Wall clock time and date at job start Mon Mar 30 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.88419 * 2 1 4 4 C 1.54483 * 110.96917 * 236.18609 * 2 1 3 5 5 N 1.46759 * 105.47238 * 216.46583 * 4 2 1 6 6 C 1.34417 * 111.30560 * 17.01811 * 5 4 2 7 7 O 1.21278 * 124.94646 * 179.62994 * 6 5 4 8 8 C 1.51282 * 110.11220 * 359.58859 * 6 5 4 9 9 H 1.09005 * 110.48459 * 102.55871 * 8 6 5 10 10 N 1.46896 * 110.48884 * 225.06852 * 8 6 5 11 11 C 1.46897 * 111.00294 * 273.54663 * 10 8 6 12 12 C 1.52996 * 109.47615 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.46862 * 55.00392 * 12 11 10 14 14 C 1.47194 * 109.47302 * 295.00862 * 12 11 10 15 15 N 5.85503 * 130.35681 * 74.35000 * 2 1 3 16 16 C 1.53002 * 109.47535 * 174.99971 * 12 11 10 17 17 C 1.50696 * 109.46997 * 185.00050 * 16 12 11 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 12 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 12 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08996 * 109.47147 * 296.19035 * 1 2 3 26 26 H 1.09002 * 109.47327 * 56.18963 * 1 2 3 27 27 H 1.09000 * 109.46914 * 176.19189 * 1 2 3 28 28 H 1.09006 * 109.46904 * 183.81375 * 3 2 1 29 29 H 1.09006 * 109.47264 * 303.80711 * 3 2 1 30 30 H 1.08992 * 109.47731 * 63.81193 * 3 2 1 31 31 H 1.09003 * 110.24025 * 97.46517 * 4 2 1 32 32 H 1.09003 * 110.32042 * 335.50677 * 4 2 1 33 33 H 0.96996 * 124.34939 * 197.03989 * 5 4 2 34 34 H 1.00898 * 111.00021 * 37.50771 * 10 8 6 35 35 H 1.09010 * 109.46747 * 59.99777 * 11 10 8 36 36 H 1.08995 * 109.47428 * 300.00636 * 11 10 8 37 37 H 1.09005 * 109.46767 * 65.00401 * 16 12 11 38 38 H 1.09002 * 109.47113 * 305.00741 * 16 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0829 -0.8028 -1.1985 5 7 3.2851 -1.4781 -0.6962 6 6 3.3087 -1.4980 0.6476 7 8 4.1850 -1.9992 1.3197 8 6 2.0834 -0.8034 1.1997 9 1 1.3515 -1.5353 1.5415 10 7 2.4552 0.1006 2.2962 11 6 2.4972 -0.6158 3.5780 12 6 2.8876 0.3562 4.6931 13 1 2.2032 1.2046 4.6917 14 6 4.2617 0.8340 4.4688 15 7 5.3214 1.2036 4.2963 16 6 2.8103 -0.3591 6.0435 17 6 3.0749 0.6283 7.1507 18 1 3.2775 1.6626 6.9150 19 6 3.0584 0.2112 8.4649 20 7 3.2888 1.0729 9.4312 21 14 2.7087 -1.5780 8.8725 22 1 1.2471 -1.7679 9.0536 23 1 3.1863 -2.4411 7.7624 24 1 3.4148 -1.9472 10.1256 25 1 -0.3633 0.4535 0.9221 26 1 -0.3634 0.5718 -0.8539 27 1 -0.3633 -1.0254 -0.0683 28 1 3.1630 1.4033 -0.0684 29 1 1.6707 1.9728 -0.8539 30 1 1.7813 1.9306 0.9221 31 1 2.3419 -0.1297 -2.0159 32 1 1.3497 -1.5368 -1.5329 33 1 3.9744 -1.8607 -1.2614 34 1 3.3358 0.5554 2.1071 35 1 3.2329 -1.4182 3.5217 36 1 1.5150 -1.0379 3.7907 37 1 3.5573 -1.1522 6.0777 38 1 1.8170 -0.7897 6.1702 39 1 3.2768 0.7795 10.3557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:42 Heat of formation + Delta-G solvation = -19.246382 kcal Electronic energy + Delta-G solvation = -20278.443966 eV Core-core repulsion = 17220.509930 eV Total energy + Delta-G solvation = -3057.934036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01992 -37.32853 -37.16073 -34.98374 -33.71245 -32.91636 -31.47376 -27.98257 -27.63480 -26.11526 -25.70225 -22.73146 -21.50746 -20.52826 -19.64115 -17.45772 -17.00335 -16.70082 -16.44881 -15.74270 -15.14831 -14.67694 -14.47273 -14.02113 -13.78535 -13.61895 -13.38774 -12.97974 -12.76050 -12.63219 -12.34793 -12.22617 -12.11127 -11.96458 -11.50571 -11.38687 -11.26732 -11.09953 -10.98616 -10.80696 -10.40980 -10.30035 -9.89710 -9.71468 -9.35681 -9.28282 -8.57721 -8.38877 -6.06982 -4.07202 2.39060 3.11624 3.29298 3.38309 3.40991 3.61819 3.63987 3.92899 4.10192 4.22446 4.42465 4.60003 4.62491 4.77289 5.03297 5.11532 5.13198 5.28000 5.33942 5.44240 5.50293 5.66456 5.69253 5.77422 5.80044 6.00553 6.03871 6.19851 6.22456 6.41126 6.53649 6.76382 6.86499 6.97962 7.16740 7.22355 7.67889 8.05058 8.40800 8.47397 8.96620 9.53226 11.06152 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.004502 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.373326 B = 6217.945817 C = 6221.763106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.135 4.135 4 C 0.105 3.895 5 N -0.733 5.733 6 C 0.484 3.516 7 O -0.524 6.524 8 C 0.063 3.937 9 H 0.118 0.882 10 N -0.658 5.658 11 C 0.055 3.945 12 C 0.020 3.980 13 H 0.116 0.884 14 C 0.237 3.763 15 N -0.466 5.466 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.264 1.264 24 H -0.288 1.288 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.406 0.594 34 H 0.344 0.656 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -4.410 -23.486 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.020 4.020 5 N -0.389 5.389 6 C 0.268 3.732 7 O -0.398 6.398 8 C -0.052 4.052 9 H 0.136 0.864 10 N -0.288 5.288 11 C -0.074 4.074 12 C -0.002 4.002 13 H 0.134 0.866 14 C -0.080 4.080 15 N -0.143 5.143 16 C -0.043 4.043 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.536 5.536 21 Si 0.703 3.297 22 H -0.200 1.200 23 H -0.188 1.188 24 H -0.214 1.214 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.244 0.756 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.825 -3.810 -22.991 24.583 hybrid contribution 0.653 -1.736 0.051 1.855 sum -7.172 -5.546 -22.940 24.666 Atomic orbital electron populations 1.21750 0.92107 1.02026 1.03161 1.21554 0.96965 0.96057 0.92010 1.21708 1.00285 0.93923 1.03309 1.22322 0.86723 0.95822 0.97117 1.46253 1.24791 1.60028 1.07841 1.22157 0.88784 0.79262 0.82979 1.90806 1.40502 1.45889 1.62635 1.22488 0.95235 0.94788 0.92652 0.86394 1.60856 1.38114 1.28817 1.01018 1.22285 1.02469 0.95626 0.87069 1.19026 0.85064 0.99470 0.96672 0.86644 1.29107 0.94967 0.92478 0.91453 1.81017 1.12491 1.10126 1.10668 1.19629 0.97921 0.96634 0.90152 1.21033 1.49199 0.96527 0.89677 0.90777 1.24983 0.94402 0.97381 0.96320 1.69909 1.49328 1.34544 0.99826 0.86827 0.78739 0.85854 0.78235 1.19989 1.18820 1.21354 0.90786 0.92103 0.92475 0.93246 0.92484 0.89769 0.90238 0.90879 0.75556 0.83660 0.93009 0.88924 0.95747 0.94692 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.51 37.16 0.32 -0.45 16 2 C -0.06 -0.48 0.97 -152.88 -0.15 -0.62 16 3 C -0.13 -1.08 7.60 37.16 0.28 -0.80 16 4 C 0.11 0.64 6.90 -3.12 -0.02 0.62 16 5 N -0.73 -6.50 6.24 -59.20 -0.37 -6.87 16 6 C 0.48 6.18 7.80 -10.86 -0.08 6.09 16 7 O -0.52 -9.26 16.95 5.56 0.09 -9.17 16 8 C 0.06 0.65 2.65 -67.73 -0.18 0.47 16 9 H 0.12 1.12 7.63 -51.93 -0.40 0.73 16 10 N -0.66 -8.29 4.97 -106.74 -0.53 -8.82 16 11 C 0.06 0.81 4.92 -3.83 -0.02 0.79 16 12 C 0.02 0.36 2.42 -93.41 -0.23 0.13 16 13 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 14 C 0.24 5.01 12.97 -20.78 -0.27 4.74 16 15 N -0.47 -10.79 18.53 42.14 0.78 -10.01 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 17 C -0.53 -14.43 9.15 -34.44 -0.32 -14.75 16 18 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 21 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.29 8.05 -51.93 -0.42 -0.13 16 28 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.78 7.43 -51.93 -0.39 0.40 16 31 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 32 H 0.07 0.34 7.83 -51.93 -0.41 -0.07 16 33 H 0.41 3.10 8.96 -40.82 -0.37 2.73 16 34 H 0.34 4.92 7.01 -39.29 -0.28 4.64 16 35 H 0.05 0.87 7.12 -51.92 -0.37 0.50 16 36 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 38 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -34.23 323.32 -5.81 -40.04 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.90 Total: 2.24 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.86 Total: -2.03 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.66 Total: -52.37 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.23 -5.81 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.791 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds