Wall clock time and date at job start Mon Mar 30 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47713 * 2 1 4 4 C 1.50698 * 109.47430 * 179.97438 * 3 2 1 5 5 N 1.34259 * 126.28989 * 265.02585 * 4 3 2 6 6 H 0.96992 * 125.75668 * 359.94163 * 5 4 3 7 7 N 1.39938 * 108.48889 * 179.97438 * 5 4 3 8 8 C 1.30448 * 108.89629 * 0.02562 * 7 5 4 9 9 C 1.38038 * 126.29028 * 84.71290 * 4 3 2 10 10 C 1.47431 * 126.41633 * 359.97438 * 9 4 3 11 11 O 1.21603 * 120.00324 * 314.98355 * 10 9 4 12 12 N 1.34779 * 120.00140 * 134.97855 * 10 9 4 13 13 C 1.46501 * 120.00200 * 184.00403 * 12 10 9 14 14 C 1.52999 * 109.47296 * 85.07808 * 13 12 10 15 15 C 1.46501 * 119.99886 * 3.99611 * 12 10 9 16 16 C 1.50703 * 109.46805 * 93.88582 * 15 12 10 17 17 H 1.08001 * 119.99873 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99905 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47153 * 59.99921 * 20 18 16 22 22 H 1.48494 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46839 * 300.00069 * 20 18 16 24 24 H 1.09005 * 109.47367 * 300.00022 * 1 2 3 25 25 H 1.09001 * 109.47329 * 59.99832 * 1 2 3 26 26 H 1.09001 * 109.47850 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47367 * 239.99977 * 2 1 3 28 28 H 1.09001 * 109.47329 * 120.00168 * 2 1 3 29 29 H 1.09005 * 109.46723 * 59.99583 * 3 2 1 30 30 H 1.09001 * 109.46860 * 300.00455 * 3 2 1 31 31 H 1.08003 * 125.98577 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47092 * 205.08020 * 13 12 10 33 33 H 1.09000 * 109.46605 * 325.07551 * 13 12 10 34 34 H 1.08993 * 109.46880 * 60.00082 * 14 13 12 35 35 H 1.08998 * 109.46857 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47223 * 300.00131 * 14 13 12 37 37 H 1.08995 * 109.47047 * 213.88819 * 15 12 10 38 38 H 1.09004 * 109.46903 * 333.88749 * 15 12 10 39 39 H 0.96997 * 119.99822 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3412 1.5363 1.0791 6 1 4.0419 1.6173 1.9981 7 7 5.6738 1.4985 0.6535 8 6 5.6993 1.3854 -0.6458 9 6 4.3645 1.3396 -1.1069 10 6 3.9269 1.2092 -2.5087 11 8 3.0357 0.4340 -2.7978 12 7 4.5144 1.9492 -3.4698 13 6 4.0215 1.8850 -4.8479 14 6 2.8545 2.8597 -5.0181 15 6 5.6459 2.8180 -3.1363 16 6 6.9361 2.0800 -3.3849 17 1 6.9153 1.0655 -3.7547 18 6 8.1431 2.7004 -3.1412 19 7 8.1684 3.9360 -2.6914 20 14 9.7424 1.7859 -3.4500 21 1 9.8216 1.3965 -4.8809 22 1 10.8893 2.6665 -3.1119 23 1 9.7875 0.5676 -2.6022 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5854 1.3318 -1.2609 32 1 4.8241 2.1558 -5.5338 33 1 3.6836 0.8719 -5.0659 34 1 3.1925 3.8727 -4.8000 35 1 2.4875 2.8115 -6.0433 36 1 2.0519 2.5889 -4.3321 37 1 5.6131 3.7123 -3.7586 38 1 5.5873 3.1038 -2.0860 39 1 9.0175 4.3722 -2.5196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132769708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:02 Heat of formation + Delta-G solvation = 16.264847 kcal Electronic energy + Delta-G solvation = -20871.613046 eV Core-core repulsion = 17815.218893 eV Total energy + Delta-G solvation = -3056.394153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89437 -38.46620 -35.33713 -34.70967 -32.82723 -31.42545 -30.61954 -29.51370 -27.06769 -26.36253 -23.31962 -22.96605 -21.70054 -21.12569 -20.50517 -17.94068 -17.12778 -16.43212 -15.61345 -15.42473 -14.83235 -14.52148 -14.34195 -13.97894 -13.77686 -13.26649 -13.17051 -12.84168 -12.57600 -12.22925 -12.07957 -11.83269 -11.56707 -11.38309 -11.16975 -11.12341 -10.94814 -10.73114 -10.56759 -10.41831 -10.33079 -10.05463 -9.73448 -9.02929 -8.98038 -8.54299 -8.04398 -7.60267 -6.16736 -4.25245 2.11892 3.03306 3.21607 3.27015 3.32298 3.34996 3.87878 4.16666 4.38569 4.81019 5.02608 5.13448 5.14326 5.39914 5.42125 5.57431 5.67159 5.79474 5.85150 5.88085 5.94030 5.96897 6.07510 6.12387 6.31999 6.32596 6.40972 6.52850 6.58444 6.70183 6.88308 7.23753 7.30322 7.61728 7.66292 7.78584 8.09641 8.17086 8.45386 8.83635 9.15789 9.42388 10.88653 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.006966 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.004624 B = 4018.641068 C = 4974.604540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.051 4.051 4 C 0.128 3.872 5 N -0.477 5.477 6 H 0.432 0.568 7 N -0.312 5.312 8 C 0.110 3.890 9 C -0.269 4.269 10 C 0.593 3.407 11 O -0.574 6.574 12 N -0.590 5.590 13 C 0.118 3.882 14 C -0.163 4.163 15 C 0.234 3.766 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.214 0.786 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -2.743 4.058 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.005 4.005 5 N -0.182 5.182 6 H 0.275 0.725 7 N -0.132 5.132 8 C -0.077 4.077 9 C -0.284 4.284 10 C 0.382 3.618 11 O -0.456 6.456 12 N -0.320 5.320 13 C -0.005 4.005 14 C -0.221 4.221 15 C 0.114 3.886 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.531 -2.859 4.982 11.996 hybrid contribution 0.578 -0.191 -0.397 0.727 sum -9.952 -3.050 4.586 11.375 Atomic orbital electron populations 1.21730 0.95670 1.01565 1.01508 1.21521 0.95552 0.95298 1.03433 1.20268 0.86674 0.98831 1.03293 1.21264 0.93777 0.98164 0.87267 1.46107 1.04854 1.59136 1.08073 0.72481 1.77194 0.94882 1.26741 1.14403 1.25059 0.98752 0.92873 0.90993 1.20033 0.93248 1.21367 0.93741 1.17267 0.80955 0.79571 0.84055 1.90627 1.33019 1.38660 1.83289 1.48079 1.33263 1.43507 1.07141 1.21195 0.96117 0.99474 0.83761 1.22111 0.98981 1.00086 1.00934 1.19528 0.82060 0.89270 0.97733 1.21491 0.90514 1.00545 1.45563 0.91892 1.24957 0.99151 0.94828 0.94676 1.69920 1.26862 1.11710 1.43611 0.86626 0.82579 0.79798 0.78977 1.20095 1.21144 1.19853 0.93263 0.92441 0.92732 0.89313 0.92688 0.91219 0.89212 0.77002 0.90364 0.91292 0.92743 0.92521 0.92856 0.95042 0.93698 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.15 0.37 -1.17 16 2 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 3 C -0.05 -0.69 5.31 -27.88 -0.15 -0.84 16 4 C 0.13 2.16 6.55 -81.60 -0.53 1.62 16 5 N -0.48 -7.62 7.29 33.86 0.25 -7.37 16 6 H 0.43 5.10 8.96 -182.73 -1.64 3.46 16 7 N -0.31 -6.24 12.63 30.86 0.39 -5.85 16 8 C 0.11 2.38 9.71 -16.98 -0.16 2.21 16 9 C -0.27 -5.51 5.11 -105.07 -0.54 -6.04 16 10 C 0.59 12.75 7.29 -12.52 -0.09 12.66 16 11 O -0.57 -12.69 15.21 5.28 0.08 -12.61 16 12 N -0.59 -12.62 2.47 -176.32 -0.43 -13.06 16 13 C 0.12 2.19 6.13 -4.04 -0.02 2.16 16 14 C -0.16 -2.58 10.20 37.16 0.38 -2.20 16 15 C 0.23 5.58 4.68 -5.19 -0.02 5.55 16 16 C -0.54 -13.73 7.10 -34.44 -0.24 -13.97 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -24.02 13.29 55.43 0.74 -23.28 16 20 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.42 6.85 -51.93 -0.36 1.06 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 31 H 0.21 5.00 5.48 -52.48 -0.29 4.71 16 32 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 33 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.05 1.14 5.53 -51.93 -0.29 0.85 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -29.08 324.94 -7.53 -36.61 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.14 Total: 5.48 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.28 Total: -0.05 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.94 Total: -49.55 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.08 -7.53 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132769708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.874 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds