Wall clock time and date at job start Mon Mar 30 2020 00:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.88533 * 2 1 4 4 C 1.54837 * 111.07909 * 236.06188 * 2 1 3 5 5 N 1.46757 * 105.49171 * 216.48668 * 4 2 1 6 6 C 1.34421 * 111.30490 * 17.03880 * 5 4 2 7 7 O 1.21278 * 124.94722 * 179.63060 * 6 5 4 8 8 C 1.51280 * 110.11303 * 359.58688 * 6 5 4 9 9 H 1.09003 * 110.48871 * 224.94256 * 8 6 5 10 10 N 1.46906 * 110.48324 * 102.43005 * 8 6 5 11 11 C 1.46901 * 110.99793 * 88.24438 * 10 8 6 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 8 13 13 H 1.08990 * 109.47170 * 54.99770 * 12 11 10 14 14 C 1.47196 * 109.47160 * 294.99517 * 12 11 10 15 15 N 5.42166 * 48.29995 * 121.05087 * 2 1 3 16 16 C 1.53002 * 109.46776 * 174.99873 * 12 11 10 17 17 C 1.50701 * 109.46807 * 184.99822 * 16 12 11 18 18 H 1.07998 * 120.00496 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99849 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46944 * 59.99994 * 21 19 17 23 23 H 1.48494 * 109.47003 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47091 * 300.00102 * 21 19 17 25 25 H 1.09002 * 109.46841 * 296.18384 * 1 2 3 26 26 H 1.08994 * 109.47093 * 56.19029 * 1 2 3 27 27 H 1.09003 * 109.46829 * 176.18715 * 1 2 3 28 28 H 1.09000 * 109.47318 * 183.81188 * 3 2 1 29 29 H 1.09001 * 109.47085 * 303.81405 * 3 2 1 30 30 H 1.09004 * 109.46947 * 63.81332 * 3 2 1 31 31 H 1.08997 * 110.21920 * 97.48689 * 4 2 1 32 32 H 1.09003 * 110.32411 * 335.54072 * 4 2 1 33 33 H 0.97001 * 124.34977 * 197.04987 * 5 4 2 34 34 H 1.00899 * 110.99995 * 324.28836 * 10 8 6 35 35 H 1.09002 * 109.47401 * 59.99808 * 11 10 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 11 10 8 37 37 H 1.08993 * 109.47416 * 304.99509 * 16 12 11 38 38 H 1.09001 * 109.46966 * 65.00241 * 16 12 11 39 39 H 0.97010 * 119.99808 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0869 -0.8066 -1.1986 5 7 3.2889 -1.4802 -0.6933 6 6 3.3102 -1.4980 0.6506 7 8 4.1858 -1.9974 1.3250 8 6 2.0835 -0.8035 1.1996 9 1 2.3572 -0.1328 2.0142 10 7 1.0958 -1.7900 1.6572 11 6 1.3335 -2.1620 3.0583 12 6 0.2880 -3.1889 3.4977 13 1 0.3028 -4.0377 2.8141 14 6 -1.0467 -2.5684 3.4808 15 7 -2.0766 -2.0880 3.4680 16 6 0.6091 -3.6694 4.9144 17 6 -0.3467 -4.7687 5.3007 18 1 -1.1073 -5.0920 4.6055 19 6 -0.2507 -5.3609 6.5421 20 7 0.6745 -4.9661 7.3892 21 14 -1.4359 -6.7231 7.0212 22 1 -1.2976 -7.8563 6.0714 23 1 -1.1242 -7.1894 8.3961 24 1 -2.8275 -6.2068 6.9766 25 1 -0.3633 0.4535 0.9222 26 1 -0.3633 0.5718 -0.8538 27 1 -0.3633 -1.0254 -0.0683 28 1 3.1630 1.4034 -0.0683 29 1 1.6707 1.9728 -0.8538 30 1 1.7813 1.9306 0.9222 31 1 2.3468 -0.1348 -2.0166 32 1 1.3549 -1.5418 -1.5331 33 1 3.9793 -1.8632 -1.2567 34 1 1.0957 -2.6045 1.0618 35 1 1.2590 -1.2750 3.6875 36 1 2.3297 -2.5937 3.1555 37 1 1.6306 -4.0481 4.9469 38 1 0.5074 -2.8378 5.6118 39 1 0.7423 -5.3831 8.2625 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:39 Heat of formation + Delta-G solvation = -22.853273 kcal Electronic energy + Delta-G solvation = -20188.286535 eV Core-core repulsion = 17130.196092 eV Total energy + Delta-G solvation = -3058.090442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97313 -37.30985 -36.94589 -34.83644 -33.62132 -33.05205 -31.30402 -27.73404 -27.48312 -26.04487 -25.43912 -22.69632 -21.76646 -20.71261 -19.61770 -17.45648 -17.03834 -16.46398 -16.03712 -15.52435 -14.91736 -14.67265 -14.53361 -14.09176 -13.78400 -13.62777 -13.55728 -12.94166 -12.60577 -12.26724 -12.17284 -12.10083 -11.99615 -11.77526 -11.52221 -11.28060 -11.11506 -11.04567 -10.89166 -10.65560 -10.51150 -10.26318 -10.21678 -9.52954 -9.31241 -9.21643 -8.43596 -8.35781 -6.06571 -4.10088 2.40832 3.16048 3.32970 3.37272 3.40552 3.72303 3.81888 3.98024 4.07717 4.31343 4.43863 4.56976 4.74364 4.92401 5.09900 5.17226 5.28978 5.31270 5.37802 5.50645 5.55642 5.69569 5.74795 5.80906 5.89040 6.03898 6.11769 6.33560 6.39595 6.48984 6.58175 6.79251 6.90055 7.24219 7.47388 7.55501 7.87900 8.08615 8.25279 8.57483 8.94246 9.55124 11.04256 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.004372 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.596842 B = 6402.531385 C = 6920.827755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.138 4.138 4 C 0.106 3.894 5 N -0.732 5.732 6 C 0.488 3.512 7 O -0.525 6.525 8 C 0.064 3.936 9 H 0.113 0.887 10 N -0.658 5.658 11 C 0.060 3.940 12 C 0.011 3.989 13 H 0.098 0.902 14 C 0.255 3.745 15 N -0.478 5.478 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.343 0.657 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.027 0.973 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 10.408 -18.558 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.018 4.018 5 N -0.388 5.388 6 C 0.272 3.728 7 O -0.399 6.399 8 C -0.050 4.050 9 H 0.131 0.869 10 N -0.289 5.289 11 C -0.070 4.070 12 C -0.011 4.011 13 H 0.116 0.884 14 C -0.062 4.062 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.374 11.352 -17.780 21.363 hybrid contribution 0.910 -1.760 -0.047 1.982 sum 4.284 9.593 -17.827 20.692 Atomic orbital electron populations 1.21491 0.91259 1.02949 1.01623 1.21638 0.97910 0.94669 0.92909 1.21809 1.00670 0.94286 1.02785 1.22363 0.86667 0.95938 0.96878 1.46261 1.24876 1.59876 1.07791 1.22017 0.88055 0.79847 0.82904 1.90788 1.40002 1.46532 1.62602 1.22477 0.88514 0.95600 0.98403 0.86938 1.60830 1.46692 1.16859 1.04480 1.22256 0.98081 0.99227 0.87423 1.19195 0.83076 0.95341 1.03508 0.88383 1.28885 0.94354 0.92021 0.90934 1.81008 1.12396 1.11008 1.11067 1.19165 0.98198 0.96740 0.86580 1.21093 1.16018 1.19033 1.00403 0.92571 1.24952 0.95496 0.97068 0.96408 1.69936 1.33176 1.42153 1.07664 0.86653 0.81526 0.82271 0.77612 1.20091 1.21195 1.20223 0.91592 0.93347 0.91250 0.92693 0.91783 0.91622 0.90382 0.90696 0.75502 0.83900 0.90036 0.92065 0.94332 0.95488 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 7.92 37.16 0.29 -0.72 16 2 C -0.07 -0.57 0.99 -152.69 -0.15 -0.72 16 3 C -0.14 -0.97 8.50 37.16 0.32 -0.65 16 4 C 0.11 0.71 6.91 -2.93 -0.02 0.69 16 5 N -0.73 -6.36 6.24 -59.01 -0.37 -6.73 16 6 C 0.49 6.05 7.76 -10.86 -0.08 5.96 16 7 O -0.53 -8.89 17.83 5.56 0.10 -8.79 16 8 C 0.06 0.70 2.65 -67.72 -0.18 0.52 16 9 H 0.11 1.29 7.62 -51.93 -0.40 0.90 16 10 N -0.66 -8.13 4.39 -106.73 -0.47 -8.60 16 11 C 0.06 0.91 4.89 -3.82 -0.02 0.89 16 12 C 0.01 0.20 2.35 -93.41 -0.22 -0.02 16 13 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 14 C 0.25 5.18 13.67 -20.74 -0.28 4.90 16 15 N -0.48 -10.50 18.54 42.18 0.78 -9.72 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -14.18 8.60 -34.44 -0.30 -14.47 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.68 7.36 -51.93 -0.38 0.30 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 32 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 34 H 0.34 4.01 8.47 -39.29 -0.33 3.68 16 35 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -32.38 330.47 -6.16 -38.54 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.04 Total: 0.33 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.86 Total: -1.34 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.68 Total: -50.20 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.38 -6.16 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.690 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds