Wall clock time and date at job start Mon Mar 30 2020 00:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34498 * 126.83420 * 2 1 4 4 N 1.36450 * 108.84989 * 180.24934 * 3 2 1 5 5 H 0.97004 * 124.84137 * 179.72577 * 4 3 2 6 6 C 1.34651 * 110.30565 * 359.74564 * 4 3 2 7 7 C 1.36777 * 108.39356 * 0.02562 * 6 4 3 8 8 C 1.47271 * 126.93917 * 179.97438 * 7 6 4 9 9 O 1.21626 * 119.99592 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00074 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99871 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47294 * 54.99887 * 13 12 11 15 15 C 1.53006 * 109.47104 * 175.00526 * 13 12 11 16 16 N 1.46505 * 109.47024 * 294.99928 * 13 12 11 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 13 12 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 13 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 H 1.08995 * 109.47633 * 270.15649 * 1 2 3 26 26 H 1.09007 * 109.47157 * 30.15625 * 1 2 3 27 27 H 1.08996 * 109.47139 * 150.14649 * 1 2 3 28 28 H 1.07995 * 125.56841 * 0.03499 * 3 2 1 29 29 H 1.08001 * 125.80414 * 180.02562 * 6 4 3 30 30 H 0.97004 * 120.00257 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.46967 * 60.00147 * 11 10 8 32 32 H 1.09002 * 109.47323 * 299.99763 * 11 10 8 33 33 H 1.09003 * 109.47011 * 59.99676 * 12 11 10 34 34 H 1.09002 * 109.46836 * 300.00173 * 12 11 10 35 35 H 1.09004 * 109.46242 * 299.99533 * 15 13 12 36 36 H 1.08994 * 109.47567 * 59.99528 * 15 13 12 37 37 H 1.08991 * 109.47054 * 180.02562 * 15 13 12 38 38 H 0.97000 * 119.99792 * 334.99921 * 16 13 12 39 39 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6552 -0.0056 5 1 4.3840 1.2413 -0.0106 6 6 3.6657 -0.6902 -0.0037 7 6 2.3863 -1.1740 0.0027 8 6 1.9749 -2.5881 0.0062 9 8 0.7936 -2.8776 0.0115 10 7 2.9073 -3.5612 0.0037 11 6 2.4979 -4.9678 0.0066 12 6 3.7404 -5.8606 0.0021 13 6 3.3129 -7.3296 0.0046 14 1 2.6421 -7.5142 -0.8344 15 6 4.5497 -8.2210 -0.1255 16 7 2.6210 -7.6348 1.2593 17 6 1.7216 -8.6660 1.3120 18 1 1.5226 -9.2546 0.4286 19 6 1.0703 -8.9587 2.5024 20 7 0.2098 -9.9533 2.5543 21 14 1.4149 -7.9410 4.0304 22 1 0.4721 -6.7950 4.0849 23 1 1.2372 -8.7862 5.2385 24 1 2.8095 -7.4328 3.9826 25 1 -0.3634 0.0028 1.0276 26 1 -0.3634 0.8886 -0.5163 27 1 -0.3633 -0.8913 -0.5115 28 1 1.9868 2.1059 0.0005 29 1 4.5664 -1.2860 -0.0067 30 1 3.8494 -3.3303 -0.0002 31 1 1.8997 -5.1740 -0.8809 32 1 1.9065 -5.1723 0.8991 33 1 4.3391 -5.6545 0.8894 34 1 4.3316 -5.6561 -0.8906 35 1 5.0645 -7.9939 -1.0591 36 1 5.2206 -8.0364 0.7135 37 1 4.2451 -9.2674 -0.1242 38 1 2.8000 -7.1063 2.0528 39 1 -0.2457 -10.1577 3.3860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663008112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:59 Heat of formation + Delta-G solvation = 9.340088 kcal Electronic energy + Delta-G solvation = -19595.004296 eV Core-core repulsion = 16538.309863 eV Total energy + Delta-G solvation = -3056.694433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32611 -38.91774 -36.64501 -34.34594 -32.53377 -32.22956 -30.54308 -29.41760 -28.00046 -26.65783 -24.02453 -23.04697 -21.92768 -20.24374 -19.85979 -19.17122 -18.49568 -17.51139 -16.17184 -15.51538 -15.36572 -14.91938 -14.28274 -14.13491 -13.95017 -13.62155 -13.33957 -13.15376 -12.81354 -12.72236 -12.46783 -12.42012 -12.15153 -11.87527 -11.48261 -11.15101 -10.97193 -10.72728 -10.59672 -10.34997 -9.99860 -9.58386 -9.51482 -8.92446 -8.86540 -8.62076 -8.46179 -7.20894 -5.70169 -3.05398 1.66785 2.25880 2.97464 3.43153 3.46963 3.47887 3.52073 3.69090 4.62421 4.66095 4.84977 4.95121 5.19623 5.23653 5.29895 5.46178 5.54896 5.66084 5.67258 5.70485 5.83511 6.00946 6.02035 6.13217 6.19220 6.30953 6.32911 6.44005 6.55895 6.66677 6.72166 6.74863 6.82914 7.01823 7.20400 7.78659 8.06062 8.48892 8.55802 9.27385 10.00061 10.19325 11.48409 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.004237 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.280762 B = 6606.414193 C = 7242.378894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.108 4.108 3 C -0.030 4.030 4 N -0.551 5.551 5 H 0.416 0.584 6 C 0.042 3.958 7 C -0.222 4.222 8 C 0.581 3.419 9 O -0.538 6.538 10 N -0.731 5.731 11 C 0.123 3.877 12 C -0.135 4.135 13 C 0.179 3.821 14 H 0.059 0.941 15 C -0.164 4.164 16 N -0.748 5.748 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.392 0.608 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.360 0.640 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.321 23.310 -6.752 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.094 4.094 7 C -0.233 4.233 8 C 0.369 3.631 9 O -0.415 6.415 10 N -0.382 5.382 11 C 0.000 4.000 12 C -0.174 4.174 13 C 0.069 3.931 14 H 0.077 0.923 15 C -0.224 4.224 16 N -0.391 5.391 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.205 1.205 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.225 0.775 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.193 0.807 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.369 22.979 -6.806 26.112 hybrid contribution 1.195 0.969 1.265 1.992 sum 11.564 23.948 -5.541 27.165 Atomic orbital electron populations 1.20208 0.89278 1.02616 1.02100 1.20605 0.95745 0.90373 1.04739 1.21565 0.82436 0.99172 1.12584 1.41457 1.08251 1.06648 1.58204 0.74780 1.21902 0.98523 0.83854 1.05131 1.20507 0.92649 0.93108 1.16993 1.17419 0.85597 0.83938 0.76151 1.90781 1.17170 1.83660 1.49882 1.45956 1.09032 1.06891 1.76328 1.21411 0.97308 0.77814 1.03491 1.22104 0.96846 0.96733 1.01733 1.20127 0.92683 0.89762 0.90483 0.92348 1.22395 0.98886 1.01843 0.99243 1.42828 1.49993 1.38897 1.07428 1.19068 1.14074 1.06458 0.97500 0.89169 1.24644 0.98911 0.98091 0.97368 1.69695 1.31004 1.31033 1.26543 0.86597 0.77830 0.80174 0.84220 1.20940 1.21847 1.20464 0.91756 0.92479 0.90132 0.81492 0.81199 0.77510 0.91428 0.90394 0.91841 0.91501 0.94261 0.93693 0.92269 0.80703 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.97 36.00 0.36 -0.65 16 2 C -0.11 -1.30 6.35 -102.54 -0.65 -1.96 16 3 C -0.03 -0.26 11.82 -16.82 -0.20 -0.45 16 4 N -0.55 -3.65 5.90 -12.84 -0.08 -3.73 16 5 H 0.42 1.19 8.96 -40.82 -0.37 0.82 16 6 C 0.04 0.36 11.40 -16.84 -0.19 0.17 16 7 C -0.22 -2.85 6.29 -103.35 -0.65 -3.50 16 8 C 0.58 9.33 7.81 -12.59 -0.10 9.23 16 9 O -0.54 -10.98 15.32 5.25 0.08 -10.90 16 10 N -0.73 -9.97 5.55 -61.43 -0.34 -10.31 16 11 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 12 C -0.14 -1.96 4.87 -26.73 -0.13 -2.09 16 13 C 0.18 3.34 2.89 -67.93 -0.20 3.14 16 14 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 15 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 16 N -0.75 -17.60 4.38 -53.42 -0.23 -17.84 16 17 C -0.24 -6.86 10.41 -15.06 -0.16 -7.01 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 21 Si 0.88 22.80 27.74 -169.99 -4.72 18.09 16 22 H -0.28 -7.42 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.28 -6.74 6.51 56.52 0.37 -6.37 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.08 1.17 6.86 -51.93 -0.36 0.81 16 28 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.17 0.86 7.45 -52.49 -0.39 0.47 16 30 H 0.39 3.84 7.42 -40.82 -0.30 3.53 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 39 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -36.68 327.69 -7.12 -43.80 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.87 Total: 8.63 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.68 Total: -3.49 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.12 Total: -61.06 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.72 Total: 18.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.68 -7.12 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.140 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds