Wall clock time and date at job start Mon Mar 30 2020 00:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 110.86060 * 2 1 4 4 C 1.54484 * 110.96743 * 236.17170 * 2 1 3 5 5 N 1.46765 * 105.47238 * 267.29935 * 4 2 1 6 6 C 1.34414 * 111.30255 * 342.98290 * 5 4 2 7 7 O 1.21280 * 124.94369 * 180.45352 * 6 5 4 8 8 C 1.51288 * 110.11476 * 0.40916 * 6 5 4 9 9 H 1.09003 * 110.59944 * 134.98596 * 8 6 5 10 10 N 1.46901 * 110.48457 * 257.57313 * 8 6 5 11 11 C 1.46898 * 111.00283 * 269.77615 * 10 8 6 12 12 C 1.52997 * 109.47386 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46832 * 304.99869 * 12 11 10 14 14 C 1.47206 * 109.47168 * 64.99626 * 12 11 10 15 15 N 5.40321 * 126.88767 * 51.98145 * 2 1 3 16 16 C 1.52997 * 109.47232 * 184.99670 * 12 11 10 17 17 C 1.50697 * 109.47050 * 174.99758 * 16 12 11 18 18 H 1.08007 * 120.00134 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99937 * 179.97438 * 17 16 12 20 20 N 1.31509 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99815 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47482 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47138 * 120.00085 * 21 19 17 24 24 H 1.48503 * 109.46778 * 239.99901 * 21 19 17 25 25 H 1.08998 * 109.46548 * 296.21073 * 1 2 3 26 26 H 1.09001 * 109.46984 * 56.20494 * 1 2 3 27 27 H 1.08992 * 109.47074 * 176.20988 * 1 2 3 28 28 H 1.08998 * 109.47598 * 183.79236 * 3 2 1 29 29 H 1.09002 * 109.47516 * 303.79546 * 3 2 1 30 30 H 1.09004 * 109.47274 * 63.79332 * 3 2 1 31 31 H 1.09001 * 110.24369 * 26.29433 * 4 2 1 32 32 H 1.08991 * 110.24830 * 148.30261 * 4 2 1 33 33 H 0.97002 * 124.35163 * 162.97921 * 5 4 2 34 34 H 1.00898 * 110.99971 * 33.73046 * 10 8 6 35 35 H 1.09004 * 109.47163 * 59.99599 * 11 10 8 36 36 H 1.09002 * 109.46852 * 300.00147 * 11 10 8 37 37 H 1.08994 * 109.47510 * 294.99830 * 16 12 11 38 38 H 1.09000 * 109.46818 * 55.00071 * 16 12 11 39 39 H 0.97005 * 119.99650 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4296 0.0000 4 6 2.0829 -0.8031 -1.1983 5 7 2.2852 -2.1670 -0.6957 6 6 2.2954 -2.1957 0.6481 7 8 2.4527 -3.1928 1.3205 8 6 2.0834 -0.8031 1.1999 9 1 1.3593 -0.8195 2.0145 10 7 3.3571 -0.2319 1.6573 11 6 3.5991 -0.5496 3.0710 12 6 4.9313 0.0612 3.5102 13 1 5.7246 -0.2814 2.8459 14 6 4.8414 1.5293 3.4508 15 7 4.7733 2.6617 3.4046 16 6 5.2435 -0.3730 4.9437 17 6 6.6109 0.1263 5.3333 18 1 7.1985 0.6967 4.6290 19 6 7.1116 -0.1441 6.5892 20 7 6.3960 -0.8382 7.4469 21 14 8.8064 0.4754 7.0723 22 1 9.4021 1.2241 5.9367 23 1 8.6884 1.3724 8.2498 24 1 9.6762 -0.6786 7.4144 25 1 -0.3632 0.4539 0.9220 26 1 -0.3633 0.5716 -0.8540 27 1 -0.3633 -1.0253 -0.0679 28 1 3.1624 1.4041 -0.0680 29 1 1.6701 1.9728 -0.8540 30 1 1.7802 1.9308 0.9220 31 1 1.3617 -0.8055 -2.0157 32 1 3.0302 -0.3795 -1.5314 33 1 2.3971 -2.9476 -1.2606 34 1 4.1225 -0.5464 1.0800 35 1 3.6350 -1.6314 3.1993 36 1 2.7932 -0.1382 3.6789 37 1 4.4979 0.0445 5.6204 38 1 5.2224 -1.4610 5.0065 39 1 6.7485 -1.0288 8.3304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:36 Heat of formation + Delta-G solvation = -22.772509 kcal Electronic energy + Delta-G solvation = -20187.874495 eV Core-core repulsion = 17129.787555 eV Total energy + Delta-G solvation = -3058.086940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98295 -37.32019 -36.95685 -34.85348 -33.62577 -33.05476 -31.31043 -27.73735 -27.48233 -26.04560 -25.44274 -22.69772 -21.77103 -20.71837 -19.61242 -17.45612 -17.04505 -16.47088 -16.04194 -15.52208 -14.91077 -14.66938 -14.53003 -14.09250 -13.79153 -13.62792 -13.56480 -12.94657 -12.60996 -12.27593 -12.17233 -12.09599 -12.00522 -11.78085 -11.52019 -11.28135 -11.10788 -11.06480 -10.89441 -10.67560 -10.48027 -10.26042 -10.22012 -9.53789 -9.31305 -9.19318 -8.44661 -8.36104 -6.07280 -4.10548 2.40406 3.15867 3.30057 3.38108 3.42481 3.72863 3.82364 3.98186 4.08633 4.31192 4.43594 4.57487 4.75022 4.92296 5.10546 5.17374 5.28679 5.30834 5.38210 5.50857 5.55434 5.69908 5.74838 5.81399 5.89491 6.04435 6.11266 6.33549 6.40328 6.48868 6.58039 6.79058 6.89946 7.24110 7.47222 7.55161 7.87747 8.08332 8.24919 8.57321 8.94330 9.54839 11.03667 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004366 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.062941 B = 6411.419702 C = 6924.508043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.115 4.115 4 C 0.106 3.894 5 N -0.731 5.731 6 C 0.489 3.511 7 O -0.525 6.525 8 C 0.064 3.936 9 H 0.113 0.887 10 N -0.658 5.658 11 C 0.060 3.940 12 C 0.011 3.989 13 H 0.098 0.902 14 C 0.255 3.745 15 N -0.478 5.478 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.343 0.657 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.039 0.961 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 -1.188 -18.566 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.173 4.173 4 C -0.018 4.018 5 N -0.388 5.388 6 C 0.272 3.728 7 O -0.400 6.400 8 C -0.050 4.050 9 H 0.131 0.869 10 N -0.289 5.289 11 C -0.070 4.070 12 C -0.011 4.011 13 H 0.116 0.884 14 C -0.062 4.062 15 N -0.155 5.155 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.671 0.643 -17.869 21.352 hybrid contribution 1.292 -1.488 0.022 1.971 sum -10.379 -0.846 -17.847 20.663 Atomic orbital electron populations 1.21813 0.93063 1.01903 1.02781 1.21580 0.95856 0.96776 0.92960 1.21490 1.01847 0.92379 1.01587 1.22306 1.01222 0.81361 0.96913 1.46260 1.74268 1.10469 1.07780 1.21992 0.75743 0.92114 0.82919 1.90788 1.48927 1.37501 1.62754 1.22473 0.95160 0.88951 0.98395 0.86948 1.60820 1.02932 1.60466 1.04657 1.22256 0.97791 0.99804 0.87110 1.19195 0.96570 0.81925 1.03449 0.88378 1.28834 0.91555 0.94868 0.90916 1.80956 1.10163 1.13240 1.11100 1.19174 0.97492 0.97806 0.86287 1.21172 1.01314 1.34768 0.99146 0.92457 1.24956 0.97607 0.94951 0.96465 1.69953 1.37301 1.39069 1.06600 0.86539 0.84287 0.78644 0.78624 1.19687 1.20969 1.20878 0.91636 0.91789 0.92701 0.91219 0.93376 0.91636 0.90371 0.90686 0.75502 0.83889 0.92094 0.90042 0.95477 0.94324 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.49 37.16 0.32 -0.66 16 2 C -0.07 -0.57 0.98 -152.88 -0.15 -0.72 16 3 C -0.12 -1.02 7.91 37.15 0.29 -0.73 16 4 C 0.11 0.72 6.90 -3.12 -0.02 0.69 16 5 N -0.73 -6.35 6.24 -59.20 -0.37 -6.72 16 6 C 0.49 6.04 7.76 -10.86 -0.08 5.96 16 7 O -0.53 -8.88 18.00 5.56 0.10 -8.78 16 8 C 0.06 0.70 2.67 -67.72 -0.18 0.52 16 9 H 0.11 1.29 7.59 -51.93 -0.39 0.89 16 10 N -0.66 -8.12 4.40 -106.73 -0.47 -8.59 16 11 C 0.06 0.90 4.90 -3.83 -0.02 0.89 16 12 C 0.01 0.20 2.35 -93.41 -0.22 -0.02 16 13 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 14 C 0.26 5.18 13.67 -20.78 -0.28 4.89 16 15 N -0.48 -10.47 18.53 42.13 0.78 -9.68 16 16 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 17 C -0.53 -14.13 8.60 -34.44 -0.30 -14.42 16 18 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.69 7.35 -51.93 -0.38 0.31 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 32 H 0.07 0.47 7.82 -51.93 -0.41 0.06 16 33 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 34 H 0.34 4.03 8.44 -39.29 -0.33 3.70 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -32.37 330.72 -6.17 -38.55 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.05 Total: 0.26 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.87 Total: -1.36 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.68 Total: -50.13 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.10 Total: -8.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.37 -6.17 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.773 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds