Wall clock time and date at job start Mon Mar 30 2020 01:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.47183 * 300.00111 * 15 13 12 17 17 C 1.53002 * 109.47295 * 59.99816 * 15 13 12 18 18 C 1.52999 * 109.47204 * 179.97438 * 15 13 12 19 19 C 1.50708 * 109.47116 * 174.99882 * 18 15 13 20 20 C 1.39867 * 126.03719 * 269.69395 * 19 18 15 21 21 N 1.30840 * 108.19880 * 179.81979 * 20 19 18 22 22 N 1.40086 * 108.20542 * 0.43448 * 21 20 19 23 23 C 1.46498 * 126.03810 * 179.69958 * 22 21 20 24 24 C 1.34950 * 107.92382 * 359.72336 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 30 30 H 1.09001 * 109.47602 * 180.02562 * 17 15 13 31 31 H 1.09001 * 109.47011 * 299.99877 * 17 15 13 32 32 H 1.08999 * 109.47215 * 59.99859 * 17 15 13 33 33 H 1.08998 * 109.47459 * 295.00087 * 18 15 13 34 34 H 1.08998 * 109.46700 * 55.00288 * 18 15 13 35 35 H 1.07997 * 125.90623 * 0.02562 * 20 19 18 36 36 H 1.09008 * 109.46976 * 270.02635 * 23 22 21 37 37 H 1.09000 * 109.47453 * 30.02500 * 23 22 21 38 38 H 1.08999 * 109.47400 * 150.02992 * 23 22 21 39 39 H 1.08001 * 126.12363 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 1.9759 -1.5505 3.8326 17 6 4.0513 -1.2797 3.3224 18 6 2.7009 0.2546 4.7588 19 6 3.0845 -0.4818 6.0165 20 6 2.2016 -1.0784 6.9225 21 7 2.9059 -1.6214 7.8821 22 7 4.2608 -1.3786 7.6218 23 6 5.3886 -1.8090 8.4520 24 6 4.3436 -0.6776 6.4716 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.2490 -1.6317 1.1527 30 1 4.4141 -1.7940 4.2123 31 1 4.0145 -1.9801 2.4880 32 1 4.7242 -0.4579 3.0775 33 1 3.4400 1.0283 4.5510 34 1 1.7214 0.7140 4.8912 35 1 1.1247 -1.0916 6.8421 36 1 5.6125 -1.0376 9.1889 37 1 5.1302 -2.7361 8.9636 38 1 6.2622 -1.9733 7.8212 39 1 5.2522 -0.3349 5.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627654086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:22 Heat of formation + Delta-G solvation = 1.894923 kcal Electronic energy + Delta-G solvation = -19769.121043 eV Core-core repulsion = 16712.103763 eV Total energy + Delta-G solvation = -3057.017280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14041 -40.63174 -36.85643 -35.91606 -34.31386 -33.79408 -31.48747 -30.28204 -28.54031 -27.32663 -26.50867 -24.63144 -22.44784 -21.89486 -21.09293 -20.58436 -18.79259 -17.74807 -17.22757 -17.08490 -16.35942 -16.22706 -15.89416 -15.27342 -15.00499 -14.66185 -14.41453 -14.08263 -13.92952 -13.61415 -13.51491 -13.17496 -13.13864 -12.97891 -12.84309 -12.74835 -12.62738 -12.26353 -12.11447 -12.04419 -11.94068 -11.40461 -11.06418 -10.63532 -10.45758 -10.29116 -9.67174 -9.22883 -8.15647 -6.33077 0.99497 1.45340 1.46154 1.58348 1.75451 1.84897 1.92994 2.38763 2.74982 3.14683 3.70522 3.93999 4.03412 4.15738 4.19552 4.39718 4.48597 4.58170 4.63363 4.72067 4.74282 4.79471 4.93001 4.94646 4.99465 5.05307 5.13254 5.27803 5.34796 5.44708 5.47761 5.65585 5.73042 5.75162 5.94918 6.13406 6.20290 6.75954 6.78250 7.05080 7.35171 7.64570 8.90832 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.003556 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.169207 B = 7871.512883 C = 8250.313154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.706 5.706 13 C 0.500 3.500 14 O -0.602 6.602 15 C -0.092 4.092 16 H 0.106 0.894 17 C -0.134 4.134 18 C -0.010 4.010 19 C -0.241 4.241 20 C 0.043 3.957 21 N -0.333 5.333 22 N -0.381 5.381 23 C 0.093 3.907 24 C 0.065 3.935 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.011 0.989 28 H 0.265 0.735 29 H 0.403 0.597 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.191 0.809 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 -7.978 18.151 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.484 6.484 15 C -0.113 4.113 16 H 0.124 0.876 17 C -0.191 4.191 18 C -0.050 4.050 19 C -0.253 4.253 20 C -0.142 4.142 21 N -0.156 5.156 22 N -0.163 5.163 23 C -0.047 4.047 24 C -0.081 4.081 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.238 0.762 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.208 0.792 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.706 -7.775 19.242 22.911 hybrid contribution -0.089 0.181 -1.788 1.799 sum 9.617 -7.593 17.454 21.326 Atomic orbital electron populations 1.21907 0.98540 0.99375 0.99507 1.18311 0.90974 0.91913 0.82214 0.98485 1.21594 1.32391 1.13462 0.90840 0.90852 1.25818 0.94918 0.95604 1.02378 1.70063 1.37109 1.24049 1.24489 0.85291 0.78068 0.78543 0.78387 1.18264 1.20544 1.20955 1.46305 1.65184 1.14139 1.09827 1.21459 0.77000 0.87041 0.85753 1.90619 1.53253 1.18526 1.86025 1.21265 0.99980 0.99089 0.91015 0.87567 1.21749 0.93499 1.01031 1.02863 1.19473 1.01789 0.95137 0.88556 1.20005 0.92722 1.11459 1.01079 1.24086 1.01081 0.96879 0.92177 1.77279 0.87935 1.25548 1.24803 1.48796 1.05726 1.42527 1.19280 1.22181 0.84986 1.02024 0.95501 1.22766 1.00260 0.96565 0.88544 0.94160 0.91589 0.96942 0.92604 0.76191 0.89764 0.91939 0.92693 0.91630 0.92168 0.79192 0.89769 0.89213 0.86745 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.28 16 2 C 0.27 14.14 2.56 44.24 0.11 14.25 16 3 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 4 C -0.54 -28.96 8.73 25.60 0.22 -28.73 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.71 -29.41 4.96 -446.11 -2.21 -31.62 16 13 C 0.50 19.81 7.12 87.66 0.62 20.43 16 14 O -0.60 -29.54 15.58 -3.03 -0.05 -29.59 16 15 C -0.09 -2.51 2.72 -11.54 -0.03 -2.54 16 16 H 0.11 2.59 8.14 -2.39 -0.02 2.58 16 17 C -0.13 -2.94 8.80 71.98 0.63 -2.31 16 18 C -0.01 -0.27 4.52 29.85 0.13 -0.14 16 19 C -0.24 -5.36 4.82 -20.14 -0.10 -5.46 16 20 C 0.04 0.99 11.96 85.23 1.02 2.01 16 21 N -0.33 -8.05 12.58 -57.03 -0.72 -8.77 16 22 N -0.38 -7.00 4.01 -369.56 -1.48 -8.48 16 23 C 0.09 0.83 11.47 127.77 1.47 2.29 16 24 C 0.07 1.16 10.02 83.54 0.84 2.00 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 27 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.40 14.18 7.96 -92.70 -0.74 13.44 16 30 H 0.08 1.47 6.42 -2.39 -0.02 1.46 16 31 H 0.06 1.35 7.56 -2.39 -0.02 1.33 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 35 H 0.19 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -72.80 327.43 4.15 -68.65 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.30 Total: 21.97 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.04 Total: -3.34 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -4.17 Total: -101.74 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -72.80 4.15 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627654086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds