Wall clock time and date at job start Mon Mar 30 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51278 * 137.67493 * 2 1 4 4 N 1.47132 * 87.70221 * 205.78549 * 3 2 1 5 5 C 1.34771 * 136.18913 * 153.54799 * 4 3 2 6 6 O 1.21591 * 119.99799 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00525 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00365 * 179.97438 * 7 5 4 9 9 C 1.53039 * 109.46176 * 205.00294 * 8 7 5 10 10 C 1.53194 * 109.31339 * 178.61625 * 9 8 7 11 11 N 1.46929 * 108.77338 * 54.63818 * 10 9 8 12 12 C 1.36938 * 120.63009 * 126.37152 * 11 10 9 13 13 H 1.08000 * 119.99931 * 332.58030 * 12 11 10 14 14 C 1.38817 * 119.99746 * 152.58291 * 12 11 10 15 15 N 1.31612 * 120.00092 * 342.50375 * 14 12 11 16 16 Si 1.86798 * 119.99583 * 162.77719 * 14 12 11 17 17 H 1.48500 * 109.47109 * 60.00223 * 16 14 12 18 18 H 1.48508 * 109.46991 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47656 * 299.99742 * 16 14 12 20 20 C 1.46929 * 118.73866 * 306.64350 * 11 10 9 21 21 C 1.52760 * 109.00960 * 53.30862 * 20 11 10 22 22 C 1.47129 * 87.62527 * 333.81231 * 4 3 2 23 23 H 1.07996 * 119.99832 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99911 * 179.97438 * 1 2 3 25 25 H 1.09001 * 113.50993 * 91.08168 * 3 2 1 26 26 H 1.08997 * 113.57620 * 320.50392 * 3 2 1 27 27 H 0.97010 * 119.99743 * 0.02562 * 7 5 4 28 28 H 1.08994 * 109.45528 * 324.97473 * 8 7 5 29 29 H 1.09000 * 109.49989 * 58.66741 * 9 8 7 30 30 H 1.09006 * 109.50021 * 298.56616 * 9 8 7 31 31 H 1.08997 * 109.58900 * 294.85354 * 10 9 8 32 32 H 1.08997 * 109.70721 * 174.49177 * 10 9 8 33 33 H 0.97003 * 120.00017 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.58872 * 173.15048 * 20 11 10 35 35 H 1.09003 * 109.58399 * 293.56745 * 20 11 10 36 36 H 1.08994 * 109.56594 * 185.55179 * 21 20 11 37 37 H 1.09001 * 109.38476 * 65.51623 * 21 20 11 38 38 H 1.08999 * 113.51640 * 140.90178 * 22 4 3 39 39 H 1.09001 * 113.51323 * 271.48117 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0186 0.0000 4 7 3.2761 0.0002 -0.6395 5 6 4.3521 0.0004 -1.4510 6 8 4.8377 1.0535 -1.8165 7 7 4.8899 -1.1666 -1.8575 8 6 6.0592 -1.1664 -2.7400 9 6 6.0986 -2.4738 -3.5345 10 6 7.3030 -2.4553 -4.4811 11 7 8.5166 -2.1888 -3.6971 12 6 9.5957 -3.0284 -3.7747 13 1 9.4530 -4.0697 -4.0230 14 6 10.8730 -2.5409 -3.5341 15 7 11.1011 -1.2453 -3.5728 16 14 12.2697 -3.7244 -3.1629 17 1 12.4497 -4.6525 -4.3082 18 1 13.5232 -2.9583 -2.9456 19 1 11.9470 -4.5034 -1.9405 20 6 8.5483 -1.0078 -2.8235 21 6 7.3321 -1.0395 -1.8998 22 6 2.4245 -1.0186 -0.0059 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.7626 1.2974 0.9994 26 1 2.2317 1.8821 -0.6354 27 1 4.5023 -2.0068 -1.5662 28 1 5.9937 -0.3245 -3.4292 29 1 5.1814 -2.5748 -4.1147 30 1 6.1892 -3.3148 -2.8469 31 1 7.1700 -1.6711 -5.2264 32 1 7.3941 -3.4207 -4.9788 33 1 11.9937 -0.9047 -3.4051 34 1 9.4598 -1.0196 -2.2260 35 1 8.5189 -0.1032 -3.4310 36 1 7.2927 -0.1196 -1.3164 37 1 7.4107 -1.8936 -1.2272 38 1 2.2234 -1.8771 -0.6466 39 1 2.7575 -1.3045 0.9918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311897607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:40 Heat of formation + Delta-G solvation = 60.105685 kcal Electronic energy + Delta-G solvation = -20158.136859 eV Core-core repulsion = 17103.643787 eV Total energy + Delta-G solvation = -3054.493072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50606 -38.62364 -37.04820 -34.31985 -32.39674 -31.68487 -30.03758 -29.46185 -26.97903 -26.42211 -24.68408 -22.19924 -21.86498 -20.10454 -19.30701 -18.54375 -17.82992 -16.73983 -16.27949 -15.98949 -15.02367 -14.77241 -14.47857 -14.18849 -13.69877 -13.50905 -13.48473 -13.28669 -12.95401 -12.52945 -12.44871 -12.23223 -11.46073 -11.09652 -10.91356 -10.70264 -10.69629 -10.36639 -10.24103 -10.17178 -10.00411 -9.72463 -9.68146 -9.51345 -8.93659 -8.55533 -8.34852 -6.66604 -5.75808 -3.18328 1.69043 2.57031 3.40078 3.40779 3.46036 3.46981 3.80451 4.02253 4.45484 4.51681 5.06222 5.08992 5.25907 5.33815 5.34996 5.42244 5.46065 5.49170 5.55902 5.67868 5.87052 5.93682 6.11858 6.26748 6.31063 6.41066 6.49872 6.64495 6.68409 6.82174 6.95546 7.01325 7.29335 7.43537 7.71647 7.81684 8.14259 8.47427 8.77434 9.23445 9.87072 10.43766 11.32799 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.044649 B = 0.003769 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.959108 B = 7427.782182 C = 7549.197661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.173 4.173 3 C 0.157 3.843 4 N -0.669 5.669 5 C 0.737 3.263 6 O -0.583 6.583 7 N -0.735 5.735 8 C 0.168 3.832 9 C -0.138 4.138 10 C 0.149 3.851 11 N -0.593 5.593 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.174 3.826 21 C -0.147 4.147 22 C 0.132 3.868 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.390 0.610 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 -0.480 8.094 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.174 4.174 3 C 0.034 3.966 4 N -0.409 5.409 5 C 0.440 3.560 6 O -0.460 6.460 7 N -0.388 5.388 8 C 0.065 3.935 9 C -0.178 4.178 10 C 0.022 3.978 11 N -0.316 5.316 12 C -0.385 4.385 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.545 5.545 16 Si 0.732 3.268 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.047 3.953 21 C -0.187 4.187 22 C 0.009 3.991 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.222 0.778 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.338 0.397 7.632 20.793 hybrid contribution 0.562 -0.998 0.478 1.242 sum -18.776 -0.602 8.110 20.461 Atomic orbital electron populations 1.22851 0.92678 1.02774 0.99821 1.22884 0.93963 0.98582 1.01980 1.21902 0.84311 0.92678 0.97713 1.48463 1.30968 1.10869 1.50646 1.15214 0.77638 0.84848 0.78332 1.90944 1.62903 1.30786 1.61392 1.45463 1.33531 1.06149 1.53652 1.20945 0.82964 0.98911 0.90691 1.22346 0.99793 0.96285 0.99394 1.20833 0.86120 0.98961 0.91887 1.44094 1.12133 1.28562 1.46762 1.19134 0.84777 0.90362 1.44232 0.91679 1.25045 0.97282 0.95718 1.01580 1.70034 1.20976 1.11384 1.52085 0.86371 0.81613 0.80283 0.78486 1.20896 1.21636 1.21072 1.20674 0.94915 0.88425 0.91258 1.22512 0.96352 1.00479 0.99358 1.22036 0.85976 0.92862 0.98216 0.86958 0.86982 0.89102 0.89998 0.77779 0.90046 0.92663 0.91912 0.96139 0.92306 0.93526 0.89268 0.96132 0.92806 0.92819 0.90278 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 14.71 29.02 0.43 -0.42 16 2 C -0.17 -1.37 7.52 -100.67 -0.76 -2.12 16 3 C 0.16 1.58 8.59 -10.21 -0.09 1.49 16 4 N -0.67 -8.62 3.71 -197.44 -0.73 -9.35 16 5 C 0.74 12.61 8.76 -86.93 -0.76 11.85 16 6 O -0.58 -12.61 16.79 5.29 0.09 -12.52 16 7 N -0.74 -11.49 5.08 -58.64 -0.30 -11.79 16 8 C 0.17 3.12 2.42 -67.89 -0.16 2.95 16 9 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 10 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 11 N -0.59 -15.10 3.00 -172.58 -0.52 -15.61 16 12 C -0.26 -7.07 9.59 -15.06 -0.14 -7.21 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 15 N -0.90 -26.68 11.20 55.49 0.62 -26.05 16 16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.17 4.35 5.28 -3.93 -0.02 4.33 16 21 C -0.15 -3.07 5.64 -26.83 -0.15 -3.22 16 22 C 0.13 1.12 8.24 -10.36 -0.09 1.03 16 23 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 24 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.39 4.93 8.33 -40.82 -0.34 4.59 16 28 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -33.63 322.00 -9.10 -42.73 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.08 Total: 1.67 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.00 Total: 9.26 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.93 Total: -62.81 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.63 -9.10 -42.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311897607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.837 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds