Wall clock time and date at job start Mon Mar 30 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46851 * 305.00268 * 3 2 1 5 5 C 1.50699 * 109.47394 * 185.00066 * 3 2 1 6 6 H 1.08004 * 119.99907 * 240.00183 * 5 3 2 7 7 C 1.37880 * 120.00011 * 59.99581 * 5 3 2 8 8 N 1.31511 * 119.99801 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99809 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47084 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 120.00341 * 9 7 5 12 12 H 1.48500 * 109.46794 * 240.00304 * 9 7 5 13 13 N 1.46501 * 109.46649 * 64.99684 * 3 2 1 14 14 C 1.34772 * 120.00448 * 275.00039 * 13 3 2 15 15 O 1.21581 * 119.99744 * 0.02562 * 14 13 3 16 16 C 1.47706 * 120.00316 * 180.02562 * 14 13 3 17 17 C 1.41501 * 126.52153 * 180.29128 * 16 14 13 18 18 C 1.35359 * 105.50659 * 180.10309 * 17 16 14 19 19 C 1.50703 * 126.38738 * 179.90119 * 18 17 16 20 20 N 1.35031 * 107.22949 * 359.63619 * 18 17 16 21 21 C 1.46495 * 124.88763 * 180.22316 * 20 18 17 22 22 C 1.53003 * 109.47298 * 89.99938 * 21 20 18 23 23 N 1.28474 * 110.23153 * 0.24034 * 20 18 17 24 24 H 1.08999 * 109.47281 * 300.00023 * 1 2 3 25 25 H 1.09005 * 109.47449 * 60.00195 * 1 2 3 26 26 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47281 * 239.99977 * 2 1 3 28 28 H 1.08998 * 109.47514 * 120.00148 * 2 1 3 29 29 H 0.97006 * 119.99547 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99574 * 95.00761 * 13 3 2 31 31 H 1.08003 * 127.24581 * 359.97438 * 17 16 14 32 32 H 1.09002 * 109.47152 * 269.68487 * 19 18 17 33 33 H 1.09001 * 109.46980 * 149.68588 * 19 18 17 34 34 H 1.09004 * 109.47113 * 29.68569 * 19 18 17 35 35 H 1.09003 * 109.47345 * 209.99984 * 21 20 18 36 36 H 1.08992 * 109.47180 * 329.99680 * 21 20 18 37 37 H 1.08998 * 109.46999 * 60.00163 * 22 21 20 38 38 H 1.09000 * 109.47209 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46960 * 300.00281 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3811 10 1 6.5988 1.5443 -0.1931 11 1 6.4962 -0.5189 -1.4626 12 1 6.3999 1.6158 -2.6091 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6318 0.4321 16 6 0.0444 3.3252 2.6289 17 6 -1.1927 3.9555 2.9016 18 6 -1.0930 4.4145 4.1710 19 6 -2.1519 5.1662 4.9357 20 7 0.1301 4.0682 4.6266 21 6 0.6425 4.3716 5.9651 22 6 0.2859 3.2294 6.9187 23 7 0.7800 3.4348 3.7173 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2718 2.1232 1.9978 31 1 -2.0379 4.0520 2.2361 32 1 -2.0263 6.2367 4.7734 33 1 -2.0572 4.9464 5.9991 34 1 -3.1383 4.8592 4.5877 35 1 1.7258 4.4846 5.9225 36 1 0.1945 5.2980 6.3243 37 1 0.7340 2.3030 6.5595 38 1 0.6676 3.4549 7.9145 39 1 -0.7974 3.1164 6.9613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190127310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:34 Heat of formation + Delta-G solvation = 26.869362 kcal Electronic energy + Delta-G solvation = -20238.889372 eV Core-core repulsion = 17182.955065 eV Total energy + Delta-G solvation = -3055.934307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.49368 -38.61103 -35.02258 -34.56620 -32.74603 -32.16601 -30.89432 -29.76186 -27.20917 -26.73687 -24.57954 -23.04660 -22.16425 -20.63065 -19.64745 -18.90979 -17.16274 -16.71751 -15.91113 -15.52747 -15.15904 -14.82949 -14.27030 -14.17548 -13.57836 -13.32907 -13.23121 -13.07236 -12.76321 -12.60896 -12.39524 -12.11089 -11.80668 -11.61585 -11.40600 -11.18189 -10.90108 -10.77430 -10.56070 -10.24508 -10.08075 -9.55130 -9.10610 -8.94527 -8.85675 -8.75340 -8.42483 -7.69138 -6.05130 -4.13505 1.93599 2.38798 2.53040 3.28777 3.36339 3.39940 4.15533 4.18946 4.32653 4.45791 4.62128 4.66178 4.88280 4.89270 5.11396 5.24600 5.26384 5.30565 5.45031 5.60110 5.75567 5.80435 5.92261 6.09208 6.48503 6.56478 6.65814 6.76407 6.92848 7.15192 7.29397 7.46441 7.55463 7.71503 7.82933 7.98274 8.16750 8.26095 8.81158 8.87861 9.24773 9.53671 11.00429 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.004735 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.702682 B = 5912.120716 C = 6525.487353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.586 3.414 15 O -0.543 6.543 16 C -0.001 4.001 17 C -0.183 4.183 18 C 0.000 4.000 19 C -0.080 4.080 20 N -0.286 5.286 21 C 0.116 3.884 22 C -0.170 4.170 23 N -0.264 5.264 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.158 0.842 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 7.860 17.659 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.369 3.631 15 O -0.420 6.420 16 C -0.162 4.162 17 C -0.211 4.211 18 C -0.124 4.124 19 C -0.138 4.138 20 N -0.075 5.075 21 C -0.005 4.005 22 C -0.228 4.228 23 N -0.098 5.098 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.176 0.824 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.130 7.469 17.335 20.177 hybrid contribution 0.566 0.161 -0.005 0.588 sum -6.565 7.630 17.330 20.041 Atomic orbital electron populations 1.21847 0.98337 0.98022 1.01324 1.21932 0.92660 0.99739 1.02270 1.18843 0.94288 0.89244 0.80915 0.93138 1.21286 0.90726 1.38673 1.06218 0.92011 1.24877 0.98538 0.94874 0.95392 1.69912 1.34939 1.37865 1.09332 0.86406 0.85010 0.77702 0.78065 1.19765 1.20920 1.20918 1.46390 1.14184 1.54786 1.18629 1.16904 0.83006 0.78749 0.84453 1.90752 1.51927 1.60623 1.38696 1.22412 0.93990 1.05330 0.94438 1.21523 0.99564 1.04506 0.95471 1.21309 0.89369 1.05723 0.96014 1.20298 0.95781 0.99128 0.98640 1.45488 1.10434 1.39905 1.11713 1.21887 1.01796 0.99336 0.77437 1.22176 1.02682 0.98934 0.99057 1.73577 1.23955 1.14198 0.98112 0.94230 0.93077 0.95873 0.88233 0.95032 0.92693 0.77306 0.82411 0.90686 0.91511 0.89781 0.88054 0.88535 0.91183 0.90257 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.51 37.15 0.32 -2.93 16 2 C -0.13 -3.24 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 7.12 2.24 -69.08 -0.15 6.96 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.59 8.73 -34.44 -0.30 -14.89 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.24 11.29 55.43 0.63 -24.62 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -16.06 5.02 -55.92 -0.28 -16.34 16 14 C 0.59 13.24 6.39 -12.39 -0.08 13.16 16 15 O -0.54 -13.62 14.06 5.29 0.07 -13.55 16 16 C 0.00 -0.01 7.13 -82.77 -0.59 -0.60 16 17 C -0.18 -2.93 10.73 -39.37 -0.42 -3.35 16 18 C 0.00 0.00 6.92 -82.21 -0.57 -0.57 16 19 C -0.08 -0.61 9.86 36.01 0.35 -0.25 16 20 N -0.29 -3.76 3.30 -57.11 -0.19 -3.95 16 21 C 0.12 0.95 6.61 -4.04 -0.03 0.93 16 22 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 23 N -0.26 -4.49 11.67 33.42 0.39 -4.10 16 24 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 25 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 8.50 8.26 -40.82 -0.34 8.16 16 31 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.38 7.65 -51.93 -0.40 -0.02 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.52 7.55 -51.93 -0.39 0.13 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -32.71 324.02 -6.72 -39.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.88 Total: 6.15 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.33 Total: -4.04 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.55 Total: -49.01 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.71 -6.72 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190127310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.302 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds