -3.1888 10.7693 19 1 2.9419 -5.2841 10.9994 20 1 3.9476 -3.4381 9.7905 21 7 1.6829 -2.3268 4.8652 22 7 2.1355 -1.8916 3.7424 23 8 2.0188 -0.6963 1.1587 24 1 -0.3633 0.5207 0.8860 25 1 -0.3634 0.5068 -0.8939 26 1 -0.3633 -1.0277 0.0080 27 1 3.1399 1.4313 0.0080 28 1 1.6968 1.9529 -0.8940 29 1 1.6837 1.9577 0.8859 30 1 1.2237 -1.0956 -1.8559 31 1 2.7178 -0.1096 -1.8209 32 1 2.6432 -2.8574 -1.2335 33 1 3.9004 -1.7400 -0.6080 34 1 3.4452 -3.7529 1.3405 35 1 4.1283 -2.1684 1.7777 36 1 2.7500 -5.0023 3.4568 37 1 0.4000 -4.5795 6.1633 38 1 1.8416 -5.5741 5.8461 39 1 1.0068 -6.3135 9.3555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603237550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:58 Heat of formation + Delta-G solvation = 15.626312 kcal Electronic energy + Delta-G solvation = -20029.830046 eV Core-core repulsion = 16973.408203 eV Total energy + Delta-G solvation = -3056.421842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.97297 -40.87162 -36.37005 -35.27957 -33.83221 -33.04148 -32.70666 -29.79725 -28.98960 -28.31389 -25.48150 -25.23974 -22.71521 -22.47202 -21.42564 -21.00731 -18.56617 -18.04612 -17.67677 -17.02264 -16.53344 -16.22739 -15.68880 -15.52754 -14.86022 -14.59216 -14.47191 -14.28619 -14.01318 -13.73114 -13.45645 -13.12890 -12.98584 -12.87349 -12.68118 -12.61747 -12.48172 -12.39585 -12.17364 -11.83316 -11.65593 -11.57664 -11.52429 -11.33216 -10.81446 -10.59658 -10.56560 -9.80403 -8.18619 -6.27224 0.83582 1.39646 1.42298 1.52713 1.62333 1.82808 2.44796 2.79219 3.13900 3.40367 3.62110 3.69014 3.87757 3.91131 3.94614 4.16368 4.20059 4.34500 4.39622 4.42099 4.52583 4.64510 4.69029 4.76329 4.85225 4.91803 4.94014 4.97264 5.08981 5.18515 5.26400 5.31287 5.37286 5.47973 5.56219 5.77224 5.89715 6.12542 6.23958 6.80878 7.39303 7.81012 8.92391 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039786 B = 0.003711 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.601711 B = 7543.430922 C = 7770.776165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.134 4.134 6 C 0.059 3.941 7 H 0.062 0.938 8 C 0.114 3.886 9 N -0.285 5.285 10 C -0.059 4.059 11 C -0.012 4.012 12 C 0.103 3.897 13 C -0.524 4.524 14 H 0.042 0.958 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.277 1.277 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.320 5.320 22 N -0.098 5.098 23 O -0.377 6.377 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.111 0.889 36 H 0.227 0.773 37 H 0.005 0.995 38 H 0.035 0.965 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 6.510 -26.160 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.197 4.197 4 C -0.177 4.177 5 C -0.172 4.172 6 C 0.000 4.000 7 H 0.080 0.920 8 C -0.005 4.005 9 N -0.081 5.081 10 C -0.208 4.208 11 C -0.150 4.150 12 C 0.065 3.935 13 C -0.563 4.563 14 H 0.060 0.940 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.787 3.213 18 H -0.202 1.202 19 H -0.197 1.197 20 H -0.196 1.196 21 N -0.187 5.187 22 N -0.077 5.077 23 O -0.297 6.297 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.179 0.821 35 H 0.129 0.871 36 H 0.244 0.756 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.792 8.012 -25.831 27.466 hybrid contribution 0.060 -0.902 1.095 1.419 sum 4.852 7.110 -24.736 26.191 Atomic orbital electron populations 1.22257 0.95459 1.01790 1.02407 1.22376 0.93559 0.94012 0.85849 1.21885 1.01633 0.93658 1.02510 1.23020 1.01090 0.96943 0.96604 1.23114 1.01410 1.00194 0.92433 1.23456 0.97355 0.84618 0.94551 0.92001 1.22693 0.96523 1.06162 0.75165 1.47563 1.39441 1.04958 1.16178 1.23803 1.08640 0.94705 0.93668 1.22699 1.02589 0.91977 0.97738 1.17368 0.95307 0.92090 0.88761 1.21284 1.30846 1.10469 0.93670 0.93954 1.25791 0.95777 0.95073 1.02318 1.70038 1.39675 1.18615 1.28388 0.85491 0.78768 0.78073 0.78947 1.20230 1.19659 1.19645 1.75023 1.19923 1.11938 1.11813 1.78276 1.13858 1.15619 0.99904 1.89161 1.86069 1.20177 1.34267 0.94130 0.89413 0.93281 0.91804 0.89161 0.93876 0.89395 0.88510 0.87284 0.88627 0.82053 0.87091 0.75626 0.97676 0.94664 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.60 71.98 0.62 -2.53 16 2 C 0.08 1.53 1.19 -10.43 -0.01 1.52 16 3 C -0.14 -2.38 8.68 71.98 0.62 -1.76 16 4 C -0.14 -1.55 6.28 31.59 0.20 -1.35 16 5 C -0.13 -1.34 6.59 31.90 0.21 -1.13 16 6 C 0.06 1.14 3.47 31.28 0.11 1.25 16 7 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 8 C 0.11 2.22 6.23 86.38 0.54 2.75 16 9 N -0.29 -9.58 3.44 -347.72 -1.20 -10.78 16 10 C -0.06 -2.12 11.49 83.49 0.96 -1.16 16 11 C -0.01 -0.59 6.44 41.60 0.27 -0.32 16 12 C 0.10 5.79 5.55 29.10 0.16 5.95 16 13 C -0.52 -32.05 9.09 25.60 0.23 -31.82 16 14 H 0.04 2.67 7.74 -2.91 -0.02 2.64 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 17 Si 0.96 46.73 29.54 68.60 2.03 48.76 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 21 N -0.32 -16.71 12.40 -48.60 -0.60 -17.31 16 22 N -0.10 -4.32 12.22 37.02 0.45 -3.87 16 23 O -0.38 -10.05 9.75 -148.98 -1.45 -11.50 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.79 7.70 -2.39 -0.02 0.78 16 31 H 0.10 0.78 7.70 -2.39 -0.02 0.76 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.75 8.06 -2.39 -0.02 0.73 16 34 H 0.16 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.04 1.91 8.12 -2.38 -0.02 1.89 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -81.39 326.16 4.90 -76.49 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.02 Total: 2.21 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.37 Total: -27.63 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -1.06 Total: -88.33 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.45 Total: -11.50 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -81.39 4.90 -76.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603237550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.121 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds