Wall clock time and date at job start Mon Mar 30 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.85887 * 2 1 4 4 C 1.54484 * 110.97099 * 123.78350 * 2 1 3 5 5 N 1.46764 * 105.47181 * 92.70495 * 4 2 1 6 6 C 1.34424 * 111.30306 * 17.01713 * 5 4 2 7 7 O 1.21279 * 124.94294 * 179.32549 * 6 5 4 8 8 C 1.51281 * 110.11017 * 359.59326 * 6 5 4 9 9 H 1.09001 * 110.48867 * 225.06693 * 8 6 5 10 10 N 1.46905 * 110.48739 * 102.42939 * 8 6 5 11 11 C 1.46896 * 110.99983 * 86.44915 * 10 8 6 12 12 C 1.53003 * 109.46851 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47533 * 305.00499 * 12 11 10 14 14 C 1.47203 * 109.47137 * 64.99894 * 12 11 10 15 15 N 5.85509 * 156.76819 * 243.43244 * 2 1 3 16 16 C 1.52995 * 109.47420 * 184.99843 * 12 11 10 17 17 C 1.50693 * 109.47653 * 175.00149 * 16 12 11 18 18 H 1.08006 * 119.99541 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00669 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99403 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00416 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47464 * 89.99933 * 21 19 17 23 23 H 1.48505 * 109.47332 * 209.99691 * 21 19 17 24 24 H 1.48498 * 109.47187 * 329.99786 * 21 19 17 25 25 H 1.09003 * 109.46696 * 297.66420 * 1 2 3 26 26 H 1.08996 * 109.46910 * 57.66507 * 1 2 3 27 27 H 1.09001 * 109.46587 * 177.67091 * 1 2 3 28 28 H 1.09001 * 109.47408 * 182.33604 * 3 2 1 29 29 H 1.09003 * 109.47042 * 302.33825 * 3 2 1 30 30 H 1.08995 * 109.47153 * 62.32941 * 3 2 1 31 31 H 1.09002 * 110.24767 * 333.71103 * 4 2 1 32 32 H 1.08999 * 110.24828 * 211.70473 * 4 2 1 33 33 H 0.97006 * 124.35221 * 197.04122 * 5 4 2 34 34 H 1.00898 * 110.99246 * 322.49316 * 10 8 6 35 35 H 1.09002 * 109.47332 * 299.99912 * 11 10 8 36 36 H 1.08997 * 109.47202 * 60.00218 * 11 10 8 37 37 H 1.09002 * 109.47573 * 295.00328 * 16 12 11 38 38 H 1.08999 * 109.46896 * 54.99883 * 16 12 11 39 39 H 0.97005 * 119.99895 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4297 0.0000 4 6 2.0829 -0.8021 1.1989 5 7 2.2854 -2.1664 0.6973 6 6 2.2956 -2.1961 -0.6466 7 8 2.4567 -3.1931 -1.3181 8 6 2.0835 -0.8040 -1.1993 9 1 1.3584 -0.8229 -2.0129 10 7 3.3572 -0.2330 -1.6572 11 6 3.6421 -0.6262 -3.0436 12 6 4.9737 -0.0144 -3.4837 13 1 4.9443 1.0651 -3.3353 14 6 6.0666 -0.5900 -2.6832 15 7 6.9103 -1.0330 -2.0657 16 6 5.2106 -0.3194 -4.9641 17 6 6.4590 0.3851 -5.4288 18 1 7.0269 0.9898 -4.7372 19 6 6.8762 0.2580 -6.7368 20 7 6.1848 -0.4787 -7.5788 21 14 8.4241 1.1308 -7.3125 22 1 9.5969 0.2420 -7.1130 23 1 8.2965 1.4659 -8.7536 24 1 8.6094 2.3784 -6.5288 25 1 -0.3633 0.4772 0.9102 26 1 -0.3633 0.5497 -0.8683 27 1 -0.3632 -1.0269 -0.0418 28 1 3.1637 1.4037 -0.0419 29 1 1.6905 1.9650 -0.8683 30 1 1.7582 1.9391 0.9101 31 1 1.3618 -0.8040 2.0163 32 1 3.0303 -0.3782 1.5318 33 1 2.3971 -2.9466 1.2628 34 1 4.1132 -0.4974 -1.0436 35 1 3.7029 -1.7126 -3.1080 36 1 2.8445 -0.2677 -3.6942 37 1 5.3285 -1.3946 -5.0993 38 1 4.3583 0.0287 -5.5477 39 1 6.4781 -0.5678 -8.4991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931663208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:45 Heat of formation + Delta-G solvation = -23.070403 kcal Electronic energy + Delta-G solvation = -20215.134384 eV Core-core repulsion = 17157.034526 eV Total energy + Delta-G solvation = -3058.099858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98847 -37.33949 -37.04061 -34.87139 -33.65856 -33.06340 -31.33233 -27.75064 -27.49503 -26.04831 -25.43072 -22.72395 -21.84265 -20.66052 -19.62373 -17.41484 -16.68790 -16.58949 -16.22664 -15.76791 -14.89926 -14.76671 -14.51068 -14.10541 -13.90396 -13.57710 -13.19014 -12.99028 -12.67203 -12.55835 -12.24204 -12.09227 -12.06536 -11.78314 -11.53221 -11.30693 -11.12089 -10.99944 -10.92744 -10.73375 -10.50308 -10.36376 -10.16087 -9.53989 -9.29885 -9.21059 -8.43653 -8.38564 -6.07100 -4.10443 2.42524 3.17504 3.31364 3.37990 3.40906 3.57591 3.61838 3.96344 4.07423 4.32435 4.43540 4.56924 4.73224 4.81886 5.09320 5.17477 5.28865 5.30918 5.36947 5.48265 5.52541 5.68739 5.78741 5.80625 5.88188 6.01309 6.12739 6.32594 6.36254 6.54530 6.59491 6.80717 6.89803 7.18383 7.46217 7.56504 7.87579 8.09800 8.24986 8.40208 8.94020 9.54826 11.03803 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.004235 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.669704 B = 6610.692290 C = 6713.240427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C -0.119 4.119 4 C 0.105 3.895 5 N -0.732 5.732 6 C 0.486 3.514 7 O -0.525 6.525 8 C 0.063 3.937 9 H 0.116 0.884 10 N -0.656 5.656 11 C 0.059 3.941 12 C 0.009 3.991 13 H 0.112 0.888 14 C 0.239 3.761 15 N -0.475 5.475 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.407 0.593 34 H 0.340 0.660 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.025 0.975 38 H 0.041 0.959 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.034 3.406 16.933 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.177 4.177 4 C -0.020 4.020 5 N -0.389 5.389 6 C 0.269 3.731 7 O -0.399 6.399 8 C -0.051 4.051 9 H 0.134 0.866 10 N -0.287 5.287 11 C -0.071 4.071 12 C -0.013 4.013 13 H 0.130 0.870 14 C -0.077 4.077 15 N -0.152 5.152 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.245 0.755 34 H 0.158 0.842 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.965 2.854 17.046 21.605 hybrid contribution 0.947 -0.785 -0.213 1.249 sum -12.018 2.068 16.832 20.786 Atomic orbital electron populations 1.21810 0.92946 1.02015 1.02732 1.21581 0.95964 0.96794 0.92833 1.21542 1.02428 0.92382 1.01357 1.22321 1.01211 0.81420 0.97001 1.46272 1.74314 1.10475 1.07810 1.22079 0.75806 0.92256 0.82951 1.90786 1.48782 1.37564 1.62798 1.22488 0.95165 0.88923 0.98489 0.86626 1.60903 1.03181 1.60079 1.04496 1.22273 0.97551 0.99242 0.87988 1.19322 0.85152 1.00286 0.96562 0.87018 1.29322 0.94117 0.92480 0.91813 1.81008 1.10817 1.10551 1.12858 1.19163 0.98240 0.98149 0.85093 1.21133 1.09353 1.30411 0.95561 0.92512 1.24952 0.96983 0.95224 0.96798 1.69945 1.39026 1.39060 1.04905 0.86592 0.83488 0.80076 0.77908 1.20721 1.21089 1.19724 0.91822 0.91460 0.92740 0.90864 0.91475 0.93276 0.90276 0.90805 0.75522 0.84189 0.93422 0.88538 0.95669 0.94099 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.49 37.16 0.32 -0.58 16 2 C -0.07 -0.55 0.98 -152.88 -0.15 -0.70 16 3 C -0.12 -0.91 8.04 37.16 0.30 -0.61 16 4 C 0.10 0.76 6.90 -3.12 -0.02 0.74 16 5 N -0.73 -7.15 6.24 -59.20 -0.37 -7.52 16 6 C 0.49 6.53 7.70 -10.86 -0.08 6.45 16 7 O -0.53 -9.58 17.67 5.56 0.10 -9.48 16 8 C 0.06 0.70 2.65 -67.72 -0.18 0.52 16 9 H 0.12 1.28 7.65 -51.93 -0.40 0.88 16 10 N -0.66 -8.30 4.53 -106.74 -0.48 -8.79 16 11 C 0.06 0.90 4.96 -3.82 -0.02 0.89 16 12 C 0.01 0.16 2.42 -93.41 -0.23 -0.06 16 13 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 14 C 0.24 4.95 12.97 -20.78 -0.27 4.68 16 15 N -0.48 -10.62 18.53 42.13 0.78 -9.84 16 16 C 0.03 0.76 4.42 -27.89 -0.12 0.63 16 17 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 18 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.65 7.15 -51.93 -0.37 0.28 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.41 7.91 -51.93 -0.41 -0.01 16 32 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 33 H 0.41 3.44 8.96 -40.82 -0.37 3.08 16 34 H 0.34 4.66 7.57 -39.29 -0.30 4.36 16 35 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 36 H 0.10 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -32.60 328.68 -6.14 -38.74 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.99 Total: 1.40 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.85 Total: -0.82 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.66 Total: -51.24 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.10 Total: -9.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.60 -6.14 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931663208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.672 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds