Wall clock time and date at job start Mon Mar 30 2020 00:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46993 * 2 1 4 4 C 1.50697 * 109.47267 * 240.00153 * 2 1 3 5 5 O 1.21281 * 120.00425 * 240.00075 * 4 2 1 6 6 N 1.34782 * 120.00027 * 59.99578 * 4 2 1 7 7 C 1.46502 * 120.00225 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47169 * 180.02562 * 7 6 4 9 9 N 1.46502 * 109.47169 * 180.02562 * 8 7 6 10 10 C 1.46505 * 119.99854 * 89.99724 * 9 8 7 11 11 C 1.36937 * 120.00234 * 270.00390 * 9 8 7 12 12 H 1.07998 * 119.99836 * 23.03668 * 11 9 8 13 13 C 1.38809 * 119.99924 * 203.04607 * 11 9 8 14 14 N 1.31617 * 120.00173 * 12.93105 * 13 11 9 15 15 Si 1.86803 * 119.99975 * 192.93282 * 13 11 9 16 16 H 1.48503 * 109.46721 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47057 * 119.99673 * 15 13 11 18 18 H 1.48499 * 109.47412 * 239.99885 * 15 13 11 19 19 N 1.46504 * 109.47558 * 119.99911 * 2 1 3 20 20 C 1.36338 * 125.63062 * 59.69467 * 19 2 1 21 21 C 1.34855 * 108.21976 * 179.83413 * 20 19 2 22 22 C 1.40894 * 107.40961 * 0.42100 * 21 20 19 23 23 C 1.34854 * 107.42062 * 359.73952 * 22 21 20 24 24 H 1.09000 * 109.47176 * 60.00305 * 1 2 3 25 25 H 1.08998 * 109.46993 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46910 * 299.99585 * 1 2 3 27 27 H 0.96993 * 119.99885 * 0.02562 * 6 4 2 28 28 H 1.09003 * 109.47154 * 300.00319 * 7 6 4 29 29 H 1.08998 * 109.47018 * 60.00100 * 7 6 4 30 30 H 1.09004 * 109.47051 * 299.99575 * 8 7 6 31 31 H 1.08998 * 109.47220 * 60.00039 * 8 7 6 32 32 H 1.09001 * 109.46916 * 95.12609 * 10 9 8 33 33 H 1.09000 * 109.46737 * 215.12412 * 10 9 8 34 34 H 1.08994 * 109.47167 * 335.12656 * 10 9 8 35 35 H 0.97006 * 120.00189 * 179.97438 * 14 13 11 36 36 H 1.07999 * 125.89718 * 359.95945 * 20 19 2 37 37 H 1.07999 * 126.29736 * 180.16233 * 21 20 19 38 38 H 1.08004 * 126.28756 * 179.73474 * 22 21 20 39 39 H 1.08003 * 125.89025 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9408 -3.6508 8 6 1.6852 -0.2191 -4.9000 9 7 2.1725 -0.9104 -6.0962 10 6 1.3795 -1.9874 -6.6940 11 6 3.3694 -0.5498 -6.6555 12 1 4.1173 -0.0521 -6.0562 13 6 3.6211 -0.8240 -7.9927 14 7 2.6372 -1.1922 -8.7856 15 14 5.3564 -0.6704 -8.6670 16 1 6.2738 -0.2434 -7.5801 17 1 5.7981 -1.9839 -9.2007 18 1 5.3768 0.3387 -9.7563 19 7 2.0184 -0.6906 1.1962 20 6 1.7561 -1.9867 1.5278 21 6 2.3801 -2.2587 2.6919 22 6 3.0442 -1.0846 3.0986 23 6 2.8056 -0.1416 2.1646 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.1493 0.5389 -2.5436 28 1 3.2846 -0.9412 -3.6510 29 1 1.8309 -1.9683 -3.6507 30 1 0.5951 -0.2184 -4.9000 31 1 2.0492 0.8083 -4.8999 32 1 0.7649 -1.5828 -7.4981 33 1 2.0468 -2.7501 -7.0954 34 1 0.7369 -2.4307 -5.9334 35 1 2.8131 -1.3834 -9.7202 36 1 1.1542 -2.6773 0.9558 37 1 2.3690 -3.2018 3.2181 38 1 3.6357 -0.9623 3.9939 39 1 3.1741 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:33 Heat of formation + Delta-G solvation = 42.471518 kcal Electronic energy + Delta-G solvation = -19745.573560 eV Core-core repulsion = 16690.315813 eV Total energy + Delta-G solvation = -3055.257747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39144 -39.35470 -36.16803 -34.52391 -34.13539 -31.39530 -29.59355 -28.73452 -28.06582 -25.92625 -24.86971 -23.16388 -20.95897 -20.74333 -20.43880 -19.53729 -17.77702 -17.01795 -16.69287 -15.67784 -15.40691 -14.75621 -14.44453 -14.23619 -13.74297 -13.66985 -13.45050 -13.30024 -12.71527 -12.62564 -12.43159 -12.33905 -12.27853 -12.07004 -11.80949 -11.24785 -10.97408 -10.90829 -10.65321 -10.41312 -10.02397 -9.99238 -9.86007 -8.87933 -8.64095 -8.58010 -8.07933 -6.85948 -5.79597 -3.28170 2.22724 2.53937 2.73631 3.12723 3.29606 3.35088 3.42680 3.44983 4.35460 4.46236 4.50061 4.60835 4.91891 5.18831 5.21363 5.29100 5.33959 5.54534 5.57071 5.66347 5.66754 5.71372 5.80390 6.15739 6.31575 6.34169 6.44542 6.55050 6.68450 6.77260 7.03381 7.25693 7.30645 7.31814 7.55472 7.65503 7.75153 8.20052 8.32162 9.15492 9.77681 10.25336 11.25204 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.003530 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.049710 B = 7930.654811 C = 8283.132625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 H 0.121 0.879 4 C 0.495 3.505 5 O -0.521 6.521 6 N -0.717 5.717 7 C 0.094 3.906 8 C 0.144 3.856 9 N -0.597 5.597 10 C 0.161 3.839 11 C -0.262 4.262 12 H 0.069 0.931 13 C 0.005 3.995 14 N -0.905 5.905 15 Si 0.906 3.094 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.289 1.289 19 N -0.432 5.432 20 C 0.019 3.981 21 C -0.212 4.212 22 C -0.199 4.199 23 C -0.021 4.021 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.397 0.603 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.253 0.747 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 4.312 18.754 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.007 3.993 3 H 0.139 0.861 4 C 0.278 3.722 5 O -0.396 6.396 6 N -0.369 5.369 7 C -0.031 4.031 8 C 0.016 3.984 9 N -0.320 5.320 10 C 0.016 3.984 11 C -0.391 4.391 12 H 0.087 0.913 13 C -0.194 4.194 14 N -0.550 5.550 15 Si 0.736 3.264 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.216 1.216 19 N -0.108 5.108 20 C -0.111 4.111 21 C -0.236 4.236 22 C -0.224 4.224 23 C -0.150 4.150 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.231 0.769 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.777 3.701 18.281 19.526 hybrid contribution 0.776 0.380 -0.583 1.042 sum -5.001 4.081 17.698 18.838 Atomic orbital electron populations 1.22124 0.91280 1.04194 1.03976 1.21311 0.96765 0.97515 0.83738 0.86077 1.20559 0.81402 0.85506 0.84775 1.90786 1.36855 1.25703 1.86276 1.46050 1.53162 1.31932 1.05800 1.22505 1.00155 0.96974 0.83495 1.20829 0.96349 0.95149 0.86121 1.43793 1.22515 1.38053 1.27591 1.20847 0.93831 0.89947 0.93774 1.19231 0.91318 1.36213 0.92367 0.91286 1.25033 0.97651 1.00953 0.95752 1.70078 1.29520 1.50652 1.04739 0.86169 0.84109 0.77412 0.78759 1.20235 1.21468 1.21629 1.43714 1.39732 1.10624 1.16727 1.21648 1.05517 0.85661 0.98287 1.20825 1.05119 0.99222 0.98426 1.20827 1.06495 0.93885 1.01165 1.21752 1.01773 0.99852 0.91595 0.89920 0.91075 0.90565 0.76900 0.91458 0.92102 0.94044 0.92900 0.94791 0.93896 0.98271 0.93680 0.82840 0.84992 0.84968 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.13 37.16 0.34 -0.81 16 2 C 0.11 1.14 3.36 -69.08 -0.23 0.91 16 3 H 0.12 0.90 8.06 -51.93 -0.42 0.49 16 4 C 0.49 6.96 7.11 -10.98 -0.08 6.88 16 5 O -0.52 -9.93 15.47 5.56 0.09 -9.84 16 6 N -0.72 -9.37 5.45 -60.30 -0.33 -9.70 16 7 C 0.09 1.65 6.00 -4.04 -0.02 1.63 16 8 C 0.14 2.73 5.76 -4.04 -0.02 2.70 16 9 N -0.60 -14.66 2.92 -181.12 -0.53 -15.19 16 10 C 0.16 3.89 8.98 59.85 0.54 4.43 16 11 C -0.26 -7.12 9.65 -15.06 -0.15 -7.26 16 12 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 13 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 14 N -0.91 -26.12 10.71 55.49 0.59 -25.52 16 15 Si 0.91 21.77 29.57 -169.99 -5.03 16.75 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 N -0.43 -5.28 2.40 -111.26 -0.27 -5.54 16 20 C 0.02 0.25 9.57 -16.75 -0.16 0.09 16 21 C -0.21 -2.72 10.86 -39.78 -0.43 -3.15 16 22 C -0.20 -2.41 10.86 -39.78 -0.43 -2.84 16 23 C -0.02 -0.24 11.39 -16.75 -0.19 -0.44 16 24 H 0.08 0.45 7.56 -51.93 -0.39 0.06 16 25 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 3.75 7.89 -40.82 -0.32 3.43 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 31 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 32 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 33 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 34 H 0.00 -0.03 8.03 -51.93 -0.42 -0.44 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -33.61 328.69 -7.52 -41.13 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.07 Total: 0.80 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.93 Total: 2.18 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.53 Total: -55.96 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.61 -7.52 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.599 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds