Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47713 * 2 1 4 4 C 1.50698 * 109.47430 * 179.97438 * 3 2 1 5 5 N 1.34259 * 126.28989 * 265.02585 * 4 3 2 6 6 H 0.96992 * 125.75668 * 359.94163 * 5 4 3 7 7 N 1.39938 * 108.48889 * 179.97438 * 5 4 3 8 8 C 1.30448 * 108.89629 * 0.02562 * 7 5 4 9 9 C 1.38038 * 126.29028 * 84.71290 * 4 3 2 10 10 C 1.47431 * 126.41633 * 359.97438 * 9 4 3 11 11 O 1.21603 * 120.00324 * 314.98355 * 10 9 4 12 12 N 1.34779 * 120.00140 * 134.97855 * 10 9 4 13 13 C 1.46501 * 120.00200 * 184.00403 * 12 10 9 14 14 C 1.52999 * 109.47296 * 85.07808 * 13 12 10 15 15 C 1.46501 * 119.99886 * 3.99611 * 12 10 9 16 16 C 1.50703 * 109.46805 * 93.88582 * 15 12 10 17 17 H 1.08001 * 119.99873 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99905 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47153 * 59.99921 * 20 18 16 22 22 H 1.48494 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46839 * 300.00069 * 20 18 16 24 24 H 1.09005 * 109.47367 * 300.00022 * 1 2 3 25 25 H 1.09001 * 109.47329 * 59.99832 * 1 2 3 26 26 H 1.09001 * 109.47850 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47367 * 239.99977 * 2 1 3 28 28 H 1.09001 * 109.47329 * 120.00168 * 2 1 3 29 29 H 1.09005 * 109.46723 * 59.99583 * 3 2 1 30 30 H 1.09001 * 109.46860 * 300.00455 * 3 2 1 31 31 H 1.08003 * 125.98577 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47092 * 205.08020 * 13 12 10 33 33 H 1.09000 * 109.46605 * 325.07551 * 13 12 10 34 34 H 1.08993 * 109.46880 * 60.00082 * 14 13 12 35 35 H 1.08998 * 109.46857 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47223 * 300.00131 * 14 13 12 37 37 H 1.08995 * 109.47047 * 213.88819 * 15 12 10 38 38 H 1.09004 * 109.46903 * 333.88749 * 15 12 10 39 39 H 0.96997 * 119.99822 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3412 1.5363 1.0791 6 1 4.0419 1.6173 1.9981 7 7 5.6738 1.4985 0.6535 8 6 5.6993 1.3854 -0.6458 9 6 4.3645 1.3396 -1.1069 10 6 3.9269 1.2092 -2.5087 11 8 3.0357 0.4340 -2.7978 12 7 4.5144 1.9492 -3.4698 13 6 4.0215 1.8850 -4.8479 14 6 2.8545 2.8597 -5.0181 15 6 5.6459 2.8180 -3.1363 16 6 6.9361 2.0800 -3.3849 17 1 6.9153 1.0655 -3.7547 18 6 8.1431 2.7004 -3.1412 19 7 8.1684 3.9360 -2.6914 20 14 9.7424 1.7859 -3.4500 21 1 9.8216 1.3965 -4.8809 22 1 10.8893 2.6665 -3.1119 23 1 9.7875 0.5676 -2.6022 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5854 1.3318 -1.2609 32 1 4.8241 2.1558 -5.5338 33 1 3.6836 0.8719 -5.0659 34 1 3.1925 3.8727 -4.8000 35 1 2.4875 2.8115 -6.0433 36 1 2.0519 2.5889 -4.3321 37 1 5.6131 3.7123 -3.7586 38 1 5.5873 3.1038 -2.0860 39 1 9.0175 4.3722 -2.5196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132769708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = -1.286452 kcal Electronic energy + Delta-G solvation = -20872.374128 eV Core-core repulsion = 17815.218893 eV Total energy + Delta-G solvation = -3057.155235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.39377 -40.12590 -36.91756 -35.95456 -34.72120 -32.96132 -32.02889 -30.95363 -28.92263 -27.57678 -24.90183 -24.76291 -22.84273 -22.65959 -21.91515 -19.53593 -18.71094 -18.34166 -17.15277 -17.09229 -16.31417 -15.97008 -15.81384 -15.40086 -15.32273 -14.74787 -14.49363 -14.33757 -14.11579 -13.74680 -13.40285 -13.11381 -13.08697 -13.06434 -12.66264 -12.56360 -12.36916 -12.11882 -12.11585 -11.86295 -11.72289 -11.66814 -11.53759 -10.71390 -10.58478 -10.41187 -9.59248 -9.32588 -8.16606 -6.31197 0.68766 1.36700 1.44868 1.46629 1.53513 1.89295 2.25090 2.38263 2.62285 3.12584 3.61136 3.80515 3.98039 4.14765 4.20973 4.38349 4.44638 4.46712 4.59358 4.61297 4.77412 4.80080 4.89292 4.94246 4.96912 5.04837 5.12897 5.23699 5.25754 5.37581 5.39550 5.50583 5.56865 5.72386 5.96161 6.11177 6.36801 6.63673 6.66015 6.88365 7.36129 7.50712 8.87819 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.006966 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.004624 B = 4018.641068 C = 4974.604540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.049 4.049 4 C 0.152 3.848 5 N -0.452 5.452 6 H 0.454 0.546 7 N -0.328 5.328 8 C 0.094 3.906 9 C -0.307 4.307 10 C 0.591 3.409 11 O -0.584 6.584 12 N -0.596 5.596 13 C 0.111 3.889 14 C -0.151 4.151 15 C 0.253 3.747 16 C -0.543 4.543 17 H 0.054 0.946 18 C 0.029 3.971 19 N -0.914 5.914 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.188 0.812 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.029 0.971 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 -3.024 4.984 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.089 4.089 4 C 0.018 3.982 5 N -0.160 5.160 6 H 0.301 0.699 7 N -0.150 5.150 8 C -0.092 4.092 9 C -0.321 4.321 10 C 0.380 3.620 11 O -0.467 6.467 12 N -0.325 5.325 13 C -0.011 4.011 14 C -0.209 4.209 15 C 0.132 3.868 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.172 4.172 19 N -0.552 5.552 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.204 0.796 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.936 -3.147 5.917 13.689 hybrid contribution 0.939 -0.129 -0.630 1.138 sum -10.997 -3.276 5.288 12.634 Atomic orbital electron populations 1.21693 0.93529 1.02362 1.02370 1.21454 0.97347 0.94345 1.02236 1.20452 0.83795 0.99728 1.04879 1.21721 0.95284 0.95071 0.86162 1.46045 1.03474 1.57334 1.09136 0.69854 1.77088 0.97044 1.27207 1.13613 1.24645 0.98577 0.94423 0.91588 1.20124 0.93507 1.24218 0.94288 1.17440 0.80736 0.79228 0.84560 1.90609 1.33527 1.38950 1.83603 1.48105 1.32807 1.43213 1.08391 1.21387 0.97098 1.00296 0.82338 1.22003 0.97431 0.98750 1.02712 1.19119 0.82523 0.88845 0.96315 1.21586 0.91388 1.00108 1.45043 0.92741 1.25579 1.01841 0.95389 0.94420 1.70013 1.27497 1.12964 1.44744 0.85740 0.79203 0.78668 0.78940 1.19531 1.20842 1.19700 0.90881 0.93072 0.92055 0.92953 0.91482 0.87013 0.90175 0.79567 0.90472 0.91374 0.93204 0.89405 0.93490 0.96695 0.95270 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.12 -2.71 5.92 30.59 0.18 -2.53 16 3 C -0.05 -1.20 5.31 29.85 0.16 -1.04 16 4 C 0.15 4.92 6.55 42.14 0.28 5.20 16 5 N -0.45 -13.61 7.29 -46.80 -0.34 -13.95 16 6 H 0.45 9.30 8.96 -213.43 -1.91 7.39 16 7 N -0.33 -13.06 12.63 -56.27 -0.71 -13.77 16 8 C 0.09 4.16 9.71 85.65 0.83 5.00 16 9 C -0.31 -12.66 5.11 -20.15 -0.10 -12.76 16 10 C 0.59 25.80 7.29 86.66 0.63 26.44 16 11 O -0.58 -26.03 15.21 -4.04 -0.06 -26.09 16 12 N -0.60 -26.00 2.47 -830.02 -2.05 -28.05 16 13 C 0.11 4.14 6.13 86.38 0.53 4.67 16 14 C -0.15 -4.64 10.20 71.98 0.73 -3.91 16 15 C 0.25 12.44 4.68 85.63 0.40 12.84 16 16 C -0.54 -28.16 7.10 25.60 0.18 -27.97 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.03 1.52 5.46 84.65 0.46 1.98 16 19 N -0.91 -50.55 13.29 21.45 0.28 -50.26 16 20 Si 0.95 41.94 29.54 68.60 2.03 43.96 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.63 6.85 -2.38 -0.02 1.62 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 31 H 0.19 9.20 5.48 -2.91 -0.02 9.18 16 32 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 33 H 0.07 2.53 7.52 -2.39 -0.02 2.51 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.01 0.78 8.10 -2.39 -0.02 0.76 16 38 H 0.03 1.54 5.53 -2.38 -0.01 1.53 16 39 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.66 324.94 3.29 -60.38 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.86 Total: 21.71 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.00 Total: 6.07 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -2.81 Total: -106.02 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -63.66 3.29 -60.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132769708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.089 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds