Wall clock time and date at job start Mon Mar 30 2020 01:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.47183 * 300.00111 * 15 13 12 17 17 C 1.53002 * 109.47295 * 59.99816 * 15 13 12 18 18 C 1.52999 * 109.47204 * 179.97438 * 15 13 12 19 19 C 1.50708 * 109.47116 * 174.99882 * 18 15 13 20 20 C 1.39867 * 126.03719 * 269.69395 * 19 18 15 21 21 N 1.30840 * 108.19880 * 179.81979 * 20 19 18 22 22 N 1.40086 * 108.20542 * 0.43448 * 21 20 19 23 23 C 1.46498 * 126.03810 * 179.69958 * 22 21 20 24 24 C 1.34950 * 107.92382 * 359.72336 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 30 30 H 1.09001 * 109.47602 * 180.02562 * 17 15 13 31 31 H 1.09001 * 109.47011 * 299.99877 * 17 15 13 32 32 H 1.08999 * 109.47215 * 59.99859 * 17 15 13 33 33 H 1.08998 * 109.47459 * 295.00087 * 18 15 13 34 34 H 1.08998 * 109.46700 * 55.00288 * 18 15 13 35 35 H 1.07997 * 125.90623 * 0.02562 * 20 19 18 36 36 H 1.09008 * 109.46976 * 270.02635 * 23 22 21 37 37 H 1.09000 * 109.47453 * 30.02500 * 23 22 21 38 38 H 1.08999 * 109.47400 * 150.02992 * 23 22 21 39 39 H 1.08001 * 126.12363 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 1.9759 -1.5505 3.8326 17 6 4.0513 -1.2797 3.3224 18 6 2.7009 0.2546 4.7588 19 6 3.0845 -0.4818 6.0165 20 6 2.2016 -1.0784 6.9225 21 7 2.9059 -1.6214 7.8821 22 7 4.2608 -1.3786 7.6218 23 6 5.3886 -1.8090 8.4520 24 6 4.3436 -0.6776 6.4716 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.2490 -1.6317 1.1527 30 1 4.4141 -1.7940 4.2123 31 1 4.0145 -1.9801 2.4880 32 1 4.7242 -0.4579 3.0775 33 1 3.4400 1.0283 4.5510 34 1 1.7214 0.7140 4.8912 35 1 1.1247 -1.0916 6.8421 36 1 5.6125 -1.0376 9.1889 37 1 5.1302 -2.7361 8.9636 38 1 6.2622 -1.9733 7.8212 39 1 5.2522 -0.3349 5.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627654086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:22 Heat of formation + Delta-G solvation = 24.011842 kcal Electronic energy + Delta-G solvation = -19768.161981 eV Core-core repulsion = 16712.103763 eV Total energy + Delta-G solvation = -3056.058218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29758 -39.01921 -35.21898 -34.46697 -33.09765 -32.28124 -30.29321 -28.64055 -27.70514 -25.63712 -25.22482 -23.23316 -21.14296 -20.78336 -19.89451 -19.07183 -17.14180 -16.73886 -15.67210 -15.54708 -15.19984 -14.85767 -14.47129 -14.30741 -13.56381 -13.26069 -13.17000 -13.07050 -12.75200 -12.42049 -12.30873 -12.14488 -11.77929 -11.50971 -11.09783 -10.99184 -10.98132 -10.82965 -10.67505 -10.44691 -10.26234 -10.20957 -9.49313 -8.99907 -8.86697 -8.52116 -8.34112 -7.82262 -6.09672 -4.18647 1.79902 2.41752 2.75325 3.24811 3.32547 3.35232 3.51920 4.18419 4.36237 4.45054 4.75409 4.86887 5.01252 5.11728 5.16212 5.22291 5.25906 5.32062 5.55223 5.59869 5.79517 5.85142 6.00627 6.08111 6.24686 6.42291 6.46508 6.63131 6.87520 6.91808 7.02150 7.20572 7.53567 7.61666 7.62283 7.74195 7.96627 8.19455 8.75177 8.83195 9.22639 9.49529 10.96298 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.003556 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.169207 B = 7871.512883 C = 8250.313154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.504 3.496 14 O -0.557 6.557 15 C -0.107 4.107 16 H 0.089 0.911 17 C -0.140 4.140 18 C -0.021 4.021 19 C -0.223 4.223 20 C 0.053 3.947 21 N -0.303 5.303 22 N -0.382 5.382 23 C 0.103 3.897 24 C 0.054 3.946 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.014 0.986 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.182 0.818 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -5.897 17.537 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.289 3.711 14 O -0.437 6.437 15 C -0.128 4.128 16 H 0.107 0.893 17 C -0.198 4.198 18 C -0.060 4.060 19 C -0.234 4.234 20 C -0.133 4.133 21 N -0.124 5.124 22 N -0.165 5.165 23 C -0.038 4.038 24 C -0.092 4.092 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.199 0.801 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.773 -5.647 18.584 20.920 hybrid contribution 0.473 -0.516 -1.679 1.819 sum 8.247 -6.163 16.905 19.793 Atomic orbital electron populations 1.22076 0.98590 0.99036 1.00859 1.18714 0.90959 0.93974 0.80195 0.93456 1.21274 1.32236 1.13121 0.90401 0.92094 1.24894 0.94861 0.94971 0.99049 1.69913 1.35982 1.22533 1.23698 0.86412 0.78595 0.79529 0.82659 1.19760 1.20907 1.20905 1.46527 1.65061 1.13489 1.10622 1.20456 0.78370 0.87458 0.84813 1.90640 1.51560 1.16219 1.85255 1.21295 0.98470 0.99137 0.93931 0.89270 1.21768 0.95334 1.01074 1.01598 1.19671 1.02928 0.95436 0.87952 1.20187 0.91791 1.10120 1.01350 1.23853 1.00332 0.96949 0.92201 1.77323 0.86518 1.24455 1.24127 1.48427 1.05649 1.43331 1.19069 1.21804 0.85517 1.01531 0.94964 1.22356 0.99865 0.97989 0.88979 0.95551 0.89237 0.96641 0.92675 0.78032 0.92224 0.92216 0.92302 0.90878 0.90320 0.80070 0.90990 0.89497 0.89597 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.76 2.56 -69.09 -0.18 6.59 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.71 -14.82 4.96 -54.94 -0.27 -15.10 16 13 C 0.50 9.95 7.12 -10.99 -0.08 9.87 16 14 O -0.56 -13.23 15.58 5.56 0.09 -13.14 16 15 C -0.11 -1.53 2.72 -91.77 -0.25 -1.77 16 16 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.14 -1.72 8.80 37.16 0.33 -1.40 16 18 C -0.02 -0.28 4.52 -27.88 -0.13 -0.41 16 19 C -0.22 -2.66 4.82 -105.05 -0.51 -3.17 16 20 C 0.05 0.64 11.96 -17.36 -0.21 0.43 16 21 N -0.30 -3.88 12.58 30.62 0.39 -3.50 16 22 N -0.38 -4.01 4.01 -68.16 -0.27 -4.28 16 23 C 0.10 0.62 11.47 59.85 0.69 1.31 16 24 C 0.05 0.55 10.02 -17.22 -0.17 0.38 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 7.08 7.96 -40.82 -0.32 6.75 16 30 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 31 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 35 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -32.97 327.43 -6.03 -39.00 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.94 Total: 5.20 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.55 Total: -4.35 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.47 Total: -47.32 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.97 -6.03 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627654086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.010 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds